EWM27499.1, cds3168 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27499.1 vs. NCBI_GenBank
Match: gi|585109763|gb|EWM27499.1| (hypothetical protein Naga_100099g2 [Nannochloropsis gaditana]) HSP 1 Score: 830.861 bits (2145), Expect = 0.000e+0 Identity = 409/409 (100.00%), Postives = 409/409 (100.00%), Query Frame = 0
Query: 1 MLLLNEADEPEELSISTLGCAAGPIFRTAATGSCRVNVPFLDTLAPITKVGVAGEGLPQGRAREDGKGGGLLPGTVLELYGASGSGKTEVALNAVCGWVLPRKFSGVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTLVKEGGEGGREAVFSARAVLLGALQPHQPGPTWKGMGGGAGVLASHCWFKVEQDGICQVGWPKEDCDK 409
MLLLNEADEPEELSISTLGCAAGPIFRTAATGSCRVNVPFLDTLAPITKVGVAGEGLPQGRAREDGKGGGLLPGTVLELYGASGSGKTEVALNAVCGWVLPRKFSGVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTLVKEGGEGGREAVFSARAVLLGALQPHQPGPTWKGMGGGAGVLASHCWFKVEQDGICQVGWPKEDCDK
Sbjct: 1 MLLLNEADEPEELSISTLGCAAGPIFRTAATGSCRVNVPFLDTLAPITKVGVAGEGLPQGRAREDGKGGGLLPGTVLELYGASGSGKTEVALNAVCGWVLPRKFSGVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTLVKEGGEGGREAVFSARAVLLGALQPHQPGPTWKGMGGGAGVLASHCWFKVEQDGICQVGWPKEDCDK 409
BLAST of EWM27499.1 vs. NCBI_GenBank
Match: gi|731397730|ref|XP_010652985.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Vitis vinifera] >gi|731397732|ref|XP_010652986.1| PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Vitis vinifera] >gi|731397734|ref|XP_010652987.1| PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Vitis vinifera]) HSP 1 Score: 77.0258 bits (188), Expect = 5.679e-12 Identity = 73/313 (23.32%), Postives = 131/313 (41.85%), Query Frame = 0
Query: 74 GTVLELYGASGSGKTEVALNAVCGWVLPRKFSGV--GGV---AVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAG--TPTLVVLDSLGSCFYERKAAESCH---------QGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRY-------PGLEHKEYMPGQWSRLVTHRLTLVKEGGEGGREAVFSARAVLLG 363
G V+E+ G S S KT++ + A +LP+++ GV GG+ + +D+D R D+ L L + K + G G K W +++ +G G N IG + A A M + + +RC D E + L+TL+Y L R T +++DS+G+ ++ +A+ S H QS + ++ I ++ + V+A K + + +E + K N L ++E+MP W VTHR+ LV+ + + + +R++ L
Sbjct: 40 GNVVEIAGPSPSAKTQILIQAAVYCILPKEWRGVHYGGLEHLVMFIDLDCRFDI-----LCLSQSLKHRLMETSG-----SGNKVNWE--QNDDPWGSGTEEPN---------IGYDEELFA-------------ACMRRFLYIRCYDSFEFLATLKTLRYRLQRARETHGVTAHFLMIDSIGAFYWVDRASTSLHLESNSRKRLSLQSISETVVEE-IRKLLLVHPMLVLATKATILGDTYSTNEVKRTSMKLSSNDPSNLRTVTGGPQKLSYREFMPLVWQSFVTHRI-LVRAADDDPANSKYQSRSIFLS 316
BLAST of EWM27499.1 vs. NCBI_GenBank
Match: gi|296082650|emb|CBI21655.3| (unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 76.6406 bits (187), Expect = 7.275e-12 Identity = 73/313 (23.32%), Postives = 131/313 (41.85%), Query Frame = 0
Query: 74 GTVLELYGASGSGKTEVALNAVCGWVLPRKFSGV--GGV---AVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAG--TPTLVVLDSLGSCFYERKAAESCH---------QGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRY-------PGLEHKEYMPGQWSRLVTHRLTLVKEGGEGGREAVFSARAVLLG 363
