rna3161, rna3161 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3161
Unique Name	rna3161
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2322
Alignment location	CM002460.1:881468..883588 +

Link to JBrowse

Properties


Property Name	Value
Product	Lipase, class 3
Orig transcript id	gnl\|cribi\|Naga_100101g12.9065.mrna
Orig protein id	gnl\|cribi\|Naga_100101g12.9065
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:881468..883588 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100101g12	gene3038	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3161	rna3161-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27527.1	cds3153	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:881468..883588+
coding sequence from alignment at CM002460.1:881468..883588+

mRNA sequence

>rna3161 ID=rna3161|Name=rna3161|organism=Nannochloropsis gaditana|type=mRNA|length=2322bp
ATGGCATTGAATTCTATATTAGTGTCCACTTTGGGTGCTGTGTCGGTCAT
TCTTGTGTTAAGCGCTTTCGTCACAGGCGGCACCTTCTACAATTACATCG
CTCGCCATGAGCAGGGTATTCCGGAGATGTTTGACTCGAAAGCTAGTGAA
GTATCACCGTCATACTCGACCCTCTCTCGACTTCCCTCATTACGTGGACG
GTACGCAGTCGACAAAATGGCCGGATCCGGAAGTGCACCGAGAAGACAAC
CTGCCAAGACGGAGAATACGAGTCAAGTGCGAAGGTTTTTGGCTTTCATT
CCCTTGCTAGGCCTTAAAAATGACGATTGGGGAAGTCGAGAATCAGAGCG
CTTAGTGCTGGAGGCCTGGAATGCCTTGGCAAATCATGTGAGACTCATGA
ATGAGAGTGTAGAACTGCGGGTTGTGGGGATGGTAGAGGACGCTTCCTAC
TGTGACCCTCGCCTCTTCGGTCCTTCAGCCTCCCTCGCGTCCAGCGCTGT
CTCCTGCCTGACGCTAGGTCCCTCTTGTAATCAATCCGGGCAAAAAAGCG
CTCCGACATTGGATTGCATCTTTGAGGTGGCCACGAGAGTGGGAGACGCC
TACGGGGCAAACGTTTACATCCTTGCCAATGGTGATGTCGTGTTCACACC
CACTTTCACAGAGGCGATCGCTTTTGCCTTGAACACCTTTGGAAACGGAC
CACCCGTACGAGAGGGCGAAGAGGGCGTCGCACCATCGCCACGCCTTACA
CTCCAGCCTCCGGCGTCAGCATCAGGCGCGAGTGGTTTCCCTCCCCCTTG
CGCGGAGGCCTCACAGCACGAAGGATTTGTGCTTGTTGGGCGGCGGCTGG
ACATGAACGTGAGCATACCCAAGGTTCCCGACGATCCCCCATTGACCGCA
GAAGATCTCCTGGCAAAAGACGTGAACGTCCGCCTTCATCCCCCCACCGG
CATCGACTACTTCGCCTTCACCGCCAACCTCTTGCCGCGTTCCTTCCCTC
CCTTCTTGATCGGGCGATGGCGGTGGGACAACACCCTTCTCCTCCACTTC
TTGCTTTCGAAAGGGGCGAGTATCGACGCCACAGAAGTCGTCCACGCTTT
GCACATAGGAATGGCGCCTTTCGACTCGGCCGAGCATGCGACCCGCGCGG
GCGCCCACTACAACGACGTGCTCGCCGCCAGCACCGCGGGGTCGGCCCAT
AAATTGGGCCGGTCTGACTTCACGACTTATGTCCTCAAGGACGGGGGCAT
GCCGGAAGAGGAAGACGAGGTTGCACCGCATCATCTGGCGTTGCGGCTGG
AACGCAGGTCTCATCCCTTGATCCACGGTCAGCTGGCTGGCTTACGAGTG
GCTGCGAGAGGCTTCGCTTTTCCCAATGCAAGCCATGAGGAGCGAAACGC
ACACGTGCAGGCGGATGAAAATTCAGGAAAGACAATTTTCCTGTTGCCCG
TACCGGCCGGGGAGGTGGCCTCGGCTATGGAGTGGGCGTGTTGGGCTGGA
GACATGGGCCTGACAAACTACCTCTTCGTGGCTGCCAGCAGGAATGACTC
GTGCGCCATCGAGGCTGCGCTCGCAGTCATCAATAAAGGTCGAAAAGGCG
GTGAAGTCTTGCACATGGACCCTAGTCAGTTGACCATTGCTGGTTGGGGC
GGGAGCAAGCCCTATTTCAATCAAAAAAAATCAGGGATCGCTTCGAGAGC
CGTCCTGGACTATGGGACTGGGGCATTGATGCAGCGCCTGTTGCGGTTGG
GACTTTCTGTGGTATTGGTGCCCACACTGACCCCGTTCCCTCCACCTTCA
CGGTCGGCTTCATCCGCGTCGCCGCATCCGCATCTTCCATCTTTTTGGGG
AAAAAATGCGGACGCAAAAATGAAAGGCGACGAGGGAACGGGTAGGACAT
CACAGGAAGTCATTCAAAGCGTGATGCAGGCCTCCGACGATGCAGCGTGT
GATGTGATACTGTGGGAGGAAACGCATACGAGCGCTCCAGGGCATACAGA
CACGCTGAGCAAGCATACATATACGAAAGAATCGTCATCCAAGGAAAAGG
CTGACAAGCGGGCAAATTTTTTGTACGCTCGGGTGGAGGCATCGAGCCAA
ATCATGAAAAATTGGGATACTGTCTTCAATTGCCTGACGGAGGACGTACG
GAGTAGCAAAAGCAAAAGGGGTTGGTGCTTTGCGGAGTTGAAAACTTCTT
GCCATCATGTTGTACCGGCGGTCTCTGTTTCGAATTATTTTGAAAACTTG
TCGGCAGATCAGCGGTTGTGGAGTGCTTCCTCGTTGCAGTGTCGACAAAA
ATACAAGAACCGAGGGACTTGA

protein sequence of rna3161

>rna3161-protein ID=rna3161-protein|Name=rna3161|organism=Nannochloropsis gaditana|type=polypeptide|length=706bp
MMKTLVSCAVLLLQPFAYSFFPAARQHYPPHRDLHRREPCLSFSAFIDDS
LKASEHPSDELPPKSYFFDAPKAVRLAAFSFAAYGKPSGSRWLRLSDGTD
LGFQSDDLVRNNFKSLLLVHILQARNLPEEQGGLLEKALSGSGCDPYVVS
AVNNSWGADLAITSAKTANSNPDFFQRFFLYVEDPTTASLNLTVKDRNLL
KGDDVIGSCQVPLRLLEEKIGDDVPPAQGILEWSGILDIESAVPNTKSSG
TIEIELQLVPLDGNAVDKDDRNLDDPDIENMKSITLTPTGPKSVLEGIDW
NELGSRVGGVATGLGRYQFACFLTNEETDTQGGIWYDWKAKEIIISFRGT
QMEWKDLLTDMAIYQEGLDGPDDRRLVHAGFRRAFRSIRGGVVQALQFIA
PDLIVDGWTVDVCGHSLGGALACLMAYELDRRMPALSEGGRLHVYSFGAP
RVGNTAFCDEYDVRLKEVTFRIVNGLDIVARMPRGTGRSAVLMEYNHCGR
TVLLTETEEGQFRVWVEGESEGVCPLKEGDAFASTTDKSVSDLRAIAMKG
KGDKELEFQLPISKATFSNGTTASVQEMLRAAGNLTNLEAMLSFKPSTDI
LASFSGSPSSWPPSGPFGQLSLQTDLFQVANAVFGTALNSTAFIGKSLGL
NETFIDSELNLIKGLVYGEALAHHMEPLYYLALEKAFGAAMKMDSARKEH
WDEDQR

mRNA from alignment at CM002460.1:881468..883588+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3161 ID=rna3161|Name=rna3161|organism=Nannochloropsis gaditana|type=mRNA|length=2121bp|location=Sequence derived from alignment at CM002460.1:881468..883588+ (Nannochloropsis gaditana)
ATGATGAAGACACTCGTCTCATGTGCAGTGTTGCTATTGCAGCCGTTCGC
CtactccttttttcctgcaGCCAGGCAACATTATCCGCCCCATCGAGATC
TGCATCGGCGAGAACCATGCCTATCGTTTAGCGCCTTTATTGACGACAGT
TTGAAAGCTTCAGAACATCCATCCGACGAACTTCCCCCCAAGTCTTATTT
CTTTGATGCCCCTAAAGCTGTCCGGTTGGCAGCTTTTTCGTTTGCAGCTT
ACGGTAAGCCTTCCGGGTCCCGCTGGCTGCGCCTGTCTGATGGCACAGAT
TTGGGTTTTCAGTCCGACGACCTTGTGCGAAACAATTTTAAAAGTCTATT
ACTGGTTCATATTCTCCAAGCCCGTAACTTGCCGGAAGAACAAGGTGGAT
TGCTGGAAAAAGCCTTGTCTGGGTCTGGCTGTGACCCTTACGTTGTCTCA
GCAGTAAATAATTCTTGGGGTGCTGACCTGGCGATTACAAGTGCCAAAAC
TGCAAATTCGAATCCCGACTTTTTTCAACGCTTCTTTTTGTACGTGGAAG
ATCCGACAACGGCATCACTGAATCTTACAGTCAAAGATCGAAATCTACTG
AAGGGTGATGATGTTATCGGCTCTTGTCAAGTGCCTTTGAGGCTTCTGGA
AGAGAAGATAGGCGACGACGTACCCCCTGCACAGGGCATTTTGGAATGGT
CAGGAATCTTGGATATTGAGAGTGCTGTGCCAAATACAAAAAGTTCGGGG
ACCATTGAAATCGAGCTTCAGCTGGTACCTTTGGATGGCAATGCCGTAGA
CAAAGACGATAGAAATCTAGACGATCCGGATATAGAAAACATGAAATCAA
TCACTTTAACCCCTACAGGACCCAAAAGTGTTTTGGAAGGTATCGATTGG
AATGAGTTGGGGTCACGTGTTGGAGGAGTAGCAACAGGGTTGGGCCGCTA
CCAATTTGCGTGCTTTTTGACAAACGAGGAGACAGACACTCAGGGGGGAA
TATGGTACGACTGGAAGGCCAAGGAGATCATTATATCCTTTCGCGGGACT
CAGATGGAGTGGAAAGATCTTTTGACAGACATGGCGATTTATCAAGAAGG
TTTGGACGGGCCAGATGATCGCCGTCTAGTGCATGCTGGCTTTCGGCGTG
CATTTCGTTCCATCCGGGGGGGGGTAGTACAAGCCTTACAATTCATTGCT
CCTGATTTAATCGTTGACGGGTGGACTGTGGATGTATGCGGTCACTCTTT
GGGAGGCGCATTAGCCTGCTTGATGGCCTATGAGCTGGATCGACGAATGC
CGGCTCTATCAGAGGGAGGTCGTCTGCATGTCTATTCCTTCGGGGCCCCG
CGCGTAGGCAACACTGCCTTCTGCGACGAGTACGATGTTCGCCTGAAAGA
AGTGACGTTCCGAATTGTGAATGGTTTAGACATTGTCGCACGTATGCCGC
GAGGAACGGGACGGTCTGCGGTTTTAATGGAATACAATCATTGCGGACGC
ACGGTGTTGCTTACAGAGACAGAAGAAGGGCAATTTCGTGtctgggtgga
gggagagtcgGAAGGAGTGTGTCCACTTAAAGAGGGTGACGCATTTGCGT
CGACCACGGACAAGTCTGTCTCTGATTTGAGGGCAATAGCcatgaagggg
aaaggagacaaggagcTCGAATTTCAATTGCCTATAAGCAAGGCCACGTT
TTCGAATGGCACGACAGCCTCGGTCCAGGAGATGCTGCGGGCAGCTGGTA
ATCTCACTAATCTTGAGGCCATGCTTTCCTTTAAGCCATCTACGGATATT
TTGGCCTCCTTTTCTGGATCTCCCTcatcctggcctccctcggGACCTTT
CGGTCAGTTGAGTCTTCAAACGGACCTATTTCAAGTCGCCAACGCCGTCT
TCGGGACAGCTTTAAATTCAACCGCATTCATTGGCAAGAGTCTAGGACTT
AATGAGACGTTTATAGACAGTGAGCTGAATTTGATTAAAGGGCTAGTATA
CGGTGAGGCACTCGCCCATCACATGGAACCATTGTATTACCTTGCGCTCG
AAAAAGCTTTCGGGGCCGCGATGAAAATGGACTCTGCCAGGAAAGAGCAT
TGGGACGAAGACCAAAGGTAA

