rna3157, rna3157 (mRNA) Nannochloropsis gaditana

Overview
Namerna3157
Unique Namerna3157
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1646
Alignment locationCM002460.1:867209..868930 -

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Properties
Property NameValue
ProductZinc finger, CCCH-type
Orig transcript idgnl|cribi|Naga_100101g16.9051.mrna
Orig protein idgnl|cribi|Naga_100101g16.9051
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:867209..868930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100101g16gene3034Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27513.1cds3149Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3157rna3157-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3157 ID=rna3157|Name=rna3157|organism=Nannochloropsis gaditana|type=mRNA|length=1646bp
GGGTATGAAACATCTATACCCTCAGGTGGCAGACTCTTCATGCTAAACTT
CGATCTCATCAAGCAATTCAACGGGCTTGAGGGTGCTATACGCGCCGATT
TCTACAGACGAAACGACAGGCGTGCGTTCTCCGGGTCGCCTTCCTTGTGC
TCTTTGTGCCATCCTCATTTCTTGTTATGCTTCCACCATATCAGAAGACG
TCTACCCCTACGGCAAGTTAATCGTTTCCAGATCGGTAGTGATATTTAAC
TTTTATACACAGGCGTGTGGAAGTGTCAATGGGATTCGCCAGGTCCTTCA
TCGGCAAGCGGCATGTAAAGACTCTTATGACCTCGGTGGGCGGAAGCTTA
GCGATACTCCTTTCTACTGACCGCGAGGACAGAAAGAGATTCGCACAAGC
CCAAGCCCCTGGTATGGCAAGAGATCTTGATAAATGGTCTCAAGTGGGTC
TACCAGGCGGCGAAACCACGTACATGTTCCGTGAAAACTTCGTCGTATGC
TACGATGCCCGCACCCGGAACCCAAGATGGGTCATGGAGCGGATCACTAG
AGATACCTGCAGAGGCGAAGCAGACCGACGTGTGGTTAGCTTTTATGAAG
AAGAAAGCATAGACCCGAGTTTTCGCAGCAAAAACAGCGACTACCTCAAT
TCGGGTTACGATCGGGGGCATATGGCGCCTGCAGCCAATAATCGAAGCTC
GGTCAAAACAATGGAAGAGACGTTCACGCTGGCCAATGTCTCGCCGCAGG
TGGGGGGAGGTTTCAACCGAGACTATTGGGCGAGGGTTGAAAAGTTCACG
CGGGACTTGACCAAGCGCTGCCAAAGCGTGTACCTCGTGTCGGGACCCTT
GTTTCTGCCCCGACAAAAGCAGGCGGGTGACGCGCCTTTTACAAGCAACC
CTACCTCCAAGGCCCGATTCATCATGTCATACGAGCTCCTGGGTGACCCT
CCTGGACTGGTGGCCGTGCCAACGCACTTTTTCAAATGCGTCTTGGCGGA
AGTGGAGGGCCGATACCTGGTCGCGGCCTTCGTCTTGCCCAACGCTCCCA
TCCCGCCGGAGGTGCCCTTGACACGCTTCCTGGTCCCTCTCGAGAACTTG
GAGCAAGCGGCAGGGGTGCGTTTCTTCGCCCAAGCGCTTTCCCAGGAGGA
TAAGGAGCGACTGGACGGACGCGTGCAACTGCTGCGGGGTACCTTGGGAG
GGGAGGAGGGAGGGATAGCAGGACTCTTGGCCGCCCAAGCCCCCTCCACG
GCCCTTGTGACGCGGGAGGGCTATGGACACGACTCGGGGCGATGGGGAAA
AGGGAGAAATAAAGGTGGGCTCCGGCTCAATTTGGCGGGGCCCGAGCATC
TCTGCGAAGCATTGGCTTGTCAGCTTCCGCCCGAGAGGTTTTGGGAGCTT
ACCGATGGCAGGGCCGGGGGGGGAAATGGGGGGGGACGGCGGAAACGAGG
GGGTGACACTACGGAGTCTTCGAATTCGCTGACACCCTGGTGAATATACG
AGAGGCCTTGCATACGACGTTCTAGGTCAAGTCGATGGCTCGGCGGAGTT
