EWM30225.1, cds317 (CDS) Nannochloropsis gaditana

Overview
NameEWM30225.1
Unique Namecds317
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:786124..786125 +
Alignment locationCM002455.1:786296..786521 +
Alignment locationCM002455.1:786653..787039 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30225.1
Productormdl family protein
Orig transcript idgnl|cribi|Naga_100003g180.1742.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:786124..786125 +
CM002455.1supercontigCM002455.1:786296..786521 +
CM002455.1supercontigCM002455.1:786653..787039 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0005789endoplasmic reticulum membrane
Vocabulary: INTERPRO
TermDefinition
IPR007203ORMDL
Homology
BLAST of EWM30225.1 vs. NCBI_GenBank
Match: gi|585112884|gb|EWM30225.1| (ormdl family protein [Nannochloropsis gaditana])

HSP 1 Score: 418.698 bits (1075), Expect = 3.640e-148
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query:    1 MGVRDSGNGLYSGMYFDGDRPASLYNKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDDVPDDLLSSPSRPTATAAGGAAAAGKKNR 204
            MGVRDSGNGLYSGMYFDGDRPASLYNKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDDVPDDLLSSPSRPTATAAGGAAAAGKKNR
Sbjct:    1 MGVRDSGNGLYSGMYFDGDRPASLYNKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDDVPDDLLSSPSRPTATAAGGAAAAGKKNR 204          
BLAST of EWM30225.1 vs. NCBI_GenBank
Match: gi|298706389|emb|CBJ29398.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 144.05 bits (362), Expect = 5.136e-40
Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 0
Query:   18 GDRPAS-LYNKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDD 176
            GD  A  + NKN EW++  + W +Y+ F+A   T+  +  +++   + +  T+ +VVH ++ FY FHW KGSPD F+QGE+NGLT WEQ++ G+PWTKTKK   +V T L      V+DY   YLA+N PV   L ++ K P MHRVR+   N T GIDD
Sbjct:   25 GDISAGGMSNKNTEWMQNSYTWVMYVLFIA---TIWGVVHMTQIFSVAKSTTMVNVVHGLITFYFFHWTKGSPDEFTQGEWNGLTFWEQLDAGVPWTKTKKFMMIVPTVLCLIPLVVSDYQPRYLAVNLPVCCIL-LLAKSPLMHRVRILDINATTGIDD 180          
BLAST of EWM30225.1 vs. NCBI_GenBank
Match: gi|566022577|gb|ETI45488.1| (hypothetical protein F443_09920 [Phytophthora parasitica P1569] >gi|567959876|gb|ETK85440.1| hypothetical protein L915_09717 [Phytophthora parasitica] >gi|567988609|gb|ETL38884.1| hypothetical protein L916_09621 [Phytophthora parasitica] >gi|568017812|gb|ETL91989.1| hypothetical protein L917_09544 [Phytophthora parasitica] >gi|568048228|gb|ETM45287.1| hypothetical protein L914_09587 [Phytophthora parasitica] >gi|570326199|gb|ETO74147.1| hypothetical protein F444_10015 [Phytophthora parasitica P1976] >gi|570950055|gb|ETP15312.1| hypothetical protein F441_09869 [Phytophthora parasitica CJ01A1] >gi|570983589|gb|ETP43388.1| hypothetical protein F442_09823 [Phytophthora parasitica P10297] >gi|970645432|gb|KUF85903.1| ORM1 protein 2 [Phytophthora nicotianae] >gi|970660016|gb|KUF97607.1| Ras-related protein RABH1e [Phytophthora nicotianae])

HSP 1 Score: 127.872 bits (320), Expect = 4.127e-34
Identity = 68/151 (45.03%), Postives = 90/151 (59.60%), Query Frame = 0
Query:   26 NKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDD 176
            NKNV W+    FW  Y+  +A     + +   S     G  LT  +V+H +V F + HWIKGSPD+ S G++  LT +EQI+ G PWT TKK   ++ T L  AAS  TDYD  +L IN P++  L I+ K+PE  RVR+FG N T GIDD
Sbjct:    8 NKNVNWMDSRGFWTFYIMLLASLYMAMPIAFPSH----GDALTAVNVIHGVVSFGIMHWIKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYDTRHLLINFPIWATL-ILAKLPEFDRVRIFGINSTVGIDD 153          
BLAST of EWM30225.1 vs. NCBI_GenBank
Match: gi|301091281|ref|XP_002895828.1| (ORM1-like protein [Phytophthora infestans T30-4] >gi|262096539|gb|EEY54591.1| ORM1-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 127.487 bits (319), Expect = 6.941e-34
Identity = 69/151 (45.70%), Postives = 93/151 (61.59%), Query Frame = 0
Query:   26 NKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDD 176
            NKNV W+    FW  Y+  +A   +L     ++ P   G  LT  +V+H +V F + HWIKGSPD+ S G++  LT +EQI+ G PWT TKK   ++ T L  AAS  TDYD  +L IN P++  L I+ K+PE+ RVR+FG N T GIDD
Sbjct:    8 NKNVNWMDSRGFWTFYIMLLA---SLYMAMPIAFPTH-GDALTAVNVIHGVVSFGIMHWIKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYDTLHLLINFPIWATL-ILAKLPELDRVRIFGINSTVGIDD 153          
BLAST of EWM30225.1 vs. NCBI_GenBank
Match: gi|695414951|ref|XP_009526436.1| (hypothetical protein PHYSODRAFT_354575 [Phytophthora sojae] >gi|348677561|gb|EGZ17378.1| hypothetical protein PHYSODRAFT_354575 [Phytophthora sojae])

HSP 1 Score: 127.102 bits (318), Expect = 9.503e-34
Identity = 66/151 (43.71%), Postives = 91/151 (60.26%), Query Frame = 0
Query:   26 NKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDD 176
            NKNV W+    FW  Y+  +A     + +   +     G  LT  +V+H +V F + HW+KGSPD+ S G++  LT +EQI+ G PWT TKK   ++ T L  AAS  TDYD  +L IN P++  L I+ K+PE+ RVR+FG N T GIDD
Sbjct:    8 NKNVNWMDSRGFWTFYIMLLASLYMAMPIIFPTH----GDALTAVNVIHGVVSFGIMHWVKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYDTRHLLINFPIWATL-ILAKLPELDRVRIFGINSTVGIDD 153          
BLAST of EWM30225.1 vs. NCBI_GenBank
Match: gi|1214712538|gb|OWZ23474.1| (Alpha-1-acid glycoprotein 1-like protein [Phytophthora megakarya])

HSP 1 Score: 126.716 bits (317), Expect = 1.219e-33
Identity = 68/151 (45.03%), Postives = 89/151 (58.94%), Query Frame = 0
Query:   26 NKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDD 176
            NKNV W+    FW  Y+  +A     + +   S     G  LT   V+H +V F + HWIKGSPD+ S G++  LT +EQI+ G PWT TKK   ++ T L  AAS  TDYD  +L IN P++  L I+ K+PE  RVR+FG N T GIDD
Sbjct:    8 NKNVNWMDSRGFWTFYILLLASLYMAMPIVFPSH----GDALTAVSVIHGVVSFGIMHWIKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYDTRHLLINFPIWATL-ILAKLPEFDRVRIFGINSTVGIDD 153          
BLAST of EWM30225.1 vs. NCBI_GenBank
Match: gi|635361581|emb|CCI49500.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 120.168 bits (300), Expect = 9.205e-31
Identity = 64/154 (41.56%), Postives = 93/154 (60.39%), Query Frame = 0
Query:   26 NKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKP--EDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNF-SQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDD 176
            NKNV W+    FW        F+V ++ ++ ++ P       V T  +V+H ++ F + HWIKGSPD+  S G++  LT +EQI++  PW+ TKK   +V T +   AS  TDYD  +L IN P++ F+ I+ K+PE HRVR+FG N T GIDD
Sbjct:   25 NKNVNWMETRGFW-------TFYVLVIGMSYMAMPFFVPANEVWTAVNVIHGLISFGIMHWIKGSPDDSNSMGDYRELTFYEQIDENHPWSGTKKFLMVVPTMIFMLASVTTDYDTQHLMINFPIW-FVLILAKLPEFHRVRIFGINSTVGIDD 170          
BLAST of EWM30225.1 vs. NCBI_GenBank
Match: gi|635361580|emb|CCI49499.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 119.398 bits (298), Expect = 1.138e-30
Identity = 64/154 (41.56%), Postives = 93/154 (60.39%), Query Frame = 0
Query:   26 NKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKP--EDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNF-SQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDD 176
            NKNV W+    FW        F+V ++ ++ ++ P       V T  +V+H ++ F + HWIKGSPD+  S G++  LT +EQI++  PW+ TKK   +V T +   AS  TDYD  +L IN P++ F+ I+ K+PE HRVR+FG N T GIDD
Sbjct:   11 NKNVNWMETRGFW-------TFYVLVIGMSYMAMPFFVPANEVWTAVNVIHGLISFGIMHWIKGSPDDSNSMGDYRELTFYEQIDENHPWSGTKKFLMVVPTMIFMLASVTTDYDTQHLMINFPIW-FVLILAKLPEFHRVRIFGINSTVGIDD 156          
BLAST of EWM30225.1 vs. NCBI_GenBank
Match: gi|325180966|emb|CCA15375.1| (ORM1like protein putative [Albugo laibachii Nc14])

