rna3164, rna3164 (mRNA) Nannochloropsis gaditana

Overview
Namerna3164
Unique Namerna3164
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1904
Alignment locationCM002460.1:890666..892360 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100101g9.9057.mrna
Orig protein idgnl|cribi|Naga_100101g9.9057
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:890666..892360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100101g9gene3041Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27519.1cds3156Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3164rna3164-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3164 ID=rna3164|Name=rna3164|organism=Nannochloropsis gaditana|type=mRNA|length=1904bp
TCACAGTGTTGATACCCGCATATTTCCAAGAAAGCTGACAGTTAAATACA
CTTGTCGGTGCTCCATCACTCATAAAAAAATGAACGAGAAGAGAGAAGCA
CTCCAAGAACAGCCGGAGGAAGCAACGTTACACCCCCAACCATGTCATGA
GCCTGCTGGACTGCGGGAATCTTGCGTGAAAACAATAACCCGACATTTCG
ACGTTTTAACACTCCAACGATATCGAAATTGGGTCATTCCTGTGGATCTC
TTCATGCAGATATTGCGAGGGTGCCAGTCGATCGCGTGGGTAAATTTAGC
AGACACCATGCTTGGAGTGGTGAAAAATTTGCCATGTCTGCAGGTTCCTG
AAGTCGACGAAGTATTCTGGAAGACAATATGCGAAGCTACGCTCAGCCCT
ACTACACCAATTGCTGTGCCCTATTCATCACTCGTCCACAATGTTGTGCG
ACATACGGTGTTTTTGAGGAACTACTCAGCAACGGCAGAAATGAATGGCG
GAGTGCCAGGGGATGCACTAAAGGAGGAGGTGTGCGGACAAATGGCCCAC
ATGAAAACAGCTAGCTTTCAGGGCCAGGCATGTGGTCAGACGCAAAAGAA
CGGGGATACCACATGCCTTCCAGTTAACAAGAAAGGCAAAATTACGAAGC
TCGAGGGGCATATCAGCAGCGGTGAAGGTTTGACTGGCCGTCTTCACGAA
AGAAATATACGAAATGATGAATCTTTAGACATCGAAGGACAAAGAAATGG
ACATAAAACGTCGAGCGAAGGCGGAAGCTCTTGCAGCGCCACCACAAGAA
TGCCTAGGATGCAACAAAAAGATGGAGACGGAGACCATGCGGCCGCTTTA
CGTGTCTTACAAGAGTTGAGAGATATTCCAGTATCTGTGCAGCTCTTGAA
AGATGCAAATGGGGTCTGCCAGGTCGTGAACCAGGTTAGCAAATTAGTGC
CAAGCGCGAAGGGGGATAAGGGGGCAGGAGGAGGCTCTGTCGGCGAAGGA
CAAGCAATGGAGGAGGTCGTTCAGGCAGCCAGACGGCTTCGGCGGAAATG
GAAGGCTGTGGTGCGCGAGGAGAGTCGGACCGATAGTAAAGGTGTCAGGG
GCGAGAAAGCCTTCATGGGTTCGGTCGAACTAGGAGCACGGGCGGTAAGT
GTGCAAACCTGGATGGATGTCTACATCTTCGCACGGGAATACGAAATGTA
CCGACAGCAGTGTATCGGCAAAAGAGCATTAGCATTGGCGCATGAGCACG
ACTCCAAAAAGCGACGGATGCAGAATATCGAAGAGAAGCTTGGGGACGCG
GCTGCGATTGAAAAGGAGATCTGGAAAGGCAAGCCCGCAGTAGGGAATAC
CGAACGCATTCGAAAACTGATAAAATATCGCCCGACCATGTCCGTGGCAG
TCGCGCAAAAAGCCTTTGGTGGACTCAAATTTGTACCTCCGAAAAAGAAA
AAGCATTTTAAGGTGCTCAAGGAGACAAGCTAATAAGCTGATCGGGGGAC
AACGCACGCAGTAGGAAAAAGGGACTGTTGATCTGTACAGAAGAGTGGCT
CTCTTGGTCAGTTAATCATTTTTGAAATCTTGGAAATGGTGCTTGACTAG