GTTTGGGTGGTTGTTAGCACAGGCGCTCTCGGCTCGCGTGCTGAAAGCAT
CATTATCGCAGGTAGCGGACCCTTCCGAGCAAATAGAGTTGTTACA
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protein sequence of rna3157

>rna3157-protein ID=rna3157-protein|Name=rna3157|organism=Nannochloropsis gaditana|type=polypeptide|length=505bp
MGVFPRCKIYAEMEPFVVVTSPPLEASIAPSLSSSTVPRVPPCDVKFIVR
GRVCSRRPFAKCMLFFDLVDVSTTNGTRGDQIIRLECLLRSEGLAKLQKA
EAKRLMYDVSMGDILEVEGCLDTSREFLVLEARALRVIESWKALHKHNPR
LGFALEWPTETPNVVSNGEHTLSVYTQDGCVLVNKEGSEEVIESLLEKVC
KYWVATQGRCYSANGCPNYHPPLERHAQYYAAWLAKRRRERARASHLEGD
GHSPEDKSKKAFRAILFADWLVKTYGRERLAAGSGVVDVAGGKGDVSCRL
WGKYQIRCTIVDPRETQYRKKVRRQLLRQGRGLEGIERVQCTMPTDFGRT
DDTEGEGGMASLQGEGLRERQGPTTESQAERLWDILRRCSMVVGMHPDQA
TDVCFDAAFAFKKPVACLPCCVFAREFPHRRRPRRGGGGDGACPGQGEEV
ETYEHLVEYLLAKPVPWAQGQSKREFLPFLGRNQVVYWLPPGLSDGVERE
ERWRE
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mRNA from alignment at CM002460.1:867209..868930-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3157 ID=rna3157|Name=rna3157|organism=Nannochloropsis gaditana|type=mRNA|length=1722bp|location=Sequence derived from alignment at CM002460.1:867209..868930- (Nannochloropsis gaditana)
CGTACCTTTGAAAGGCTTCGTGGCAATGCATCCCACAGAAGTGAGGAGAT
GTATTCAAATTATATTTTGTCTCAGCAAGCAAAGCACCATCGTCATAATC
GAAACAGGAACGCCACCAGCCTGTGAGCATGGGTGTTTTTCCTCGTTGCA
AAATTTACGCGGAGATGGAGCCTTTTGTAGTGGTAACCTCCCCACCTCTG
GAGGCCTCAATAGCGCCGTCGTTAAGCTCTTCCACCGTGCCAAGAGTCCC
ACCATGCGACGTGAAATTCATTGTAAGGGGTCGTGTATGCTCTCGTCGAC
CTTTTGCAAAGTGTATGCTTTTTTTTGATTTGGTGGACGTCTCGACTACT
AACGGAACGCGCGGTGACCAGATCATTCGCCTTGAGTGCCTCCTACGCTC
TGAGGGCCTCGCGAAGCTTCAAAAGGCAGAGGCTAAAAGACTGATGTACG
ACGTAAGCATGGGTGATATTCTAGAGGTTGAGGGGTGTCTGGATACGAGC
CGTGAATTTTTGGTCTTGGAGGCGCGTGCACTCCGGGTGATCGAGTCCTG
GAAAGCCCTCCACAAACATAATCCTCGCTTGGGCTTCGCCTTGGAATGGC
CGACTGAGACACCCAATGTTGTCTCGAACGGAGAGCATACACTGTCCGTT
TATACTCAGGACGGCTGTGTTCTTGTCAACAAGGAGGGCAGTGAGGAAGT
GATAGAGTCGCTGTTAGAGAAGGTCTGCAAGTATTGGGTCGCTACACAAG
GACGGTGCTACAGCGCCAACGGGTGCCCAAACTACCATCCCCCCTTGGAA
CGACACGCGCAGTACTATGCAGCTTGGCTGGCCAAGCGCCGTCGGGAGCG
GGCGCGAGCCTCCCACCTAGAGGGGGACGGCCACTCGCCAGAAGACAAGT
CCAAAAAAGCTTTTCGCGCCATTTTATTTGCGGACTGGCTGGTGAAGACC
TATGGCCGAGAAAGGCTGGCAGCAGGGAGCGGGGTGGTGGACGTGGCGGG
GGGGAAAGGCGATGTCTCTTGTCGACTTTGGGGGAAATACCAAATCCGAT
GCACCATTGTGGACCCGCGGGAGACCCAGTATAGGAAAAAGGTGAGAAGG
CAGTTGCTGCGACAGGGAAGAGGTCTCGAAGGGATCGAGCGCGTCCAGTG
CACCATGCCCACGGACTTTGGTAGGACGGACGATACGGAGGGAGAGGGCG
GCATGGCGTCTTTGCAGGGGGAGGGCCTGCGCGAGAGACAGGGCCCCACT