HSP 1 Score: 118.627 bits (296), Expect = 4.888e-30
Identity = 65/152 (42.76%), Postives = 89/152 (58.55%), Query Frame = 0
Query:   26 NKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDN-FSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDD 176
            NKNV W+    FW  Y+  +      +   V +       V T  +VVH +V F + HWIKGSPD+  S G++  LT +EQI++  PW+ TKK   +V T +   AS  TDYD  +L IN P++ F+ I+ K+PE HRVR+FG N T GIDD
Sbjct:   46 NKNVNWMETRGFWTFYVLVIGMLYMAMPFLVPA-----NDVWTAVNVVHGLVSFGIMHWIKGSPDDSMSMGDYRELTFYEQIDEDHPWSGTKKFLIVVPTVIFMLASVTTDYDTHHLMINFPIW-FVLILAKLPEFHRVRIFGINSTVGIDD 191          
BLAST of EWM30225.1 vs. NCBI_GenBank
Match: gi|953502729|emb|CEG50444.1| (orm1-like protein [Plasmopara halstedii])

HSP 1 Score: 115.546 bits (288), Expect = 1.148e-29
Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 0
Query:   64 GRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDD 176
            G  LT  +V+H +V F + HW+KGSPD+ S G++  LT +EQI+ G PWT TKK   ++ T L  AAS  TDY+  +L +N P++  L I+ K+PE+ RVR+FG N T GIDD
Sbjct:    9 GDALTAVNVIHGVVSFGIMHWVKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYNTRHLLVNFPIWATL-ILAKLPELDRVRIFGINSTVGIDD 120          
The following BLAST results are available for this feature:
BLAST of EWM30225.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112884|gb|EWM30225.1|3.640e-148100.00ormdl family protein [Nannochloropsis gaditana][more]
gi|298706389|emb|CBJ29398.1|5.136e-4045.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|566022577|gb|ETI45488.1|4.127e-3445.03hypothetical protein F443_09920 [Phytophthora para... [more]
gi|301091281|ref|XP_002895828.1|6.941e-3445.70ORM1-like protein [Phytophthora infestans T30-4] >... [more]
gi|695414951|ref|XP_009526436.1|9.503e-3443.71hypothetical protein PHYSODRAFT_354575 [Phytophtho... [more]
gi|1214712538|gb|OWZ23474.1|1.219e-3345.03Alpha-1-acid glycoprotein 1-like protein [Phytopht... [more]
gi|635361581|emb|CCI49500.1|9.205e-3141.56unnamed protein product [Albugo candida][more]
gi|635361580|emb|CCI49499.1|1.138e-3041.56unnamed protein product [Albugo candida][more]
gi|325180966|emb|CCA15375.1|4.888e-3042.76ORM1like protein putative [Albugo laibachii Nc14][more]
gi|953502729|emb|CEG50444.1|1.148e-2948.67orm1-like protein [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna317rna317Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications