EWM27511.1, cds3155 (CDS) Nannochloropsis gaditana

Overview
NameEWM27511.1
Unique Namecds3155
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:889161..890564 +

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Properties
Property NameValue
Protein idEWM27511.1
ProductTranscription factor IIS
Orig transcript idgnl|cribi|Naga_100101g10.9049.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:889161..890564 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017923TFIIS_N
Homology
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BLAST of EWM27511.1 vs. NCBI_GenBank
Match: gi|585109777|gb|EWM27511.1| (Transcription factor IIS [Nannochloropsis gaditana])

HSP 1 Score: 971.844 bits (2511), Expect = 0.000e+0
Identity = 467/467 (100.00%), Postives = 467/467 (100.00%), Query Frame = 0 
Query:    1 MNEKREALQEQPEEATLHPQPCHEPAGLRESCVKTITRHFDVLTLQRYRNWVIPVDLFMQILRGCQSIAWVNLADTMLGVVKNLPCLQVPEVDEVFWKTICEATLSPTTPIAVPYSSLVHNVVRHTVFLRNYSATAEMNGGVPGDALKEEVCGQMAHMKTASFQGQACGQTQKNGDTTCLPVNKKGKITKLEGHISSGEGLTGRLHERNIRNDESLDIEGQRNGHKTSSEGGSSCSATTRMPRMQQKDGDGDHAAALRVLQELRDIPVSVQLLKDANGVCQVVNQVSKLVPSAKGDKGAGGGSVGEGQAMEEVVQAARRLRRKWKAVVREESRTDSKGVRGEKAFMGSVELGARAVSVQTWMDVYIFAREYEMYRQQCIGKRALALAHEHDSKKRRMQNIEEKLGDAAAIEKEIWKGKPAVGNTERIRKLIKYRPTMSVAVAQKAFGGLKFVPPKKKKHFKVLKETS 467
            MNEKREALQEQPEEATLHPQPCHEPAGLRESCVKTITRHFDVLTLQRYRNWVIPVDLFMQILRGCQSIAWVNLADTMLGVVKNLPCLQVPEVDEVFWKTICEATLSPTTPIAVPYSSLVHNVVRHTVFLRNYSATAEMNGGVPGDALKEEVCGQMAHMKTASFQGQACGQTQKNGDTTCLPVNKKGKITKLEGHISSGEGLTGRLHERNIRNDESLDIEGQRNGHKTSSEGGSSCSATTRMPRMQQKDGDGDHAAALRVLQELRDIPVSVQLLKDANGVCQVVNQVSKLVPSAKGDKGAGGGSVGEGQAMEEVVQAARRLRRKWKAVVREESRTDSKGVRGEKAFMGSVELGARAVSVQTWMDVYIFAREYEMYRQQCIGKRALALAHEHDSKKRRMQNIEEKLGDAAAIEKEIWKGKPAVGNTERIRKLIKYRPTMSVAVAQKAFGGLKFVPPKKKKHFKVLKETS
Sbjct:    1 MNEKREALQEQPEEATLHPQPCHEPAGLRESCVKTITRHFDVLTLQRYRNWVIPVDLFMQILRGCQSIAWVNLADTMLGVVKNLPCLQVPEVDEVFWKTICEATLSPTTPIAVPYSSLVHNVVRHTVFLRNYSATAEMNGGVPGDALKEEVCGQMAHMKTASFQGQACGQTQKNGDTTCLPVNKKGKITKLEGHISSGEGLTGRLHERNIRNDESLDIEGQRNGHKTSSEGGSSCSATTRMPRMQQKDGDGDHAAALRVLQELRDIPVSVQLLKDANGVCQVVNQVSKLVPSAKGDKGAGGGSVGEGQAMEEVVQAARRLRRKWKAVVREESRTDSKGVRGEKAFMGSVELGARAVSVQTWMDVYIFAREYEMYRQQCIGKRALALAHEHDSKKRRMQNIEEKLGDAAAIEKEIWKGKPAVGNTERIRKLIKYRPTMSVAVAQKAFGGLKFVPPKKKKHFKVLKETS 467
The following BLAST results are available for this feature:
BLAST of EWM27511.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109777|gb|EWM27511.1|0.000e+0100.00Transcription factor IIS [Nannochloropsis gaditana... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3163rna3163Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications