rna3173, rna3173 (mRNA) Nannochloropsis gaditana

Overview
Namerna3173
Unique Namerna3173
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1500
Alignment locationCM002460.1:914541..915992 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100948g2.181.mrna
Orig protein idgnl|cribi|Naga_100948g2.181
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:914541..915992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100948g2gene3050Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3173rna3173-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27507.1cds3165Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3173 ID=rna3173|Name=rna3173|organism=Nannochloropsis gaditana|type=mRNA|length=1500bp
ATGGCAGAGTACGATCTCACTCAGAAGATTGCCCCTTTTACCGACGTGCA
CTTTTTAGTCCAGTCGGATGGACCTCTTGATTTTCTCATCGAACAAGCTG
AGTACTATTCCTACGACGACGTCATGCGAGCGAAGCTGGCCCTCCTTGCC
AAGACTAAGAATGTGGACGGGCAACTACGTGCACTGGAGGAACTCCAGGA
AGACATCCCCCCCGAACTGGAGGCACAGCAGCAAGCAAACGATGAGCGGG
AAGAAGTGCTTCGGGAAGCCGCGGGGGATGCTTTGGATATGTTCAGCCTT
GAGGACATGACCACGATCAAAGAGTACGTCACCGCGGGCGCAACGGATCC
CGCCGAGAAATTGGAGATGAAAGAAAAGTTGCTTGCCGCCTTGCCCGCCT
ACTACGACTACGCAAAATTCAAGTACGAACGAGGGGAGTACGATGACGCG
TATTTGTTTTTGAACAATTACATTCAGGCCATTGGGGACAGAGCGGCTTT
TTCCACGGTTCGGTATTCGCACGCGCTCTGGGGTCGATTGGGGGCCGTGA
TCCTCACGCAGCAATGGCACCTGGTCAAAGATGCAGTGGAGGCGATCGAC
AAGCACATCATGACCGTGAAACGACGCGAGGACGGCGTGCCTCCCACGAT
GCCTTCGCCCTCCGACCCAGATCCGATTCGCTCCATGTCGGACCGGGAGA
AACTTCAGCTGCGGACGTGGGTGCTGCATTGGTGCCTCTTCGCCTACCCG
GTCACGCCCGACGAGGCCCGAAAGCGGGAGTCGGCGGGGGACAAGTGGGA
GAACATTTTAGAACTGATCTTCCCTGTCAACGACGAGAAGCAGGGGCCGG
GCAATGGCCCCGATCGATACCGGCAGGCGGTCCAGAACAATGCCCCCTGG
CTCCTGCGTTACGTCACGACGATGGTGATCCTGCACAAACGGCCCATGAG
CGAGCGGTTCCGGCGGAAGCAGGACGTGATCAAGGAGGTGATCTGGCTGA
TTGAACAGGAGGCCTACACTTACCAGGACCCGATCACGCAATTTCTCCAG
TGCCTGTACGTCCGCTTTGATTTCGACGGGGCGCAAGAGAAACTTCAAGC
CTGCTACCACGTGCTTCGCAACGACTACTTCCTCTCGGGGTGGGCGGACG
CGTTCTTGGTGGAAGCGCGTCAGTTGATATTCGAGACTTACTGCCGCATT
CACCAGAAGATCGATATCAACATGTTGGGGCAAAAGCTGGGCATGTCCCC
TGCGGAGGCGGAAAAATGGATCGTGGATCTGATCTTGGATTCCAAGTTGG
TGGCGAAAATTGACTCCCGCGACAATTACGTGGAGATGAACACTCGGTCG
CCCTCTGTGTATCATCAGGTACTGGACCGCACGGAGCGCCTGGCCTCCTC
CACCTTCCGATTGGGCACGGATACGCAGAAGATTTTCGGGCAGACCCTAG
