rna3156, rna3156 (mRNA) Nannochloropsis gaditana

Overview
Namerna3156
Unique Namerna3156
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1669
Alignment locationCM002460.1:865574..867219 +

Link to JBrowse

Properties
Property NameValue
Productdna rna non-specific nuclease
Orig transcript idgnl|cribi|Naga_100101g17.9061.mrna
Orig protein idgnl|cribi|Naga_100101g17.9061
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:865574..867219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100101g17gene3033Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3156rna3156-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27523.1cds3148Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3156 ID=rna3156|Name=rna3156|organism=Nannochloropsis gaditana|type=mRNA|length=1669bp
TTTATTTCCACTGACAACAGCTCATGTCGCGGACAAGTCCCTCCTTGCCC
GATTCCTTGCCTGCCAGCCATGTCCGCCGTGAACCCACATCAACATCCTA
CGAAGGTCGCTCACCCCAGCTACCCCTCGCGGACGCGTCCCGTGCAGAGG
GCCTTGACATTGAAGACGTCCTTTACTCGGCCAACTCCTTCTGGGCGGTG
CTTAAGCCTGTCGCGTTGACCATGTTTCTGGCAAGCTTGGTTGTTGTGAA
TGTGGCGTTTGCCACCGAGGATCAGGGAGTAAGCGTATACGCCATCGACG
ACGGTGACGCGGATGGCAACGGCGGAGACAGCAATTCGGTCAAGCTAGGC
AAGTCTTTGGTGAATGCCCTCACCATAGTTGGAGTCATCTGCGGCGCCAC
GTTCGTGGTAGTCCTTTTGTACAAGTTTCGATGCATGAAATGTTTGTTTG
GGTATATGGCTCTTAGCAGTACTATGTTGTTGGGCCTAATGGGCGGGTTG
CTGTGGTACACTGCTTTAATAAGGTGGGACCTGCCCTGCGACTACTTCAC
GTTTGTGATAGTTCTCTACAACTTCGCATTTGTCGGCGTGGTTGCCATCT
TCTACCAGAAAGGGATCCCAACCTGGGTCACCCAAGGTTACTTGGTCATG
ATCAGCGTCATCATGGCGTGGCAGCTATCGCGCTTCGAGGAATGGACAGG
ATGGGCCCTCCTGGTCGTCTTGGCGCTCTACGATCTATGCGCGGTCCTCA
CGCCCTGCGGACCGCTTCGGTACCTGGTGGGGCTCATGCAAGAGTACAAT
GAGCCCATGCCAGGGTTACTGTACGAGGCCGAGCTGCCCGGACATGCTCG
GCACCACCATCGAATACCCCCCTCGACCGCCTTGCGCGGAAGCGAAAGGG
CAACGGGCGCACTGGCAAGTGCAGGGAGTTTGGATGGAGGGTGCGAAGGG
GATGACGTGCGTTTGCAGGCCCCGGTTGGAGATGATGGTGCCTTCTCGCC
TGCTATGGCCTTGGGTAGTCAGGCCCACACTGTGCACAGCACCAGCCCTC
CTAGCCCTCTCGACCCTTTGCTGGACGGGACTCAGAGTAGTCCTGGAGGT
ACTCACCTCGGTCAGCACCACCCTCCTCACCCGTCCCGCAGCCTCCGTCG
GGTTTCTCGGTCACAGGGAGGGGAAACCCTCCTGGAGGATGGGATGGGGA
GCCCCGTGGAAGGTGGGAATGAGCATGGGGGCGAGTCTGAAAGGGGAGAA
AGGGGAGAAAGTGGTAGAGGCCACGGTCCATCGGAAGGTTTATCCTCCTC
TTCTCATCACCAGGGAGGGACACCGGAGCAAGAGCGATCCATCAAATTGG
GCTTGGGAGATTTCGTTTTCTATTCGGTGCTGGTCGGCAAGGCTGCTTTG
TACGGTTTTGCCACCTGTGCGGCATGCTTTCTTGTAATAATCGCGGGTCT
AGGAGCCACGCTTGTCCTCCTGAGTGTATTCCGTAAAGCTTTGCCTGCTC
TACCCATCTCTATAGGCTTGGGTGTACTTTTCTATCTGCTCACTCGAGTT
GCCATTATTCCTTACATTGATGCCTTGGTCAGCACGCCCATCTACGTCTA
AATCTGGCAAATACTATGAAGGACTTGCGCCTAGATAATAACAAAGTATC
AATATCGGAAAATTGTACA
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protein sequence of rna3156

