rna316, rna316 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna316
Unique Name	rna316
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2454
Alignment location	CM002455.1:782725..785649 -

Link to JBrowse

Properties


Property Name	Value
Product	dna ligase
Orig transcript id	gnl\|cribi\|Naga_100003g181.1817.mrna
Orig protein id	gnl\|cribi\|Naga_100003g181.1817
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:782725..785649 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g181	gene305	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30300.1	cds316	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna316	rna316-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:782725..785649-
coding sequence from alignment at CM002455.1:782725..785649-

mRNA sequence

>rna316 ID=rna316|Name=rna316|organism=Nannochloropsis gaditana|type=mRNA|length=2454bp
ATGGGCGTCGGGTACCACGCTGCCAACCTCGCGGCCCAAGCACGGATTTG
GTCCAAAAAACTCTGGCTTCTATCCCTTCTAGCAGTAATCGTGCCAAATC
ATGTGAAGGGATTCGTCAGGCCAGCCGCACGCCTGACGCGAGGTATAAAT
GTTCACTTCGAGCAGCACCTGCAATTCAGCAGACCACTTCGGATGCGACA
AGAAAGGGCATCACGCATGGCGGCCGCCTCTACTGCGACACAAAGCGGCT
CTCCGTCTCTAACGGAACTACCGAATTTAGCAGAGCTAGCCGAAACGCGG
AAGACGGGATTGACGCAGCGGTTCATATTTTTCGGCGGTAAAGGTGGCGT
GGGGAAGACCAGCACTTCGACAGCAATCGCTGTACATTTGGCCGACAAAG
GGCTGAAAACCCTCATCATCAGTACAGACCCAGCACATTCATTGGGCGAC
TTGCTGGAGCAAAAAGTATCAGGCGGGGATCCCGTCCGAGTGGAGGGGTG
CGACAACCTGTGGGCCATGGAGGTGGACACGACGCGAGCTCTGGATCGTT
TCCGCGCGCTGTTCAAGGAGCTAGATGTAAGCGCATTAGCGGCTCAATTT
GGCGTTTCGGAGGAGATTTTGGCCGGCCTGGGTCTGGAGGACTTCGTGGC
CATCCTGAACAACCCCCCCCCGGGCATCGATGAGCTTATTGCATTAGCCG
ACGTGGTGCGCCTCTCGAAAGGAAAGGGAAGCACGAGCAAAGAGGGTGCT
GCCGTGAACGGTCTGACGTTCGACCGCGTGGTCATCGACACGGCGCCGAC
GGGACATACCCTGCGGCTCTTGAGTTTCCCTGACTTCTTGGACGGCTTTC
TGGGCAAGCTGGTGAAGCTCCAGCTCCGCCTCTCCAAGGTCCTCTCCTCC
CTGTCCAGTCTCTTCGGCGGGGGCTCCGTGGAATCTCAGGAGCGATTGCG
GGCAACCGACGAGCTGCTAGCCAAAGTGGAGAGGGCGAAGCTGCAGATGA
TGGAGCTGCGGGAATTGTTCCGAGACCAGGACGCGACGGAATTCTGTATC
GTCACGATCGCCACGCAGCTGGCGGTGGCTGAATCCAAACGTTTGCTCGC
GGCCCTCCGCAAAGAGAAGATCGCGGTGCGACACCTGGTGGTGAACAAGC
TCGTGCAGGACGAAGACCAGAGCCAACACATGGCTCGCATCGGCAGGGGC
CAGGCGCTTTGCCTCCAGCGTGTGGAGCGGGGTCTGGTGGCGGACCACGG
CCTCTCGACCGTGCAGGTACCTTATTTGGATGTTGAAGTGAAAGGCATCT
TTGGGCTTAAGTTCATGGCCGATGCAGCATTCGAGACAAGCCCGGGGTCG
GCCTTCGGAGACCTGTTTGAGTCGGGCGGGCCCATCGCCACCCGCTTCGT
CCTCTTCGGAGGGAAAGGCGGCGTGGGGAAGACGTCGTCGTCTGCGGCCC
TGGCCGTGAAACTCGCGGACTCTGGGTTCACCACCGCCATCGTCAGCACC
GACCCCGCGCACTCTCTGGGCGACGCCCTGGAGATGGACCTGTCGAGCGG
CCGCGTCACCGAGGTAGCGGGACTCTACGGGCCCGGGCGGCTCTTCGCCC
TCGAGGTGGACACGGAGGAGGCGGTCGAGGAGTTCAAGCAAGTGCTGCAA
GGCCTCGGAAAGGGGACGAAAGGGGCTATGAAGGGCAATGGGATAATGGA
CCAGCTCCAGGTAGGGGAGTTCGCAGACGTTTTCGAGTCGGCGCCGCCCG
GCACGGACGAGCTGGTGGCGCTGGCGCGCGTGCTGAAGTTGCTCAAGGAG
GGCACACCGGGGGAGGGGAAACGCTTCGATCGCATTATCATCGACACAGC
CCCCACTGGGCATACCCTGCGGCTTCTAAGTTTTCCTGAGTTCCTGGAAG
GCTTCCTGGAACGGGTCATTTCCATCCGAGAGCGGCTCAGGGGGGCTTCT
TCGCTCATGGACATGTTCGGAGGGCTGGCGGTAGGCGGGAAGGACAAAGG
CTTTGCTGAAGGGGATGAGGGAATAGGTGGAAGTGGCTTGGAAGCAGAAG
ATGAAGGGCTGCCCCGGGACCGTCTCCGGGAGTTCCAGCTGAAGATGATC
GAGCTGGACGACCTGCTGCACGACCCCGCCCGCGCCGAGTTCGTGGCGGT
CACCATCCCCACGGAGATGGCGTTGGCCGAGACGGAACGACTGGTAGAGG
CCTTGAAGGAGCAGGACGTGGCCATCCGCAGGGTCGTGATCAATCAAGTG
CTGGGCGAGGAGGTGTCGCAGGGCTACTGGGCGCGGTTGCGTGCCGGGCA
GCAGGTGGCCTTGGCGGACGTGGAGAGGGCGGTGGCGGCGGGAGGCGTGC
AGGTGACAGAGGTGCCTTACTTCGATACAGAAATAAAGACTGTGTACGCG
TTGCGGGTCCTGGCGGACGTCCTGACGGGGCCGGAAGCAGGGAAAGGGCC
TTGA

protein sequence of rna316

>rna316-protein ID=rna316-protein|Name=rna316|organism=Nannochloropsis gaditana|type=polypeptide|length=974bp
MMWMRSSRAWCSCRGRGRIKFAAFLPLRPLMTSPNRHNLLPHESAFPPLF
VQPTPSEALTTAENKRKSLMSMSEVQFGRVRRRGKMAEGAVKPGQHRRKK
LENLGVPDEVEQELRDLAHELEVHDALYYNQNEPCITDAEYDELARRLEA
LERAHPLLVRELASRTGYVSRGERVGSSPVFSTDASSDMGSGAGARFAPV
KHGWPMLSLDNAFSEEEVAAWATRLQRALCEEEVAEGRQTATSDDAIGEG
RSTARGGLAGGETERPVTGAGGVHVVAELKIDGVSLSLRYEDGVLVRGAT
RGNGFVGEDVTENVHSIASIPHRLPPPSTDCPLPPAVEVRGEVYLPRRVF
EDLNEARKAQGAPLLSNPRNAASGSLRQLDVALTRERRLGFFAYGIEATE
DTGVHPPSLPATQVGVLALLEAWGFEVAHPWAPCRDLQALRAFHRRLEGE
RSSLAFDIDGVVYKLNDLQARRRAGRSARAPRWAIAHKFSPLEAVTRVRA
VDVQVGRTGVLTPVAVLEPVTVGGVVITRASLHNFQDVARRDVRVGDLVA
VRRAGDVIPQVLGRANLTLAAQGADGEDACYGAEIDSRSKPISTPTRCPS
CAGPVSQEEDQVAVYCPAGLSCPAQSLERLAHFVSRGAFDIKGLGGRRLQ
ELRSWEMVETPTDLFSLASREAAKKERRARGRSSSEGSGGRAPYAENAAL
GKPGDTMALHDGSDEVLLEERAGWGEKSVTALFSAIAARRKIPLSRFIFA
LGVTHVGQTTAQAIAAHFGSVGNWWGAMQALEQGEVEEGRCGVEDRKDME
EHLNGGGVETREGEKNLPSKQVATAQDAGGMDTIEGIGPTVIASLRAFVR
DERNKRTVEALFREIEVLNEESFTERSDIEVSAGGRGPPRVDGPLVGKTV
LFTGALQGMTRSEVEAQARQMGATPVKTLSKKVDMIVVGASPGSKARKGR
DLGIEHLEEAQWLTLVDRASKGVI

mRNA from alignment at CM002455.1:782725..785649-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna316 ID=rna316|Name=rna316|organism=Nannochloropsis gaditana|type=mRNA|length=2925bp|location=Sequence derived from alignment at CM002455.1:782725..785649- (Nannochloropsis gaditana)
ATGATGTGGATGAGATCAAGCAGAGCATGGTGTTCTTGTCGCGGAAGAGG
CCGGATAAAATTTGCTGCATTCTTACCCCTCCGACCTCTCATGACAAGCC
CGAACCGGCACAACCTACTGCCACACGAGAGCGCCTTCCCACCATTGTTC
GTGCAGCCTACTCCATCAGAAGCGCTAACGACTGCAGAAAACAAGAGGAA
GTCATTGATGTCAATGTCGGAAGTGCAATTTGGGCGCGTGCGGAGACGTG
GGAAAATGGCGGAGGGCGCTGTCAAGCCTGGACAACACCGTCGGAAGAAG
TTAGAGAATCTGGGAGTACCCGATGAGGTGGAGCAAGAGCTACGGGATCT
TGCGCATGAGCTTGAAGTCCATGACGCCCTATACTACAATCAAAATGAGC
CGTGCATCACGGACGCGGAGTACGACGAGCTAGCGCGACGATTGGAGGCC
TTAGAGCGCGCCCATCCCCTGCTTGTCCGGGAGCTAGCCTCCCGGACGGG
CTACGTCTCCCGCGGAGAGCGTGTGGGATCCTCCCCTGTCTTTAGCACGG
ATGCGTCAAGCGACATGGGTTCAGGTGCTGGGGCGCGCTTTGCGCCAGTG
AAGCACGGGTGGCCTATGCTGTCGCTCGACAACGCCTTCTCCGAGGAGGA
GGTGGCGGCTTGGGCGACGCGGCTGCAAAGGGCGCTATGCGAAGAGGAGG
TGGCGGAAGGGCGGCAGACCGCTACGTCGGATGATGCGATCGGGGAAGGG
AGAAGCACTGCAAGAGGGGGTCTGGCGGGAGGAGAGACGGAGAGGCCGGT
AACAGGCGCGGGGGGAGTGCACGTGGTCGCGGAGCTCAAGATTGACGGCG
TGTCTTTGAGCTTGCGGTACGAAGATGGCGTGCTTGTTCGCGGTGCAACG
CGAGGTAACGGATTCGTCGGGGAGGATGTGACCGAGAACGTCCACTCCAT
CGCCTCCATCCCGCACCGGCTCCCCCCTCCGTCCACGGACTGTCCACTTC
CCCCGGCCGTGGAGGTTCGGGGCGAGGTCTACCTCCCTCGCCGCGTCTTC
GAGGACCTGAACGAGGCGCGTAAGGCCCAGGGGGCACCCTTGCTCTCCAA
TCCGCGCAATGCAGCCTCGGGTTCTCTCCGACAGCTTGACGTGGCCCTCA
CTCGGGAGCGGCGCCTGGGCTTCTTCGCCTACGGCATCGAGGCCACCGAA
GACACTGGGGTCCATCCGCCTTCCCTTCCGGCCACTCAGGTCGGTGTCCT
CGCCCTCCTCGAGGCCTGGGGCTTTGAAGTCGCTCACCCGTGGGCCCCCT
GTCGGGACCTGCAAGCACTGCGGGCTTTCCACCGGCGTCTGGAGGGAGAG
CGCTCGTCGCTGGCCTTCGACATCGACGGCGTCGTCTACAAGCTCAACGA
TCTGCAGGCGCGGAGGCGGGCGGGTCGGAGCGCACGCGCGCCTCGATGGG
CCATCGCCCACAAGTTCTCACCCCTGGAGGCAGTGACCCGGGTGCGCGCC
GTGGACGTGCAGGTGGGGCGCACGGGGGTGCTAACGCCGGTGGCCGTCCT
GGAGCCAGTGACGGTGGGCGGCGTGGTCATCACACGAGCCAGTCTCCACA
ATTTCCAGGACGTGGCCAGGCGCGACGTGCGAGTGGGGGACTTGGTGGCC
GTCCGCAGGGCTGGGGACGTGATACCGCAGGTACTGGGTCGTGCCAACCT
GACGCTGGCGGCCCAGGGCGCGGACGGTGAGGATGCTTGTTACGGGGCTG
AAATTGATTCCCGCTCCAAGCCGATCAGCACCCCCACTCGCTGTCCGTCG
TGCGCGGGGCCCGTGAGCCAGGAGGAGGACCAGGTGGCAGTTTATTGCCC
TGCCGGCTTGAGCTGCCCCGCGCAGTCCTTGGAGCGGCTGGCGCATTTCG
TCTCTCGGGGAGCTTTCGACATCAAAGGGCTGGGAGGGCGGAGGCTGCAG
GAGCTAAGGAGCTGGGAGATGGTGGAGACACCGACGGACCTCTTCAGTCT
GGCTAGTCGGGAGGCGGCCAAGAAAGAAAGAAGAGCGAGGGGGAGAAGCT
CCTCGGAGGGGTCCGGTGGAAGGGCACCTTACGCTGAGAACGCTGCGTTG
GGGAAGCCAGGGGACACAATGGCGTTGCACGACGGGTCAGATGAGGTCTT
ATTGGAGGAGCGGGCAGGGTGGGGAGAGAAGTCTGTCACCGCGCTCTTCT
CTGCCATCGCCGCGCGACGGAAAATACCCTTGAGTCGATTTATCTTCGCG
CTAGGAGTGACCCATGTAGGCCAAACCACAGCACAAGCTATAGCTGCTCA
CTTCGGGAGTGTCGGCAATTGGTGGGGGGCGATGCAGGCGCTGGAGCAAG
GGGAAGTGGAGGAAGGGAGATGCGGAGTGGAGGACAGGAAGGATATGGAA
GAGCACTTGAATGGGGGGGGTGTGGAGACTAGGGAAGGTGAGAAGAACTT
GCCCAGTAAACAGGTGGCAACTGCACAGGACGCGGGTGGGATGGACACTA
TCGAGGGCATTGGGCCCACGGTGATCGCATCCCTGCGAGCCTTTGTGAGG
GACGAGAGGAACAAACGGACGGTGGAGGCTCTCTTTCGAGAAATCGAAGT
GCTCAATGAGGAGTCGTTTACAGAAAGATCTGACATAGAAGTGAGCGCGG
GCGGACGAGGCCCCCCGCGCGTGGACGGCCCATTAGTGGGAAAGACAGTT
CTCTTCACAGGCGCGTTACAGGGCATGACCCGGTCGGAGGTCGAAGCTCA
GGCACGACAAATGGGGGCAACGCCTGTTAAGACGCTGAGTAAGAAGGTAG
ATATGATTGTGGTGGGTGCAAGTCCTGGAAGTAAGGCCCGAAAGGGCAGG
GATCTGGGAATCGAGCACCTGGAGGAGGCGCAGTGGCTGACCCTCGTTGA
TCGAGCTAGCAAAGGGGTCATCTAG

