rna317, rna317 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna317
Unique Name	rna317
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2925
Alignment location	CM002455.1:785896..787377 +

Link to JBrowse

Properties


Property Name	Value
Product	ormdl family protein
Orig transcript id	gnl\|cribi\|Naga_100003g180.1742.mrna
Orig protein id	gnl\|cribi\|Naga_100003g180.1742
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:785896..787377 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g180	gene306	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna317	rna317-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30225.1	cds317	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:785896..787377+
coding sequence from alignment at CM002455.1:785896..787377+

mRNA sequence

>rna317 ID=rna317|Name=rna317|organism=Nannochloropsis gaditana|type=mRNA|length=2925bp
ATGATGTGGATGAGATCAAGCAGAGCATGGTGTTCTTGTCGCGGAAGAGG
CCGGATAAAATTTGCTGCATTCTTACCCCTCCGACCTCTCATGACAAGCC
CGAACCGGCACAACCTACTGCCACACGAGAGCGCCTTCCCACCATTGTTC
GTGCAGCCTACTCCATCAGAAGCGCTAACGACTGCAGAAAACAAGAGGAA
GTCATTGATGTCAATGTCGGAAGTGCAATTTGGGCGCGTGCGGAGACGTG
GGAAAATGGCGGAGGGCGCTGTCAAGCCTGGACAACACCGTCGGAAGAAG
TTAGAGAATCTGGGAGTACCCGATGAGGTGGAGCAAGAGCTACGGGATCT
TGCGCATGAGCTTGAAGTCCATGACGCCCTATACTACAATCAAAATGAGC
CGTGCATCACGGACGCGGAGTACGACGAGCTAGCGCGACGATTGGAGGCC
TTAGAGCGCGCCCATCCCCTGCTTGTCCGGGAGCTAGCCTCCCGGACGGG
CTACGTCTCCCGCGGAGAGCGTGTGGGATCCTCCCCTGTCTTTAGCACGG
ATGCGTCAAGCGACATGGGTTCAGGTGCTGGGGCGCGCTTTGCGCCAGTG
AAGCACGGGTGGCCTATGCTGTCGCTCGACAACGCCTTCTCCGAGGAGGA
GGTGGCGGCTTGGGCGACGCGGCTGCAAAGGGCGCTATGCGAAGAGGAGG
TGGCGGAAGGGCGGCAGACCGCTACGTCGGATGATGCGATCGGGGAAGGG
AGAAGCACTGCAAGAGGGGGTCTGGCGGGAGGAGAGACGGAGAGGCCGGT
AACAGGCGCGGGGGGAGTGCACGTGGTCGCGGAGCTCAAGATTGACGGCG
TGTCTTTGAGCTTGCGGTACGAAGATGGCGTGCTTGTTCGCGGTGCAACG
CGAGGTAACGGATTCGTCGGGGAGGATGTGACCGAGAACGTCCACTCCAT
CGCCTCCATCCCGCACCGGCTCCCCCCTCCGTCCACGGACTGTCCACTTC
CCCCGGCCGTGGAGGTTCGGGGCGAGGTCTACCTCCCTCGCCGCGTCTTC
GAGGACCTGAACGAGGCGCGTAAGGCCCAGGGGGCACCCTTGCTCTCCAA
TCCGCGCAATGCAGCCTCGGGTTCTCTCCGACAGCTTGACGTGGCCCTCA
CTCGGGAGCGGCGCCTGGGCTTCTTCGCCTACGGCATCGAGGCCACCGAA
GACACTGGGGTCCATCCGCCTTCCCTTCCGGCCACTCAGGTCGGTGTCCT
CGCCCTCCTCGAGGCCTGGGGCTTTGAAGTCGCTCACCCGTGGGCCCCCT
GTCGGGACCTGCAAGCACTGCGGGCTTTCCACCGGCGTCTGGAGGGAGAG
CGCTCGTCGCTGGCCTTCGACATCGACGGCGTCGTCTACAAGCTCAACGA
TCTGCAGGCGCGGAGGCGGGCGGGTCGGAGCGCACGCGCGCCTCGATGGG
CCATCGCCCACAAGTTCTCACCCCTGGAGGCAGTGACCCGGGTGCGCGCC
GTGGACGTGCAGGTGGGGCGCACGGGGGTGCTAACGCCGGTGGCCGTCCT
GGAGCCAGTGACGGTGGGCGGCGTGGTCATCACACGAGCCAGTCTCCACA
ATTTCCAGGACGTGGCCAGGCGCGACGTGCGAGTGGGGGACTTGGTGGCC
GTCCGCAGGGCTGGGGACGTGATACCGCAGGTACTGGGTCGTGCCAACCT
GACGCTGGCGGCCCAGGGCGCGGACGGTGAGGATGCTTGTTACGGGGCTG
AAATTGATTCCCGCTCCAAGCCGATCAGCACCCCCACTCGCTGTCCGTCG
TGCGCGGGGCCCGTGAGCCAGGAGGAGGACCAGGTGGCAGTTTATTGCCC
TGCCGGCTTGAGCTGCCCCGCGCAGTCCTTGGAGCGGCTGGCGCATTTCG
TCTCTCGGGGAGCTTTCGACATCAAAGGGCTGGGAGGGCGGAGGCTGCAG
GAGCTAAGGAGCTGGGAGATGGTGGAGACACCGACGGACCTCTTCAGTCT
GGCTAGTCGGGAGGCGGCCAAGAAAGAAAGAAGAGCGAGGGGGAGAAGCT
CCTCGGAGGGGTCCGGTGGAAGGGCACCTTACGCTGAGAACGCTGCGTTG
GGGAAGCCAGGGGACACAATGGCGTTGCACGACGGGTCAGATGAGGTCTT
ATTGGAGGAGCGGGCAGGGTGGGGAGAGAAGTCTGTCACCGCGCTCTTCT
CTGCCATCGCCGCGCGACGGAAAATACCCTTGAGTCGATTTATCTTCGCG
CTAGGAGTGACCCATGTAGGCCAAACCACAGCACAAGCTATAGCTGCTCA
CTTCGGGAGTGTCGGCAATTGGTGGGGGGCGATGCAGGCGCTGGAGCAAG
GGGAAGTGGAGGAAGGGAGATGCGGAGTGGAGGACAGGAAGGATATGGAA
GAGCACTTGAATGGGGGGGGTGTGGAGACTAGGGAAGGTGAGAAGAACTT
GCCCAGTAAACAGGTGGCAACTGCACAGGACGCGGGTGGGATGGACACTA
TCGAGGGCATTGGGCCCACGGTGATCGCATCCCTGCGAGCCTTTGTGAGG
GACGAGAGGAACAAACGGACGGTGGAGGCTCTCTTTCGAGAAATCGAAGT
GCTCAATGAGGAGTCGTTTACAGAAAGATCTGACATAGAAGTGAGCGCGG
GCGGACGAGGCCCCCCGCGCGTGGACGGCCCATTAGTGGGAAAGACAGTT
CTCTTCACAGGCGCGTTACAGGGCATGACCCGGTCGGAGGTCGAAGCTCA
GGCACGACAAATGGGGGCAACGCCTGTTAAGACGCTGAGTAAGAAGGTAG
ATATGATTGTGGTGGGTGCAAGTCCTGGAAGTAAGGCCCGAAAGGGCAGG
GATCTGGGAATCGAGCACCTGGAGGAGGCGCAGTGGCTGACCCTCGTTGA
TCGAGCTAGCAAAGGGGTCATCTAG

protein sequence of rna317

>rna317-protein ID=rna317-protein|Name=rna317|organism=Nannochloropsis gaditana|type=polypeptide|length=204bp
MGVRDSGNGLYSGMYFDGDRPASLYNKNVEWLRYPHFWWLYLGFVAFFVT
LLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGL
TLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVF
LGIIPKIPEMHRVRVFGWNKTAGIDDVPDDLLSSPSRPTATAAGGAAAAG
KKNR

mRNA from alignment at CM002455.1:785896..787377+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna317 ID=rna317|Name=rna317|organism=Nannochloropsis gaditana|type=mRNA|length=1482bp|location=Sequence derived from alignment at CM002455.1:785896..787377+ (Nannochloropsis gaditana)
GAGGAGCTCGAGGCCCCGGCGGGTCGGAACCCTCTCGGAGACGCTGCAGC
GCTTCCATCCCTCAGCCGGAACTTTCCATCGCCCCCCCTCGCACGCGACC
CTCGCTCTTCACAACACCCTCCCGTACGATGTCGTTCGTTTCGAAATCAA
CAAACAGGGCCGTTTGTTGGCGGAAAACTCGCTCGCAGCCATTTTCACGG
CCGCAGTCCTAGGCTTGTAATCGTTAAAATGTGAGTATtaagagagagga
agaagttGTCATGAGAACGGCTAGGACTAAGGATCCGTTGTGCTATTGCG
GCTGTCATACATGAATGTATATTATATGCATTACTTGTGCGGCCATGCTG
GAAGCGAGACTTATGGTGCGAtatctttctttttttgctcgGCTCCCTAG
GGGTGTCCGCGACAGTGGCAACGGTTTATACTCGGGAATGTACTTTGACG
GAGACCGGCCAGCATCCCTATACAACAAAAATGTAGAATGGCTACGATAC
CCACACTTTTGGTGGCTGTATCTCGGCTTCGTGGCCTTTTTTGTGACGCT
GCTTCGGCTGACAGTGCTGAGCAAGCCGGAGGATTTGGGGAGGGTACTGA
CGGTGACGCACGTAGTACACAACATGGTGAGGATACGAATAAGCGAGAGG
ATGACAAGCATGTGAGAGGGGCATTTGGGGTTTCAAtttgaaaggaagaa
atgggaaaGACCAGAAATTGTTTTCGACGCTCGTTCAATCCCTCTACAAA
TCTTCAGGTATTTTTCTATCTGTTCCATTGGATCAAGGGCTCCCCCGATA
ACTTTAGCCAAGGTGAATTCAATGGATTAACATTGTGGGAGCAGATCGAG
GATGGAATTCCATGGACCAAAACGAAAAAACTTTTCTTCCTTGTGCACAC
GGCGCTGGTTTTTGCGGCATCCTACGTAACCGATTACGACTTCAGCTATC
TCGCGATCAACGCCCCTGTCTACGTTTTTCTAGGAATCATACCCAAAATT
CCGGAGATGCACCGTGTCCGTGTTTTTGGGTGGAACAAGACGGCAGGCAT
CGATGACGTGCCCGATGacctgctttcctctccatcgcgaCCAACCGCCA
CGGCAGCTGgaggcgctgctgctgcaggaaagaaaaatcgCTGAGACACA
GACACAAAGCGAGATGGAATTGAAACGAATCTCGTGGTTTATACATAAat
caggcagggaggagggcagatTGCGAATGGATTCTGCGCGTTGAACATTG
GAAGGCGTCATGGGTTTTCTGTATCACTCGCCTCATGTAGGATAGTGCGC
GGTTTGCAGCAATCTGGGGACAATTAGATAAATGAAACTGTATAAAATCA
ACACAAGTTTGCCTTCTTACGAGGGGTGCAGACGTTAGCTTTCGCCAGAC
GGCCATCAGCCCCGAGTTATCCTACTATGTGGCTGAGATGAGAAAAGCAT
CGAAAGAATAAATTCAAGTGGAGAAATTGCGA

Coding sequence (CDS) from alignment at CM002455.1:785896..787377+

>rna317 ID=rna317|Name=rna317|organism=Nannochloropsis gaditana|type=CDS|length=1845bp|location=Sequence derived from alignment at CM002455.1:785896..787377+ (Nannochloropsis gaditana)
ATGGGTGTCCGCGACAGTGGCAACGGTTTATACTCGGGAATGTACTTTGA
CGGAGACCGGCCAGCATCCCTATACAACAAAAATGTAGAATGGCTACGAT
ACCCACACTTTTGGTGGCTGTATCTCGGCTTCGTGGCCTTTTTTGTGACG
CTGCTTCGGCTGACAGTGCTGAGCAAGCCGGAGGATTTGGGGAGGGTACT
GACGGTGACGCACGTAGTACACAACATGGTATTTTTCTATCTGTTCCATT
GGATCAAGGGCTCCCCCGATAACTTTAGCCAAGGTGAATTCAATGGATTA
ACATTGTGGGAGCAGATCGAGGATGGAATTCCATGGACCAAAACGAAAAA
ACTTTTCTTCCTTGTGCACACGGCGCTGGTTTTTGCGGCATCCTACGTAA
CCGATTACGACTTCAGCTATCTCGCGATCAACGCCCCTGTCTACGTTTTT
CTAGGAATCATACCCAAAATTCCGGAGATGCACCGTGTCCGTGTTTTTGG
GTGGAACAAGACGGCAGGCATCGATGACGTGCCCGATGacctgctttcct
ctccatcgcgaCCAACCGCCACGGCAGCTGgaggcgctgctgctgcagga
aagaaaaatcgCTGAATGGGTGTCCGCGACAGTGGCAACGGTTTATACTC
GGGAATGTACTTTGACGGAGACCGGCCAGCATCCCTATACAACAAAAATG
TAGAATGGCTACGATACCCACACTTTTGGTGGCTGTATCTCGGCTTCGTG
GCCTTTTTTGTGACGCTGCTTCGGCTGACAGTGCTGAGCAAGCCGGAGGA
TTTGGGGAGGGTACTGACGGTGACGCACGTAGTACACAACATGGTATTTT
TCTATCTGTTCCATTGGATCAAGGGCTCCCCCGATAACTTTAGCCAAGGT
GAATTCAATGGATTAACATTGTGGGAGCAGATCGAGGATGGAATTCCATG
GACCAAAACGAAAAAACTTTTCTTCCTTGTGCACACGGCGCTGGTTTTTG
CGGCATCCTACGTAACCGATTACGACTTCAGCTATCTCGCGATCAACGCC
CCTGTCTACGTTTTTCTAGGAATCATACCCAAAATTCCGGAGATGCACCG
TGTCCGTGTTTTTGGGTGGAACAAGACGGCAGGCATCGATGACGTGCCCG
ATGacctgctttcctctccatcgcgaCCAACCGCCACGGCAGCTGgaggc
gctgctgctgcaggaaagaaaaatcgCTGAATGGGTGTCCGCGACAGTGG
CAACGGTTTATACTCGGGAATGTACTTTGACGGAGACCGGCCAGCATCCC
TATACAACAAAAATGTAGAATGGCTACGATACCCACACTTTTGGTGGCTG
TATCTCGGCTTCGTGGCCTTTTTTGTGACGCTGCTTCGGCTGACAGTGCT
GAGCAAGCCGGAGGATTTGGGGAGGGTACTGACGGTGACGCACGTAGTAC
ACAACATGGTATTTTTCTATCTGTTCCATTGGATCAAGGGCTCCCCCGAT
AACTTTAGCCAAGGTGAATTCAATGGATTAACATTGTGGGAGCAGATCGA
GGATGGAATTCCATGGACCAAAACGAAAAAACTTTTCTTCCTTGTGCACA
CGGCGCTGGTTTTTGCGGCATCCTACGTAACCGATTACGACTTCAGCTAT
CTCGCGATCAACGCCCCTGTCTACGTTTTTCTAGGAATCATACCCAAAAT
TCCGGAGATGCACCGTGTCCGTGTTTTTGGGTGGAACAAGACGGCAGGCA
TCGATGACGTGCCCGATGacctgctttcctctccatcgcgaCCAACCGCC
ACGGCAGCTGgaggcgctgctgctgcaggaaagaaaaatcgCTGA

Synonyms

Publications