>rna3156-protein ID=rna3156-protein|Name=rna3156|organism=Nannochloropsis gaditana|type=polypeptide|length=404bp
MGFARSFIGKRHVKTLMTSVGGSLAILLSTDREDRKRFAQAQAPGMARDL
DKWSQVGLPGGETTYMFRENFVVCYDARTRNPRWVMERITRDTCRGEADR
RVVSFYEEESIDPSFRSKNSDYLNSGYDRGHMAPAANNRSSVKTMEETFT
LANVSPQVGGGFNRDYWARVEKFTRDLTKRCQSVYLVSGPLFLPRQKQAG
DAPFTSNPTSKARFIMSYELLGDPPGLVAVPTHFFKCVLAEVEGRYLVAA
FVLPNAPIPPEVPLTRFLVPLENLEQAAGVRFFAQALSQEDKERLDGRVQ
LLRGTLGGEEGGIAGLLAAQAPSTALVTREGYGHDSGRWGKGRNKGGLRL
NLAGPEHLCEALACQLPPERFWELTDGRAGGGNGGGRRKRGGDTTESSNS
LTPW
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mRNA from alignment at CM002460.1:865574..867219+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3156 ID=rna3156|Name=rna3156|organism=Nannochloropsis gaditana|type=mRNA|length=1646bp|location=Sequence derived from alignment at CM002460.1:865574..867219+ (Nannochloropsis gaditana)
GGGTATGAAACATCTATACCCTCAGGTGGCAGACTCTTCATGCTAAACTT
CGATCTCATCAAGCAATTCAACGGGCTTGAGGGTGCTATACGCGCCGATT
TCTACAGACGAAACGACAGGCGTGCGTTCTCCGGGTCGCCTTCCTTGTGC
TCTTTGTGCCATCCTCATTTCTTGTTATGCTTCCACCATATCAGAAGACG
TCTACCCCTACGGCAAGTTAATCGTTTCCAGATCGGTAGTGATATTTAAC
TTTTATACACAGGCGTGTGGAAGTGTCAATGGGATTCGCCAGGTCCTTCA
TCGGCAAGCGGCATGTAAAGACTCTTATGACCTCGGTGGGCGGAAGCTTA
GCGATACTCCTTTCTACTGACCGCGAGGACAGAAAGAGATTCGCACAAGC
CCAAGCCCCTGGTATGGCAAGAGATCTTGATAAATGGTCTCAAGTGGGTC
TACCAGGCGGCGAAACCACGTACATGTTCCGTGAAAACTTCGTCGTATGC
TACGATGCCCGCACCCGGAACCCAAGATGGGTCATGGAGCGGATCACTAG
AGATACCTGCAGAGGCGAAGCAGACCGACGTGTGGTTAGCTTttatgaag
aagaaagcataGACCCGAGTTTTCGCAGCAAAAACAGCGACTACCTCAAT
TCGGGTTACGATCGGGGGCATATGGCGCCTGCAGCCAATAATCGAAGCTC
GGTCAAAACAATGGAAGAGACGTTCACGCTGGCCAATGTCTCGCCgcagg
tggggggaggtttcAACCGAGACTATTGGGCGAGGGTTGAAAAGTTCACG
CGGGACTTGACCAAGCGCTGCCAAAGCGTGTACCTCGTGTCGGGACCCTT
GTTTCTGCCCCGACAAAAGCAGGCGGGTGACGCGCCTTTTACAAGCAACC
CTACCTCCAAGGCCCGATTCATCATGTCATACGAGCTCCTGGGTGACCCT
CCTGGACTGGTGGCCGTGCCAACGCACTTTTTCAAATGCGTCTTGGCGGA
AGTGGAGGGCCGATACCTGGTCGCGGCCTTCGTCTTGCCCAACGCTCCCA
TCCCGCCGGAGGTGCCCTTGACACGCTTCCTGGTCCCTCTCGAGAACTTG
GAGCAAGCGGCAGGGGTGCGTTTCTTCGCCCAAGCGCTTTCCCAGGAGGA
TAAGGAGCGACTGGACGGACGCGTGCAACTGCTGCGGGGTAccttgggag
gggaggagggagggatagcAGGACTCTTGGCCGCCCAagccccctccacg
gccctTGTGACGCGGGAGGGCTATGGACACGACTCGGGGcgatggggaaa
agggagaaataAAGGTGGGCTCCGGCTCAATTTGGCGGGGCCCGAGCATC
TCTGCGAAGCATTGGCTTGTCAGCTTCCGCCCGAGAGGTTTTGGGAGCTT
ACCGATGgcagggccggggggggaaatggggggggacggcggaAACGAGG
GGGTGACACTACGGAGTCTTCGAATTCGCTGACACCCTGGTGAATATACG
AGAGGCCTTGCATACGACGTTCTAGGTCAAGTCGATGGCTCGGCGGAGTT
GTTTGGGTGGTTGTTAGCACAGGCGCTCTCGGCTCGCGTGCTGAAAGCAT
CATTATCGCAGGTAGCGGACCCTTCCGAGCAAATAGAGTTGTTACA
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Coding sequence (CDS) from alignment at CM002460.1:865574..867219+

>rna3156 ID=rna3156|Name=rna3156|organism=Nannochloropsis gaditana|type=CDS|length=1215bp|location=Sequence derived from alignment at CM002460.1:865574..867219+ (Nannochloropsis gaditana)
ATGGGATTCGCCAGGTCCTTCATCGGCAAGCGGCATGTAAAGACTCTTAT
GACCTCGGTGGGCGGAAGCTTAGCGATACTCCTTTCTACTGACCGCGAGG
ACAGAAAGAGATTCGCACAAGCCCAAGCCCCTGGTATGGCAAGAGATCTT
GATAAATGGTCTCAAGTGGGTCTACCAGGCGGCGAAACCACGTACATGTT
CCGTGAAAACTTCGTCGTATGCTACGATGCCCGCACCCGGAACCCAAGAT
GGGTCATGGAGCGGATCACTAGAGATACCTGCAGAGGCGAAGCAGACCGA
CGTGTGGTTAGCTTttatgaagaagaaagcataGACCCGAGTTTTCGCAG
CAAAAACAGCGACTACCTCAATTCGGGTTACGATCGGGGGCATATGGCGC
CTGCAGCCAATAATCGAAGCTCGGTCAAAACAATGGAAGAGACGTTCACG
CTGGCCAATGTCTCGCCgcaggtggggggaggtttcAACCGAGACTATTG
GGCGAGGGTTGAAAAGTTCACGCGGGACTTGACCAAGCGCTGCCAAAGCG
TGTACCTCGTGTCGGGACCCTTGTTTCTGCCCCGACAAAAGCAGGCGGGT
GACGCGCCTTTTACAAGCAACCCTACCTCCAAGGCCCGATTCATCATGTC
ATACGAGCTCCTGGGTGACCCTCCTGGACTGGTGGCCGTGCCAACGCACT
TTTTCAAATGCGTCTTGGCGGAAGTGGAGGGCCGATACCTGGTCGCGGCC
TTCGTCTTGCCCAACGCTCCCATCCCGCCGGAGGTGCCCTTGACACGCTT
CCTGGTCCCTCTCGAGAACTTGGAGCAAGCGGCAGGGGTGCGTTTCTTCG
CCCAAGCGCTTTCCCAGGAGGATAAGGAGCGACTGGACGGACGCGTGCAA
CTGCTGCGGGGTAccttgggaggggaggagggagggatagcAGGACTCTT
GGCCGCCCAagccccctccacggccctTGTGACGCGGGAGGGCTATGGAC
ACGACTCGGGGcgatggggaaaagggagaaataAAGGTGGGCTCCGGCTC
AATTTGGCGGGGCCCGAGCATCTCTGCGAAGCATTGGCTTGTCAGCTTCC
GCCCGAGAGGTTTTGGGAGCTTACCGATGgcagggccggggggggaaatg
gggggggacggcggaAACGAGGGGGTGACACTACGGAGTCTTCGAATTCG
CTGACACCCTGGTGA
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Synonyms
Publications