Coding sequence (CDS) from alignment at CM002460.1:881468..883588+

>rna3161 ID=rna3161|Name=rna3161|organism=Nannochloropsis gaditana|type=CDS|length=2121bp|location=Sequence derived from alignment at CM002460.1:881468..883588+ (Nannochloropsis gaditana)
ATGATGAAGACACTCGTCTCATGTGCAGTGTTGCTATTGCAGCCGTTCGC
CtactccttttttcctgcaGCCAGGCAACATTATCCGCCCCATCGAGATC
TGCATCGGCGAGAACCATGCCTATCGTTTAGCGCCTTTATTGACGACAGT
TTGAAAGCTTCAGAACATCCATCCGACGAACTTCCCCCCAAGTCTTATTT
CTTTGATGCCCCTAAAGCTGTCCGGTTGGCAGCTTTTTCGTTTGCAGCTT
ACGGTAAGCCTTCCGGGTCCCGCTGGCTGCGCCTGTCTGATGGCACAGAT
TTGGGTTTTCAGTCCGACGACCTTGTGCGAAACAATTTTAAAAGTCTATT
ACTGGTTCATATTCTCCAAGCCCGTAACTTGCCGGAAGAACAAGGTGGAT
TGCTGGAAAAAGCCTTGTCTGGGTCTGGCTGTGACCCTTACGTTGTCTCA
GCAGTAAATAATTCTTGGGGTGCTGACCTGGCGATTACAAGTGCCAAAAC
TGCAAATTCGAATCCCGACTTTTTTCAACGCTTCTTTTTGTACGTGGAAG
ATCCGACAACGGCATCACTGAATCTTACAGTCAAAGATCGAAATCTACTG
AAGGGTGATGATGTTATCGGCTCTTGTCAAGTGCCTTTGAGGCTTCTGGA
AGAGAAGATAGGCGACGACGTACCCCCTGCACAGGGCATTTTGGAATGGT
CAGGAATCTTGGATATTGAGAGTGCTGTGCCAAATACAAAAAGTTCGGGG
ACCATTGAAATCGAGCTTCAGCTGGTACCTTTGGATGGCAATGCCGTAGA
CAAAGACGATAGAAATCTAGACGATCCGGATATAGAAAACATGAAATCAA
TCACTTTAACCCCTACAGGACCCAAAAGTGTTTTGGAAGGTATCGATTGG
AATGAGTTGGGGTCACGTGTTGGAGGAGTAGCAACAGGGTTGGGCCGCTA
CCAATTTGCGTGCTTTTTGACAAACGAGGAGACAGACACTCAGGGGGGAA
TATGGTACGACTGGAAGGCCAAGGAGATCATTATATCCTTTCGCGGGACT
CAGATGGAGTGGAAAGATCTTTTGACAGACATGGCGATTTATCAAGAAGG
TTTGGACGGGCCAGATGATCGCCGTCTAGTGCATGCTGGCTTTCGGCGTG
CATTTCGTTCCATCCGGGGGGGGGTAGTACAAGCCTTACAATTCATTGCT
CCTGATTTAATCGTTGACGGGTGGACTGTGGATGTATGCGGTCACTCTTT
GGGAGGCGCATTAGCCTGCTTGATGGCCTATGAGCTGGATCGACGAATGC
CGGCTCTATCAGAGGGAGGTCGTCTGCATGTCTATTCCTTCGGGGCCCCG
CGCGTAGGCAACACTGCCTTCTGCGACGAGTACGATGTTCGCCTGAAAGA
AGTGACGTTCCGAATTGTGAATGGTTTAGACATTGTCGCACGTATGCCGC
GAGGAACGGGACGGTCTGCGGTTTTAATGGAATACAATCATTGCGGACGC
ACGGTGTTGCTTACAGAGACAGAAGAAGGGCAATTTCGTGtctgggtgga
gggagagtcgGAAGGAGTGTGTCCACTTAAAGAGGGTGACGCATTTGCGT
CGACCACGGACAAGTCTGTCTCTGATTTGAGGGCAATAGCcatgaagggg
aaaggagacaaggagcTCGAATTTCAATTGCCTATAAGCAAGGCCACGTT
TTCGAATGGCACGACAGCCTCGGTCCAGGAGATGCTGCGGGCAGCTGGTA
ATCTCACTAATCTTGAGGCCATGCTTTCCTTTAAGCCATCTACGGATATT
TTGGCCTCCTTTTCTGGATCTCCCTcatcctggcctccctcggGACCTTT
CGGTCAGTTGAGTCTTCAAACGGACCTATTTCAAGTCGCCAACGCCGTCT
TCGGGACAGCTTTAAATTCAACCGCATTCATTGGCAAGAGTCTAGGACTT
AATGAGACGTTTATAGACAGTGAGCTGAATTTGATTAAAGGGCTAGTATA
CGGTGAGGCACTCGCCCATCACATGGAACCATTGTATTACCTTGCGCTCG
AAAAAGCTTTCGGGGCCGCGATGAAAATGGACTCTGCCAGGAAAGAGCAT
TGGGACGAAGACCAAAGGTAA

Synonyms

Publications