G V+E+ G S S KT++ + A +LP+++ GV GG+ + +D+D R D+ L L + K + G G K W +++ +G G N IG + A A M + + +RC D E + L+TL+Y L R T +++DS+G+ ++ +A+ S H QS + ++ I ++ + V+A K + + +E + K N L ++E+MP W VTHR+ LV+ + + + +R++ L
Sbjct: 25 GNVVEIAGPSPSAKTQILIQAAVYCILPKEWRGVHYGGLEHLVMFIDLDCRFDI-----LCLSQSLKHRLMETSG-----SGNKVNWE--QNDDPWGSGTEEPN---------IGYDEELFA-------------ACMRRFLYIRCYDSFEFLATLKTLRYRLQRARETHGVTAHFLMIDSIGAFYWVDRASTSLHLESNSRKRLSLQSISETVVEE-IRKLLLVHPMLVLATKATILGDTYSTNEVKRTSMKLSSNDPSNLRTVTGGPQKLSYREFMPLVWQSFVTHRI-LVRAADDDPANSKYQSRSIFLS 301
BLAST of EWM27499.1 vs. NCBI_GenBank
Match: gi|225438285|ref|XP_002272275.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Vitis vinifera] >gi|731397737|ref|XP_010652988.1| PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Vitis vinifera] >gi|731397739|ref|XP_010652989.1| PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Vitis vinifera] >gi|731397741|ref|XP_010652990.1| PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Vitis vinifera]) HSP 1 Score: 73.1738 bits (178), Expect = 1.032e-10 Identity = 72/297 (24.24%), Postives = 124/297 (41.75%), Query Frame = 0
Query: 74 GTVLELYGASGSGKTEVALNAVCGWVLPRKFSGV--GGV---AVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAG--TPTLVVLDSLGSCFYERKAAESCH---------QGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRY-------PGLEHKEYMPGQWSRLVTHRLTLVKEGG 347
G V+E+ G S S KT++ + A +LP+++ GV GG+ + +D+D R D+ L L + K + G G K W +++ +G G N IG + A A M + + +RC D E + L+TL+Y L R T +++DS+G+ ++ +A+ S H QS + ++ I ++ + V+A K + + +E + K N L ++E+MP W VTHR+ LV+ G
Sbjct: 40 GNVVEIAGPSPSAKTQILIQAAVYCILPKEWRGVHYGGLEHLVMFIDLDCRFDI-----LCLSQSLKHRLMETSG-----SGNKVNWE--QNDDPWGSGTEEPN---------IGYDEELFA-------------ACMRRFLYIRCYDSFEFLATLKTLRYRLQRARETHGVTAHFLMIDSIGAFYWVDRASTSLHLESNSRKRLSLQSISETVVEE-IRKLLLVHPMLVLATKATILGDTYSTNEVKRTSMKLSSNDPSNLRTVTGGPQKLSYREFMPLVWQSFVTHRI-LVRAAG 300
BLAST of EWM27499.1 vs. NCBI_GenBank
Match: gi|919048351|ref|XP_013407314.1| (PREDICTED: DNA repair protein XRCC2-like [Lingula anatina]) HSP 1 Score: 72.4034 bits (176), Expect = 1.737e-10 Identity = 74/321 (23.05%), Postives = 131/321 (40.81%), Query Frame = 0
Query: 57 LPQGRAREDGKGGGLLPGTVLELYGASGSGKTEVALNAVCGWVLPRK---FSGVGGVA--VVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLK-YDLDRGEGAGTPTLVVLDSLGSCFY--------ERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRY--PGLEHKEYMPGQWSRLVTHRLTLVKEGGEGGREAVFSARAVL 361
LP G + D V+ELYG G GKTE+ L+ + +LPR FS G A +++D D+ + RL LL R+ + + G NG+ G GI+ N G++ P+ + + ++ + ++ + RC + + L +L L+R E +++LDSL S FY + A +Q Q C + + ++ S + + A KPA+ + + E GN + +H EY+ W ++V+ R + K G +++V + +L