AGGTTACAAAAAATTTGTACAGCGCAGGTTGAAAGGTGAGTTGTATACTG
GACACAAGAAATAGCTTGAGATAATTTTCGCCTCCTAGAAACCCAAAATA
AGCGACATGCTTGCTTTGGGTATTACGCGTTTCAAAACCGGTCCTTTACC
ATTCGTCTTGAATGCTTTTTATCTCTACTCGTCAAATGTGAGATCACCAC
AAATCACAATACCCTGGCTCTACATGACTGTCTGACCGCGCGGAGGAACA
AAGGAGGGCCCGGCTGGTGCCATCTCAGCATGCAACGGCCCCGTGGCGGG
CTCC
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protein sequence of rna3164

>rna3164-protein ID=rna3164-protein|Name=rna3164|organism=Nannochloropsis gaditana|type=polypeptide|length=414bp
MTPNSAFQNLRDTATNILSAQKDMQASERTSIVRVDHEAVGRLAAQFSLS
EIRDKVARVGLPLKFPRPLDELNFHAMLSLLSFGKAYEGDFISQSGLLRE
SARDTVLFGLIGLHLSKTDLRAGFLMTVTRSDVASYFGIEPMENVPHDSM
PAIRVERPGPLSRLVDELVTSMNTVGARLKELGEPDLAHFILAAMRGEEV
PTVARLVTALDAAFPSTFGAPLPCPGSRTETGFHCRKKSLMLAGELYHRL
RHSFAEFDFQDFSRAPGYATPALITFLVSRGVLCPMEDDGGDEQAHAAAV
ARLLENPDNVAPLTAGTMVAMDELAVRMAEAATEGEVEGSHASSTEKAVV
PLDLSYFLDEMWSKQESERRRQQTEPAGNGEQSCAATEPATGPLHAEMAP
AGPSFVPPRGQTVM
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mRNA from alignment at CM002460.1:890666..892360-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3164 ID=rna3164|Name=rna3164|organism=Nannochloropsis gaditana|type=mRNA|length=1695bp|location=Sequence derived from alignment at CM002460.1:890666..892360- (Nannochloropsis gaditana)
CGCTCCCGGCGAGAAAAGTCAGACACAACAAGAACAGGAAGGCAAGTAAG
CACGGGATAAGTGGGCGATAAAGGTGTGCAACTGTTTGCATGGCAAACAG
GGTCAAGGTGCTAAGTATGCTGCTTTGTACCGTGAATAGGAAGTGAACCG
CTTACAAAAAGTCTCACATTGCCCCAACCAGGCATAGCTAAAAGTATCTG
ATCCCCGCATAGAATATGACGCCCAACTCGGCCTTCCAAAACTTACGCGA
CACGGCAACCAACATCTTGAGCGCTCAGAAGGACATGCAGGCATCAGAGA
GGACCAGCATCGTCCGTGTCGACCACGAGGCAGTGGGAAGATTAGCGGCT
CAATTTTCCTTGAGTGAGATCCGTGACAAAGTTGCACGAGTTGGGCTGCC
GCTAAAATTTCCAAGACCTTTGGATGAATTAAATTTTCATGCCATGTTAT
CATTGTTAAGCTTTGGGAAGGCGTATGAGGGCGATTTCATTAGTCAATCG
GGCCTTCTGAGAGAATCGGCGCGGGATACGGTACTCTTCGGCTTGATCGG
TTTGCATTTAAGCAAGACAGATCTACGGGCTGGCTTTCTCATGACAGTCA
CCCGCTCGGACGTGGCGAGTTACTTCGGAATCGAACCCATGGAAAATGTG
CCCCATGATAGCATGCCTGCCATTCGTGTCGAGCGTCCAGGTCCTTTAAG
TCGATTAGTCGACGAGCTGGTCACGTCTATGAACACTGTGGGCGCACGAC
TGAAGGAACTCGGTGAGCCGGACCTCGCGCACTTCATCTTGGCTGCCATG
CGGGGGGAGGAAGTCCCGACGGTGGCCAGACTGGTGACCGCGTTGGATGC
TGCTTTTCCCTCTACCTTCGGTGCGCCTTTGCCGTGTCCTGGGTCCAGGA
CTGAGACGGGGTTTCATTGCCGCAAGAAGTCTTTGATGCTGGCAGGAGAG
CTTTACCATCGCCTGCGACACAGCTTTGCTGAATTCGACTTCCAAGATTT
CTCACGGGCACCGGGCTATGCGACCCCCGCCCTCATCACGTTCTTGGTCT