Coding sequence (CDS) from alignment at CM002455.1:782725..785649-

>rna316 ID=rna316|Name=rna316|organism=Nannochloropsis gaditana|type=CDS|length=2925bp|location=Sequence derived from alignment at CM002455.1:782725..785649- (Nannochloropsis gaditana)
ATGATGTGGATGAGATCAAGCAGAGCATGGTGTTCTTGTCGCGGAAGAGG
CCGGATAAAATTTGCTGCATTCTTACCCCTCCGACCTCTCATGACAAGCC
CGAACCGGCACAACCTACTGCCACACGAGAGCGCCTTCCCACCATTGTTC
GTGCAGCCTACTCCATCAGAAGCGCTAACGACTGCAGAAAACAAGAGGAA
GTCATTGATGTCAATGTCGGAAGTGCAATTTGGGCGCGTGCGGAGACGTG
GGAAAATGGCGGAGGGCGCTGTCAAGCCTGGACAACACCGTCGGAAGAAG
TTAGAGAATCTGGGAGTACCCGATGAGGTGGAGCAAGAGCTACGGGATCT
TGCGCATGAGCTTGAAGTCCATGACGCCCTATACTACAATCAAAATGAGC
CGTGCATCACGGACGCGGAGTACGACGAGCTAGCGCGACGATTGGAGGCC
TTAGAGCGCGCCCATCCCCTGCTTGTCCGGGAGCTAGCCTCCCGGACGGG
CTACGTCTCCCGCGGAGAGCGTGTGGGATCCTCCCCTGTCTTTAGCACGG
ATGCGTCAAGCGACATGGGTTCAGGTGCTGGGGCGCGCTTTGCGCCAGTG
AAGCACGGGTGGCCTATGCTGTCGCTCGACAACGCCTTCTCCGAGGAGGA
GGTGGCGGCTTGGGCGACGCGGCTGCAAAGGGCGCTATGCGAAGAGGAGG
TGGCGGAAGGGCGGCAGACCGCTACGTCGGATGATGCGATCGGGGAAGGG
AGAAGCACTGCAAGAGGGGGTCTGGCGGGAGGAGAGACGGAGAGGCCGGT
AACAGGCGCGGGGGGAGTGCACGTGGTCGCGGAGCTCAAGATTGACGGCG
TGTCTTTGAGCTTGCGGTACGAAGATGGCGTGCTTGTTCGCGGTGCAACG
CGAGGTAACGGATTCGTCGGGGAGGATGTGACCGAGAACGTCCACTCCAT
CGCCTCCATCCCGCACCGGCTCCCCCCTCCGTCCACGGACTGTCCACTTC
CCCCGGCCGTGGAGGTTCGGGGCGAGGTCTACCTCCCTCGCCGCGTCTTC
GAGGACCTGAACGAGGCGCGTAAGGCCCAGGGGGCACCCTTGCTCTCCAA
TCCGCGCAATGCAGCCTCGGGTTCTCTCCGACAGCTTGACGTGGCCCTCA
CTCGGGAGCGGCGCCTGGGCTTCTTCGCCTACGGCATCGAGGCCACCGAA
GACACTGGGGTCCATCCGCCTTCCCTTCCGGCCACTCAGGTCGGTGTCCT
CGCCCTCCTCGAGGCCTGGGGCTTTGAAGTCGCTCACCCGTGGGCCCCCT
GTCGGGACCTGCAAGCACTGCGGGCTTTCCACCGGCGTCTGGAGGGAGAG
CGCTCGTCGCTGGCCTTCGACATCGACGGCGTCGTCTACAAGCTCAACGA
TCTGCAGGCGCGGAGGCGGGCGGGTCGGAGCGCACGCGCGCCTCGATGGG
CCATCGCCCACAAGTTCTCACCCCTGGAGGCAGTGACCCGGGTGCGCGCC
GTGGACGTGCAGGTGGGGCGCACGGGGGTGCTAACGCCGGTGGCCGTCCT
GGAGCCAGTGACGGTGGGCGGCGTGGTCATCACACGAGCCAGTCTCCACA
ATTTCCAGGACGTGGCCAGGCGCGACGTGCGAGTGGGGGACTTGGTGGCC
GTCCGCAGGGCTGGGGACGTGATACCGCAGGTACTGGGTCGTGCCAACCT
GACGCTGGCGGCCCAGGGCGCGGACGGTGAGGATGCTTGTTACGGGGCTG
AAATTGATTCCCGCTCCAAGCCGATCAGCACCCCCACTCGCTGTCCGTCG
TGCGCGGGGCCCGTGAGCCAGGAGGAGGACCAGGTGGCAGTTTATTGCCC
TGCCGGCTTGAGCTGCCCCGCGCAGTCCTTGGAGCGGCTGGCGCATTTCG
TCTCTCGGGGAGCTTTCGACATCAAAGGGCTGGGAGGGCGGAGGCTGCAG
GAGCTAAGGAGCTGGGAGATGGTGGAGACACCGACGGACCTCTTCAGTCT
GGCTAGTCGGGAGGCGGCCAAGAAAGAAAGAAGAGCGAGGGGGAGAAGCT
CCTCGGAGGGGTCCGGTGGAAGGGCACCTTACGCTGAGAACGCTGCGTTG
GGGAAGCCAGGGGACACAATGGCGTTGCACGACGGGTCAGATGAGGTCTT
ATTGGAGGAGCGGGCAGGGTGGGGAGAGAAGTCTGTCACCGCGCTCTTCT
CTGCCATCGCCGCGCGACGGAAAATACCCTTGAGTCGATTTATCTTCGCG
CTAGGAGTGACCCATGTAGGCCAAACCACAGCACAAGCTATAGCTGCTCA
CTTCGGGAGTGTCGGCAATTGGTGGGGGGCGATGCAGGCGCTGGAGCAAG
GGGAAGTGGAGGAAGGGAGATGCGGAGTGGAGGACAGGAAGGATATGGAA
GAGCACTTGAATGGGGGGGGTGTGGAGACTAGGGAAGGTGAGAAGAACTT
GCCCAGTAAACAGGTGGCAACTGCACAGGACGCGGGTGGGATGGACACTA
TCGAGGGCATTGGGCCCACGGTGATCGCATCCCTGCGAGCCTTTGTGAGG
GACGAGAGGAACAAACGGACGGTGGAGGCTCTCTTTCGAGAAATCGAAGT
GCTCAATGAGGAGTCGTTTACAGAAAGATCTGACATAGAAGTGAGCGCGG
GCGGACGAGGCCCCCCGCGCGTGGACGGCCCATTAGTGGGAAAGACAGTT
CTCTTCACAGGCGCGTTACAGGGCATGACCCGGTCGGAGGTCGAAGCTCA
GGCACGACAAATGGGGGCAACGCCTGTTAAGACGCTGAGTAAGAAGGTAG
ATATGATTGTGGTGGGTGCAAGTCCTGGAAGTAAGGCCCGAAAGGGCAGG
GATCTGGGAATCGAGCACCTGGAGGAGGCGCAGTGGCTGACCCTCGTTGA
TCGAGCTAGCAAAGGGGTCATCTAG

Synonyms

Publications