Sbjct: 30 LPSGPQKRD----------VIELYGDEGCGKTEMLLHIILNTILPRNWRGFSFYGQEAGIILIDTDYHFSILRLSTLLENRVDRVVSEATG-----------LQKNGDLIPQNG-GITSNTGYK-------DLPEQENPKLPTQTDKETFIKSCLKRLFVFRCSSPTQLIATLHSLDALLLNRPEIC----ILMLDSL-SAFYWIDHSNGCDSAVARESNQRQVC------KILNKLITSYNLVIFATKPAIIHKRNNLALDKTEEKDCTGNPSIQTGDKSSDHCEYLCKAWQKMVSSRWSFSKGQGNKVKQSVNAQMFIL 310
BLAST of EWM27499.1 vs. NCBI_GenBank
Match: gi|390366047|ref|XP_788095.2| (PREDICTED: DNA repair protein XRCC2-like [Strongylocentrotus purpuratus]) HSP 1 Score: 70.0922 bits (170), Expect = 1.259e-9 Identity = 68/298 (22.82%), Postives = 126/298 (42.28%), Query Frame = 0
Query: 73 PGTVLELYGASGSGKTEVALNAVCGWVLPRKFS-----GVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQ---LGQGGWDERRQGT-----------KRKWSNGESETSYGQGISGNNGFRA--TTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQ-------RTVHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTL 342
PG V+E+YG SGSGKTE+ LN +LP ++ G+G V VD D + + RL LL ++ +A+ +G + GT +K ++ ET Q ++ N + TT + + D A E+ + +A + ++ +V+ + L +L+ L +++++DS+ + ++ K Q + + R+ + + + A K AL Q R G + + + +H E+M +W++LVTHR+ L
Sbjct: 37 PGDVVEIYGNSGSGKTELLLNLAAMCILPEQWKAIDIGGLGTSVVFVDTDHQFSMLRLFALLERKVAEAIDKRTKRKGRIGDHDGGTASTTHFNSECANQKDNDSNKETCLQQNVNLNLHSASCRTTESAKQSTDEAKFSPPSEEEVETFLKACLKKLYMVKIATSNQLVITLHSLESLL---ASQCDISVLMMDSVSAFYWVDKMKGDGAHRQGVNQKLAFGALSRLVEDYHLVLFASKAALVTKQPQNEFSLRLDSTGETDHSNQTSTSSVKL-STDHHEFMSQEWTKLVTHRMIL 330
BLAST of EWM27499.1 vs. NCBI_GenBank
Match: gi|780182229|ref|XP_011662171.1| (PREDICTED: DNA repair protein XRCC2-like [Strongylocentrotus purpuratus]) HSP 1 Score: 68.9366 bits (167), Expect = 3.987e-9 Identity = 72/300 (24.00%), Postives = 130/300 (43.33%), Query Frame = 0
Query: 73 PGTVLELYGASGSGKTEVALNAVCGWVLPRKFS-----GVGGVAVVVDMDFRVDVRRLRCLLLGRIRKAL--------QLG--QGGWDE----RRQGTKRKWSNGESETSYGQGISGNNGFRA--TTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGSCFY--ERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQ-------RTVHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTL 342
PG V+E+YG SGSGKTE+ LN +LP ++ G+G V +D D + + RL LL ++ +A+ ++G GG + +K S+ ET Q ++ N + TT + + D A E+ + +A + ++ +V+ + L +L+ L +++++DS+ S FY +R + H+ Q + + R+ + + + A K AL Q R G + + +H E+M +W++LVTHR+ L
Sbjct: 85 PGDVVEIYGNSGSGKTELLLNLAAMCILPERWKTIDIGGLGTSVVFIDTDHQFSMLRLFALLERKVAEAIDNRTKRKGRIGDHDGGTSSTTHFNSECANQKDSDSNKETCLQQNVNLNLHSASCRTTETADRSIDEAKFSPPSEEEVETFLKACLKKLYMVKIATSNQLVITLHSLESLL---ASQCDISVLMMDSV-SAFYWVDRMKGDGAHR-QGVNQKLAFGALSRLVEDYHLVLFASKAALVTKQPQNEFSLRLDSTGETDHSNRTSTTSVKL-STDHHEFMSQEWTKLVTHRMIL 378
BLAST of EWM27499.1 vs. NCBI_GenBank
Match: gi|971508837|dbj|GAQ89378.1| (DNA recombination and repair protein [Klebsormidium nitens]) HSP 1 Score: 67.781 bits (164), Expect = 7.384e-9 Identity = 74/302 (24.50%), Postives = 118/302 (39.07%), Query Frame = 0
Query: 68 GGGLLPGTVLELYGASGSGKTEVALNAVCGWVLPRKFS-----GVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLD---RGEGAGTPTLVVLDSLGSCFYERK-----AAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPAL--------------FAGQRTVHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTL 342