CTCGAGGTGTCCTCTGCCCCATGGAGGACGACGGGGGGGATGAACAAGCC
CACGCGGCCGCAGTCGCTCGGCTGCTAGAGAATCCTGACAACGTGGCACC
TTTGACGGCCGGGACGATGGTGGCGATGGACGAGCTAGCCGTCAGGATGG
CGGAGGCAGCGACAGAGGGCGAGGTGGAGGGCAGCCATGCCTCCTCGACG
GAGAAGGCGGTGGTCCCCTTGGACCTCAGCTATTTCCTGGACGAAATGTG
GTCCAAGCAGGAGAGTGAAAGACGGCGTCAGCAAACAGAACCTGCTGGAA
ATGGGGAGCAATCATGTGCTGCAACGGAGCCCGCCACGGGGCCGTTGCAT
GCTGAGATGGCACCAGCCGGGCCCTCCTTTGTTCCTCCGCGCGGTCAGAC
AGTCATGTAGAGCCAGGGTATTGTGATTTGTGGTGATCTCACATTTGACG
AGTAGAGATAAAAAGCATTCAAGACGAATGGTAAAGGACCGGTTTTGAAA
CGCGTAATACCCAAAGCAAGCATGTCGCTTATTTTGGGTTTCTAGGAGGC
GAAAATTATCTCAAGCTATTTCTTGTGTCCAGTATACAACTCACCTTTCA
ACCTGCGCTGTACAAATTTTTTGTAACCTCTAGTCAAGCACCATT
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Coding sequence (CDS) from alignment at CM002460.1:890666..892360-

>rna3164 ID=rna3164|Name=rna3164|organism=Nannochloropsis gaditana|type=CDS|length=1245bp|location=Sequence derived from alignment at CM002460.1:890666..892360- (Nannochloropsis gaditana)
ATGACGCCCAACTCGGCCTTCCAAAACTTACGCGACACGGCAACCAACAT
CTTGAGCGCTCAGAAGGACATGCAGGCATCAGAGAGGACCAGCATCGTCC
GTGTCGACCACGAGGCAGTGGGAAGATTAGCGGCTCAATTTTCCTTGAGT
GAGATCCGTGACAAAGTTGCACGAGTTGGGCTGCCGCTAAAATTTCCAAG
ACCTTTGGATGAATTAAATTTTCATGCCATGTTATCATTGTTAAGCTTTG
GGAAGGCGTATGAGGGCGATTTCATTAGTCAATCGGGCCTTCTGAGAGAA
TCGGCGCGGGATACGGTACTCTTCGGCTTGATCGGTTTGCATTTAAGCAA
GACAGATCTACGGGCTGGCTTTCTCATGACAGTCACCCGCTCGGACGTGG
CGAGTTACTTCGGAATCGAACCCATGGAAAATGTGCCCCATGATAGCATG
CCTGCCATTCGTGTCGAGCGTCCAGGTCCTTTAAGTCGATTAGTCGACGA
GCTGGTCACGTCTATGAACACTGTGGGCGCACGACTGAAGGAACTCGGTG
AGCCGGACCTCGCGCACTTCATCTTGGCTGCCATGCGGGGGGAGGAAGTC
CCGACGGTGGCCAGACTGGTGACCGCGTTGGATGCTGCTTTTCCCTCTAC
CTTCGGTGCGCCTTTGCCGTGTCCTGGGTCCAGGACTGAGACGGGGTTTC
ATTGCCGCAAGAAGTCTTTGATGCTGGCAGGAGAGCTTTACCATCGCCTG
CGACACAGCTTTGCTGAATTCGACTTCCAAGATTTCTCACGGGCACCGGG
CTATGCGACCCCCGCCCTCATCACGTTCTTGGTCTCTCGAGGTGTCCTCT
GCCCCATGGAGGACGACGGGGGGGATGAACAAGCCCACGCGGCCGCAGTC
GCTCGGCTGCTAGAGAATCCTGACAACGTGGCACCTTTGACGGCCGGGAC
GATGGTGGCGATGGACGAGCTAGCCGTCAGGATGGCGGAGGCAGCGACAG
AGGGCGAGGTGGAGGGCAGCCATGCCTCCTCGACGGAGAAGGCGGTGGTC
CCCTTGGACCTCAGCTATTTCCTGGACGAAATGTGGTCCAAGCAGGAGAG
TGAAAGACGGCGTCAGCAAACAGAACCTGCTGGAAATGGGGAGCAATCAT
GTGCTGCAACGGAGCCCGCCACGGGGCCGTTGCATGCTGAGATGGCACCA
GCCGGGCCCTCCTTTGTTCCTCCGCGCGGTCAGACAGTCATGTAG
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Synonyms
Publications