rna3163, rna3163 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3163
Unique Name	rna3163
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2045
Alignment location	CM002460.1:889082..890985 +

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Properties


Property Name	Value
Product	Transcription factor IIS
Orig transcript id	gnl\|cribi\|Naga_100101g10.9049.mrna
Orig protein id	gnl\|cribi\|Naga_100101g10.9049
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:889082..890985 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100101g10	gene3040	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3163	rna3163-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27511.1	cds3155	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:889082..890985+
coding sequence from alignment at CM002460.1:889082..890985+

mRNA sequence

>rna3163 ID=rna3163|Name=rna3163|organism=Nannochloropsis gaditana|type=mRNA|length=2045bp
TATCGAAGCTTGAATGTATGTCTCGACGTACTACGAATAAAAATTCATAT
TCTCTGCAATCCAAGAGTGTCTGATTGGTGTTGTCTTTTGTGTGTTTTCT
TTTCAACATTTGAACTCAACGTCCAACATTTCCATAGTACTGGACTTAGA
CGTCATGTATCTCTATTAATCCTCATAATGCTATCGTCGGTCACAGGCTG
TTCGATTTTGCGATCAGCAACCAAATAATGGTGCAGTTCCAACTCTTATT
TGTTTGGCTAGCCTTATCCTTTGGAGCTGGGGAGCACCAACCTAGGCCAC
CATCGACTACGACTGACAACACTGTGCTATCATCCATGCTGGGACCTACC
CCTGGCAAAGAATTGTTTTTCCGAGACTTCTGGCAAATTAAACCGGCCGT
TATTCGGAGGCATAATCCAACATTTTTCCAACCAATCATGCGGCAGAGTG
ACTTGGATGCTATACTGGTGCAAAGCTCAACCGCTTCAATGTTGAGAGGT
TTGAGTTCTAGCGAACCAAAATGCGATCAGGCAGAACATGACGCAGAAAG
TAAAAGCTGGACACTAGTCAAACGCATAAAGGGCGTCGATGGCGAATGGT
GGTCGAGCACTCCTGCTACCGCAGCGCTACGGCAGATTTTTGGTCTCGAC
GATGATTCGACGGATGCAGAGGTCGCGCATGCCGCCTTTTCACGAGGTTA
TTCTCTGGTCATAAACAATATTGAGGATAAGTTGTACGGCACATCCCGCT
TGGCTCTTGCTTTTGAAGGGGAACTGGGCTACCGCACGTCCATCAACTGC
TACTTTACCCCTCCTGGCAGCCAGGCTTTTGAGGCACATTTTGATTGGAT
GGATGCATTCATCCTTCAAGTAGAGGGCTCCAAGCGATGGCGTCTATACG
ATGCACTGGTGGAGCAACCGCGTCCGGACATGCAATTCAAGCCGAGCCTA
CACGACATCGGAGAGCCATACATTGACTTCGTCCTCGAGCCTGGGGATTT
GCTCTACCTGCCCTCTGGAACGATCCATGAGGCGCTCAATGAGAATGACG
GGGGCCTGGGAAATTCGTCGCTTCATTTGACAGTAGGGATTGAAACTACG
GTGTTGGGCTCATGGGAATCTTTGCTCTTGGAAGTGTTGACAGTGTTGAG
TGGGGGAAGTGCGGAAGACAGAGACCTTCATTCCACATGGTCAAATGTGT
CGGCTCTGCAGTGTTCCAGGGGACCAGCTGGCGAAAATGCAATCGACGAT
TCTCCAAACCTACCTTTTGAAAACGTCTCGCAGGTCTTCTCATCTGTTGT
CACACCCAAGATCGAGGACTGTAACGGAGCAACCTTAAGGCAAGGAGATT
TAATAGCCCTTGTTTTGATGCAAGTTGCTATGCAAGAAAGAGCTTTACGC
CGGCCCGTCCCGCTGAAAAACTTGATGAAAAGAAATGGTAAGTATAAACG
ATTGACGCACCTGACAGATGTCGTTTCTCTACTGAAAGAGCAAGGAGACG
TCCGAGGCGCTTGGGATGCCTTCATTCGCGAAAGGAAAAGCGTGCCTCGC
AATTTAGAGGTCTTCGGGAAGAGCGATTCTAAGGATAGACCAGCGCATGG
GGAAGAAATGAAGAACCGTCTTTTGGGAGCAGCTGCAGCATGGTCTGATA
TTGAAATACCAGACGAAATCCAGGATGATTTCCTTAAAGCGCTAGATTGT
CTGCAGGGAGCACTTTCAGACTCGGTGCAAACAAAAGCTATCTTTTCCCA
TTTCGAACACGTGTGTCAGCGGGATCTGGTTCAGCGCCAGGAACAACGAG
AACTTTTGTTGGAAGCAGGAGTTTGGCAGGCCGATATAAACGCAGTAGAT
GGAAAATTGCAAGCTTCTCAAATCTATGGAGTAGGATCACAAACTCCCAC
GGACTTTTCAAGACAATAGCAAGTTACGAACAGAATCAAATATCATAAAC
TGTGACATTTTATGTAGACGCATGAAAAAATCAACTGCAATTGCGTCTCT
ACTGGATTTATATTAAATTAAAGTAAATATTTGCACACAGCTCCA