+ PG V+E++GASGSGKTE+ AV +LP + G GG A+ D+D R D+ RL +L RI +A Q+ QGG D A + + T A++ + L+ C + + L+ L+ ++ + G + L+ +DS+G+ + K A QS + + + + ++A K A+ A R+ EG + ++E + L HKEYMP W VTHRL L
Sbjct: 43 SAAIRPGNVVEIFGASGSGKTEILTQAVATCILPSEVDGVGYGGAGGAALFFDLDGRFDILRLVRILESRINEA-QVAQGGGD------------------------------ADALSQVFT-------------------ASLRRFRLLHCHNSFHLLAALKMLQPEIRQIVQNHGPDSLHLICIDSIGAFHWLDKGLHLWAGHRDALTQSGLSKAVVTELKHIMKRHRPLMLATKSAIGAPNRWRPYGSGSTTASGRSPQEGARGSHEDEDPELPQKAVLYHKEYMPAVWQDFVTHRLVL 294
BLAST of EWM27499.1 vs. NCBI_GenBank
Match: gi|1176088576|ref|XP_020614636.1| (DNA repair protein XRCC2-like [Orbicella faveolata]) HSP 1 Score: 67.0106 bits (162), Expect = 9.858e-9 Identity = 65/293 (22.18%), Postives = 116/293 (39.59%), Query Frame = 0
Query: 70 GLLPGTVLELYGASGSGKTEVALNAVCGWVLPR-----KFSGVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTLVKEGGEGGREAVFSA 357
G+ PG V+E G GSGKTE+ L+ + +LP+ K +G V VD D+ + RL ++ RI +++ +T G + N R+ T+ +I DSA + D + ++ + ++ +V C ++ + + +L+ L G + ++DSL + ++ + Q I I Q V VIA K A+F G ++ R E++ W +LV +R K G+ G ++S
Sbjct: 33 GIQPGNVVEFSGQEGSGKTEMLLHLIANCILPKSWKDLKLNGRSVGVVYVDTDYHFQLLRLVTIMEHRILNSIK----------------------DTQTGAFLENN---RSNTVENIPGSDSAHYPEKYSDYE-DFIKSCLGRLFIVHCNSSIQLLATVLSLENLLAAKPEVG---VFMIDSLSAFYWLDRCGGGSQSHQEHKQQKIVDAIRNYTQQYRVVVIATKQAIF------------GSSDKSMNR---------EHLCQAWQKLVNYRFEFDKNKGQNGMNQIYSV 275
BLAST of EWM27499.1 vs. NCBI_GenBank
Match: gi|1160556949|ref|XP_020436371.1| (AAA ATPase domain-containing protein [Polysphondylium pallidum PN500] >gi|281210087|gb|EFA84255.1| AAA ATPase domain-containing protein [Polysphondylium pallidum PN500]) HSP 1 Score: 62.003 bits (149), Expect = 6.970e-7 Identity = 67/292 (22.95%), Postives = 118/292 (40.41%), Query Frame = 0
Query: 74 GTVLELYGASGSGKTEVALNAVCGWVLPRK--------------FSGVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKY-------DLDRGEGAGTPTLVVLDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRY--PGLEHKEYMPGQWSRLVTHRLTL 342
G V+E+ G+SG+GK+E AL+ V +LP F G V D D++ D+ RLR ++L + L Q E+ + K K S+ + + Q + N+ +++ I C + ++ + +C D ++ S L L + ++ G LVV+DS+ S ++ K ES G + ++ ++VI K ++F EG N ++ P L +++ QWSRLV +R+ L
Sbjct: 84 GGVIEINGSSGTGKSECALHIVVQSILPNNWPIYESNSNSSELVFGGNEIGVVYFDNDYKFDLERLRSIILLKFNHCLTNKQHQIAEKIKLQKDKDSSSTPDELFIQQLDINDSSSSSSACYILFEKLFNEC--------------LSRLYIYKCKDSVQFISTLNALPHLIKSVGKEVRDGSAKREIQLVVIDSVSSFYWLDKQGESL--GSRLGQLVGLDLFHQIISQYQLTVIGIKQSIFK------EGTNTTPNFNNNNNHQITKPPLPKNDFLGPQWSRLVKYRIKL 353 The following BLAST results are available for this feature:
BLAST of EWM27499.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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