ACCGAAAGTCAGGCTGAGCGGTTGTGGGACATCCTGAGGCGATGCTCGAT
GGTGGTGGGCATGCACCCGGACCAGGCCACGGACGTGTGCTTTGACGCCG
CCTTTGCGTTCAAGAAACCGGTGGCCTGCCTTCCGTGTTGCGTCTTTGCC
CGGGAATTCCCGCACCGCCGACGGCCTCGCCGGGGAGGAGGGGGTGATGG
GGCCTGTCCGGGACAAGGGGAGGAAGTGGAGACCTACGAGCACCTGGTAG
AGTACCTGTTGGCGAAGCCGGTGCCTTGGGCGCAGGGGCAGTCCAAACGA
GAGTTTTTGCCATTCCTGGGTCGGAACCAAGTGGTGTATTGGCTTCCCCC
TGGCCTTTCCGACGGGGTGGAGCGGGAGGAAAGGTGGCGAGAATAGGGAA
AAATAACATGTCACAAAGCAAGTACGTCTAAACTTTGGCATTTTAAAGGA
ATGAAACGGACTGTAACAACTC
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Coding sequence (CDS) from alignment at CM002460.1:867209..868930-

>rna3157 ID=rna3157|Name=rna3157|organism=Nannochloropsis gaditana|type=CDS|length=1518bp|location=Sequence derived from alignment at CM002460.1:867209..868930- (Nannochloropsis gaditana)
ATGGGTGTTTTTCCTCGTTGCAAAATTTACGCGGAGATGGAGCCTTTTGT
AGTGGTAACCTCCCCACCTCTGGAGGCCTCAATAGCGCCGTCGTTAAGCT
CTTCCACCGTGCCAAGAGTCCCACCATGCGACGTGAAATTCATTGTAAGG
GGTCGTGTATGCTCTCGTCGACCTTTTGCAAAGTGTATGCTTTTTTTTGA
TTTGGTGGACGTCTCGACTACTAACGGAACGCGCGGTGACCAGATCATTC
GCCTTGAGTGCCTCCTACGCTCTGAGGGCCTCGCGAAGCTTCAAAAGGCA
GAGGCTAAAAGACTGATGTACGACGTAAGCATGGGTGATATTCTAGAGGT
TGAGGGGTGTCTGGATACGAGCCGTGAATTTTTGGTCTTGGAGGCGCGTG
CACTCCGGGTGATCGAGTCCTGGAAAGCCCTCCACAAACATAATCCTCGC
TTGGGCTTCGCCTTGGAATGGCCGACTGAGACACCCAATGTTGTCTCGAA
CGGAGAGCATACACTGTCCGTTTATACTCAGGACGGCTGTGTTCTTGTCA
ACAAGGAGGGCAGTGAGGAAGTGATAGAGTCGCTGTTAGAGAAGGTCTGC
AAGTATTGGGTCGCTACACAAGGACGGTGCTACAGCGCCAACGGGTGCCC
AAACTACCATCCCCCCTTGGAACGACACGCGCAGTACTATGCAGCTTGGC
TGGCCAAGCGCCGTCGGGAGCGGGCGCGAGCCTCCCACCTAGAGGGGGAC
GGCCACTCGCCAGAAGACAAGTCCAAAAAAGCTTTTCGCGCCATTTTATT
TGCGGACTGGCTGGTGAAGACCTATGGCCGAGAAAGGCTGGCAGCAGGGA
GCGGGGTGGTGGACGTGGCGGGGGGGAAAGGCGATGTCTCTTGTCGACTT
TGGGGGAAATACCAAATCCGATGCACCATTGTGGACCCGCGGGAGACCCA
GTATAGGAAAAAGGTGAGAAGGCAGTTGCTGCGACAGGGAAGAGGTCTCG
AAGGGATCGAGCGCGTCCAGTGCACCATGCCCACGGACTTTGGTAGGACG
GACGATACGGAGGGAGAGGGCGGCATGGCGTCTTTGCAGGGGGAGGGCCT
GCGCGAGAGACAGGGCCCCACTACCGAAAGTCAGGCTGAGCGGTTGTGGG
ACATCCTGAGGCGATGCTCGATGGTGGTGGGCATGCACCCGGACCAGGCC
ACGGACGTGTGCTTTGACGCCGCCTTTGCGTTCAAGAAACCGGTGGCCTG
CCTTCCGTGTTGCGTCTTTGCCCGGGAATTCCCGCACCGCCGACGGCCTC
GCCGGGGAGGAGGGGGTGATGGGGCCTGTCCGGGACAAGGGGAGGAAGTG
GAGACCTACGAGCACCTGGTAGAGTACCTGTTGGCGAAGCCGGTGCCTTG
GGCGCAGGGGCAGTCCAAACGAGAGTTTTTGCCATTCCTGGGTCGGAACC
AAGTGGTGTATTGGCTTCCCCCTGGCCTTTCCGACGGGGTGGAGCGGGAG
GAAAGGTGGCGAGAATAG
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Synonyms
Publications