protein sequence of rna3163

>rna3163-protein ID=rna3163-protein|Name=rna3163|organism=Nannochloropsis gaditana|type=polypeptide|length=467bp
MNEKREALQEQPEEATLHPQPCHEPAGLRESCVKTITRHFDVLTLQRYRN
WVIPVDLFMQILRGCQSIAWVNLADTMLGVVKNLPCLQVPEVDEVFWKTI
CEATLSPTTPIAVPYSSLVHNVVRHTVFLRNYSATAEMNGGVPGDALKEE
VCGQMAHMKTASFQGQACGQTQKNGDTTCLPVNKKGKITKLEGHISSGEG
LTGRLHERNIRNDESLDIEGQRNGHKTSSEGGSSCSATTRMPRMQQKDGD
GDHAAALRVLQELRDIPVSVQLLKDANGVCQVVNQVSKLVPSAKGDKGAG
GGSVGEGQAMEEVVQAARRLRRKWKAVVREESRTDSKGVRGEKAFMGSVE
LGARAVSVQTWMDVYIFAREYEMYRQQCIGKRALALAHEHDSKKRRMQNI
EEKLGDAAAIEKEIWKGKPAVGNTERIRKLIKYRPTMSVAVAQKAFGGLK
FVPPKKKKHFKVLKETS

mRNA from alignment at CM002460.1:889082..890985+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3163 ID=rna3163|Name=rna3163|organism=Nannochloropsis gaditana|type=mRNA|length=1904bp|location=Sequence derived from alignment at CM002460.1:889082..890985+ (Nannochloropsis gaditana)
TCACAGTGTTGATACCCGCATATTTCCAAGAAAGCTGACAGTTAAATACA
CTTGTCGGTGCTCCATCACTCATAAAAAAATGaacgagaagagagaagcA
CTCCAAGAACAGCCGGAGGAAGCAACGTTACACCCCCAACCATGTCATGA
GCCTGCTGGACTGCGGGAATCTTGCGTGAAAACAATAACCCGACATTTCG
ACGTTTTAACACTCCAACGATATCGAAATTGGGTCATTCCTGTGGATCTC
TTCATGCAGATATTGCGAGGGTGCCAGTCGATCGCGTGGGTAAATTTAGC
AGACACCATGCTTGGAGTGGTGAAAAATTTGCCATGTCTGCAGGTTCCTG
AAGTCGACGAAGTATTCTGGAAGACAATATGCGAAGCTACGCTCAGCCCT
ACTACACCAATTGCTGTGCCCTATTCATCACTCGTCCACAATGTTGTGCG
ACATACGGTGTTTTTGAGGAACTACTCAGCAACGGCAGAAATGAATGGCG
GAGTGCCAGGGGATGCActaaaggaggaggtgtgcGGACAAATGGCCCAC
ATGAAAACAGCTAGCTTTCAGGGCCAGGCATGTGGTCAGACGCAAAAGAA
CGGGGATACCACATGCCTTCCAGTTAACAAGAAAGGCAAAATTACGAAGC
TCGAGGGGCATATCAGCAGCGGTGAAGGTTTGACTGGCCGTCTTCACGAA
AGAAATATACGAAATGATGAATCTTTAGACATCGAAGGACAAAGAAATGG
ACATAAAACGTCGAGCGAAGGCGGAAGCTCTTGCAGCGCCACCACAAGAA
TGCCTAGGATGCAACAAAAAGATGGAGACGGAGACCATGCGGCCGCTTTA
CGTGTCTTACAAGAGTTGAGAGATATTCCAGTATCTGTGCAGCTCTTGAA
AGATGCAAATGGGGTCTGCCAGGTCGTGAACCAGGTTAGCAAATTAGTGC
CAAGCGCGAAGGGGGAtaagggggcaggaggaggctctgtCGGCGAAGGA
CAAGcaatggaggaggtcgtTCAGGCAGCCAGACGGCTTCGGCGGAAATG
GAAGGCTGTGGTGCGCGAGGAGAGTCGGACCGATAGTAAAGGTGTCAGGG
GCGAGAAAGCCTTCATGGGTTCGGTCGAACTAGGAGCACGGGCGGTAAGT
GTGCAAACCTGGATGGATGTCTACATCTTCGCACGGGAATACGAAATGTA
CCGACAGCAGTGTATCGGCAAAAGAGCATTAGCATTGGCGCATGAGCACG
ACTCCAAAAAGCGACGGATGCAGAATATCGAAGAGAAGCTTGGGGACGCG
GCTGCGATTGAAAAGGAGATCTGGAAAGGCAAGCCCGCAGTAGGGAATAC
CGAACGCATTCGAAAACTGATAAAATATCGCCCGACCATGTCCGTGGCAG
TCGCGCAAAAAGCCTTTGGTGGACTCAAATTTGTACCtccgaaaaagaaa
aagcattTTAAGGTGCTCAAGGAGACAAGCTAATAAGCTGATCGGGGGAC
AACGCACGCAGTAGGAAAAAGGGACTGTTGATCTGTACAGAAGAGTGGCT
CTCTTGGTCAGTTAATCATTTTTGAAATCTTGGAAATGGTGCTTGACTAG
AGGTTACAAAAAATTTGTACAGCGCAGGTTGAAAGGTGAGTTGTATACTG
GACACAAGAAATAGCTTGAGATAATTTTCGCCTCCTAGAAACCCAAAATA
AGCGACATGCTTGCTTTGGGTATTACGCGTTTCAAAACCGGTCCTTTACC
ATTCGTCTTGAATGCTTTTTATCTCTACTCGTCAAATGTGAGATCACCAC
AAATCACAATACCCTGGCTCTACATGACTGTCTGACCGCGCGGAGGAACA
AAGGAGGGCCCGGCTGGTGCCATCTCAGCATGCAACGGCCCCGTGGCGGG
CTCC