GGGGCTACCCTGATAGGGGGGCAACAGGGGGGAGACGGGGGAGGCCTTGA
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protein sequence of rna3173

>rna3173-protein ID=rna3173-protein|Name=rna3173|organism=Nannochloropsis gaditana|type=polypeptide|length=265bp
MGGRISSLVFQPPSKRSHINSTKYIILPTSKGNRIPAFYFDRSAHITVLV
SHGNAEDLGMIYDQFFDFSRQLNVNVMAYEYSGYGRATGSPSESNCYADI
DAAFKYLVEIKKVVPSRLVLLGRSIGSGPSCYLAERLALSGTPVGGVMLQ
SPVLSILRVVLPDLRWTWWGDMFPNVDRVKRMECPIFVIHGTRDEIVPFR
HGQDLFLATPVQWRARPLWVEGGGHNDLEGRLRQEGTYFSCVLEFLREWC
SGEGGGHRGLHGSVY
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mRNA from alignment at CM002460.1:914541..915992-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3173 ID=rna3173|Name=rna3173|organism=Nannochloropsis gaditana|type=mRNA|length=1452bp|location=Sequence derived from alignment at CM002460.1:914541..915992- (Nannochloropsis gaditana)
CTCGTTTCTGCCATCTTAGTTCAAAGGAGCACAATACTTCATCTGGTGCC
TGAAAGTGGATAGCTTATCCATGAAAGGGAAGGAATGTTGCTGGCTTTGC
TTACGTCCTTGGGTGTCCTCGACAACCCTCATTAGACCACCCTTTTTCAT
CTCACTTATCGATGATCCCGCACAGGTTAAGCTTTTCCCTTGGATTGTCC
TTTACTTGCAAGCACACTGACCGTGATCCTGCCTCAGCGCGATACTTTGA
GCGGTGGCCATGGGCGGTCGCATCTCCTCCCTCGTCTTCCAACCTCCCTC
CAAACGTTCGCACATAAACTCCACCAAATACATCATCCTACCCACCAGCA
AAGGAAACAGAATTCCGGCTTTTTACTTTGACCGGTCGGCACATATAACT
GTGCTGGTATCGCACGGAAACGCCGAAGATTTGGGTGAGTTGTCGCAGAG
TGGCGAAAATCAGCAGGAGGAGGTATAGCTTGCCGACGTAAACCAACCAG
TGGAGCGCCCTCGTGGCTTTCTCGCGCTTCGCTCGGTCGTTTGGTATACT
CACACACATTCCCATCACAGGTATGATCTATGACCAATTTTTTGACTTCT
CTCGGCAACTCAACGTGAACGTTATGGCCTACGAATATTCCGGGTACGGG
AGGGCGACTGGGTCGCCTTCGGAAAGCAATTGCTACGCCGATATCGACGC
TGCTTTCAAGTATTTGGTGGAAATCAAGAAAGTCGTGCCCTCACGATTGG
TGCTGTTGGGGCGATCGATTGGCAGCGGTCCCAGCTGTTACCTTGCCGAA
CGTCTCGCTTTGTCTGGCACGCCCGTGGGTGGAGTGATGCTACAGAGTCC
CGTCCTCTCTATACTCCGAGTGGTCCTCCCAGACCTGCGTTGGACCTGGT
GGGGCGACATGTTTCCCAACGTGGATCGGGTCAAGAGGATGGAATGCCCC
ATCTTCGTCATCCATGGCACGCGGGACGAGATCGTTCCTTTCCGTCACGG
GCAAGACTTATTCCTGGCCACTCCCGTGCAATGGAGAGCAAGACCATTGT
GGGTGGAGGGAGGCGGGCACAATGACCTGGAGGGGCGGTTGCGGCAGGAG
GGGACATATTTTTCCTGCGTTTTGGAATTTTTGCGCGAATGGTGTTCGGG
GGAGGGAGGGGGGCATAGGGGTCTTCACGGCAGTGTCTATTAGGGGGTGC
GTTGATGCCTGGCGATGGGGCCGGAAGGAGACACGAAGATGGAAAACAGG
GAGGTGGGGTCCACCAAGAGGGGTAGAACGTGGGCGACGGTGTAATGTAT
TGTAGACGATAGCGGGCCATCGCAATGACAGCCAAAGTACATATTCACGG
GCGAGGACACGGGGGGGACGATAAAACCAACCGAAGACTAACGCGTTCTC
CTATCGAACCCGTTCCCGAAGGCGGGAAGCCAAAGCACGCGCGCCGTCTT
CA
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Coding sequence (CDS) from alignment at CM002460.1:914541..915992-

>rna3173 ID=rna3173|Name=rna3173|organism=Nannochloropsis gaditana|type=CDS|length=1596bp|location=Sequence derived from alignment at CM002460.1:914541..915992- (Nannochloropsis gaditana)
GTATGATCTATGACCAATTTTTTGACTTCTCTCGGCAACTCAACGTGAAC
GTTATGGCCTACGAATATTCCGGGTACGGGAGGGCGACTGGGTCGCCTTC
GGAAAGCAATTGCTACGCCGATATCGACGCTGCTTTCAAGTATTTGGTGG
AAATCAAGAAAGTCGTGCCCTCACGATTGGTGCTGTTGGGGCGATCGATT
GGCAGCGGTCCCAGCTGTTACCTTGCCGAACGTCTCGCTTTGTCTGGCAC
GCCCGTGGGTGGAGTGATGCTACAGAGTCCCGTCCTCTCTATACTCCGAG
TGGTCCTCCCAGACCTGCGTTGGACCTGGTGGGGCGACATGTTTCCCAAC
GTGGATCGGGTCAAGAGGATGGAATGCCCCATCTTCGTCATCCATGGCAC
GCGGGACGAGATCGTTCCTTTCCGTCACGGGCAAGACTTATTCCTGGCCA
CTCCCGTGCAATGGAGAGCAAGACCATTGTGGGTGGAGGGAGGCGGGCAC
AATGACCTGGAGGGGCGGTTGCGGCAGGAGGGGACATATTTTTCCTGCGT
TTTGGAATTTTTGCGCGAATGGTGTTCGGGGGAGGGAGGGGGGCATAGGG
GTCTTCACGGCAGTGTCTATTAGATGGGCGGTCGCATCTCCTCCCTCGTC
TTCCAACCTCCCTCCAAACGTTCGCACATAAACTCCACCAAATACATCAT
CCTACCCACCAGCAAAGGAAACAGAATTCCGGCTTTTTACTTTGACCGGT
CGGCACATATAACTGTGCTGGTATCGCACGGAAACGCCGAAGATTTGGGT
ATGATCTATGACCAATTTTTTGACTTCTCTCGGCAACTCAACGTGAACGT
TATGGCCTACGAATATTCCGGGTACGGGAGGGCGACTGGGTCGCCTTCGG
AAAGCAATTGCTACGCCGATATCGACGCTGCTTTCAAGTATTTGGTGGAA
ATCAAGAAAGTCGTGCCCTCACGATTGGTGCTGTTGGGGCGATCGATTGG
CAGCGGTCCCAGCTGTTACCTTGCCGAACGTCTCGCTTTGTCTGGCACGC
CCGTGGGTGGAGTGATGCTACAGAGTCCCGTCCTCTCTATACTCCGAGTG
GTCCTCCCAGACCTGCGTTGGACCTGGTGGGGCGACATGTTTCCCAACGT
GGATCGGGTCAAGAGGATGGAATGCCCCATCTTCGTCATCCATGGCACGC
GGGACGAGATCGTTCCTTTCCGTCACGGGCAAGACTTATTCCTGGCCACT
CCCGTGCAATGGAGAGCAAGACCATTGTGGGTGGAGGGAGGCGGGCACAA
TGACCTGGAGGGGCGGTTGCGGCAGGAGGGGACATATTTTTCCTGCGTTT
TGGAATTTTTGCGCGAATGGTGTTCGGGGGAGGGAGGGGGGCATAGGGGT
CTTCACGGCAGTGTCTATTAGATGGGCGGTCGCATCTCCTCCCTCGTCTT
CCAACCTCCCTCCAAACGTTCGCACATAAACTCCACCAAATACATCATCC
TACCCACCAGCAAAGGAAACAGAATTCCGGCTTTTTACTTTGACCGGTCG
GCACATATAACTGTGCTGGTATCGCACGGAAACGCCGAAGATTTGG
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Synonyms
Publications