Coding sequence (CDS) from alignment at CM002460.1:889082..890985+

>rna3163 ID=rna3163|Name=rna3163|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002460.1:889082..890985+ (Nannochloropsis gaditana)
ATGaacgagaagagagaagcACTCCAAGAACAGCCGGAGGAAGCAACGTT
ACACCCCCAACCATGTCATGAGCCTGCTGGACTGCGGGAATCTTGCGTGA
AAACAATAACCCGACATTTCGACGTTTTAACACTCCAACGATATCGAAAT
TGGGTCATTCCTGTGGATCTCTTCATGCAGATATTGCGAGGGTGCCAGTC
GATCGCGTGGGTAAATTTAGCAGACACCATGCTTGGAGTGGTGAAAAATT
TGCCATGTCTGCAGGTTCCTGAAGTCGACGAAGTATTCTGGAAGACAATA
TGCGAAGCTACGCTCAGCCCTACTACACCAATTGCTGTGCCCTATTCATC
ACTCGTCCACAATGTTGTGCGACATACGGTGTTTTTGAGGAACTACTCAG
CAACGGCAGAAATGAATGGCGGAGTGCCAGGGGATGCActaaaggaggag
gtgtgcGGACAAATGGCCCACATGAAAACAGCTAGCTTTCAGGGCCAGGC
ATGTGGTCAGACGCAAAAGAACGGGGATACCACATGCCTTCCAGTTAACA
AGAAAGGCAAAATTACGAAGCTCGAGGGGCATATCAGCAGCGGTGAAGGT
TTGACTGGCCGTCTTCACGAAAGAAATATACGAAATGATGAATCTTTAGA
CATCGAAGGACAAAGAAATGGACATAAAACGTCGAGCGAAGGCGGAAGCT
CTTGCAGCGCCACCACAAGAATGCCTAGGATGCAACAAAAAGATGGAGAC
GGAGACCATGCGGCCGCTTTACGTGTCTTACAAGAGTTGAGAGATATTCC
AGTATCTGTGCAGCTCTTGAAAGATGCAAATGGGGTCTGCCAGGTCGTGA
ACCAGGTTAGCAAATTAGTGCCAAGCGCGAAGGGGGAtaagggggcagga
ggaggctctgtCGGCGAAGGACAAGcaatggaggaggtcgtTCAGGCAGC
CAGACGGCTTCGGCGGAAATGGAAGGCTGTGGTGCGCGAGGAGAGTCGGA
CCGATAGTAAAGGTGTCAGGGGCGAGAAAGCCTTCATGGGTTCGGTCGAA
CTAGGAGCACGGGCGGTAAGTGTGCAAACCTGGATGGATGTCTACATCTT
CGCACGGGAATACGAAATGTACCGACAGCAGTGTATCGGCAAAAGAGCAT
TAGCATTGGCGCATGAGCACGACTCCAAAAAGCGACGGATGCAGAATATC
GAAGAGAAGCTTGGGGACGCGGCTGCGATTGAAAAGGAGATCTGGAAAGG
CAAGCCCGCAGTAGGGAATACCGAACGCATTCGAAAACTGATAAAATATC
GCCCGACCATGTCCGTGGCAGTCGCGCAAAAAGCCTTTGGTGGACTCAAA
TTTGTACCtccgaaaaagaaaaagcattTTAAGGTGCTCAAGGAGACAAG
CTAA

Synonyms

Publications