rna3154, rna3154 (mRNA) Nannochloropsis gaditana

Overview
Namerna3154
Unique Namerna3154
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2095
Alignment locationCM002460.1:862235..863172 -

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Properties
Property NameValue
Productsideroflexin 2
Orig transcript idgnl|cribi|Naga_100101g19.9053.mrna
Orig protein idgnl|cribi|Naga_100101g19.9053
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:862235..863172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100101g19gene3031Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3154rna3154-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27515.1cds3146Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3154 ID=rna3154|Name=rna3154|organism=Nannochloropsis gaditana|type=mRNA|length=2095bp
TTGATGCGGCAGCGGGAGCTGATGGAGGGGATCGACATTAAGACGCAGGA
GGGGGAGGTGCTGGGTAAGAGCAAAGAGGCCGCCAAGACGGCGGTCGCCC
AAGTTGTGCCCTCCAGGATTTTGATGGCTACACCCGGGATGGTAATCCCT
CCCGTGATCATGGTGCGGTTGGAACAAACGGCTGCACTGCGTGCGACTCC
TAGTCTCGGTGCCCCTATTATGGTGGGCATGACAGGTCTTTTCCTCGCCT
TCTCCACACCTTTGTGCTGCGCACTGTTCCCTCAAGAAGCGTCCATTTCG
CTAAGTCAGATCGAGCCAGAGTTACAGGAAAAGGCAAAGAAAATGAATCC
AGTTCCAACTGTCTTTTACTACAACAAGGGGCTGTAGACAAGCAGGATTG
GACAGCTTTCAAGCCGTGCTCGACAAACTTTAAATTTATTATGATCACCT
ACGCGAAGTCTGGAACGTGAATCTTATCGACGAAGAGAGAAGCAATAGGC
AGAGGTATGGGATAGTTGCAGCATAGCGGACGCATACATAATGACTTCAA
TCAGGAACGGACGCGCCCCAAAAAAATCAATCACGCACACGTCATCGCAT
TAAATCTGTATCTTTAATTTGCTTATACCAACACAACGTGGACTTCAATT
CTCTAGCAGTGGTTTGACCACAGTAAACCTAAAATGGAGCAGGAGGTTAT
TGTGTGCGGCCGAGAGGGTTCGAGCGAGCGGATGCGAGAGCTTTTCCTGC
CTCCCCGTGCAGAGATCAACGCCACTGCTTTCAAGACTTGACTTCTGTCT
CACCGCAGATTCCTGTATGTCACACGCCATCTCAGGTTGTGCTAGACTCG
CACGGCCGTAAATTTGAACGGACAATCGAGGAAGTCAGTTCTGAAAAACA
AAGCGAAGGATTCTAGTCCAGGGGCAGCAGCAACATGGCTAGCAGGCGGG
GCAACGCATCGTATGGAATCCACAAATTCTTCCTCGTGAGCATTCTCTTC
CTCGTACAGACCGCAGTAGGGCAACAGCAACAGCAGCTGCACCGGTACCC
CGGGCCTGGCGGTCCTCCCCGGAGACGACCTCCAGGCCCGAATGCCATTG
AACTGGGAAAGGAGAACAAGCGTGCTACGTATACAGCAATTGCGGGAGGT
GTTCTGGCGGGGTATTGGTTGTCTGGATGGAATTATCGGAGTAAAAACAA
GAAGATGAAGCAGAAGTATGAAAGAGATTTGGCGCACCAGGAGAAGCGGG
TAGAGGACGCCATTCGCTCGGTTAGACAGCAGTACGAAGACGTGTTGGAA
AGAAAGCAGGAGGAATACGTGGAGAAGTACAAGCATCTCCAGTACATCGA
GAATGCTATGGGAGAAGCTGGCATCCCAGTTGATCTCTCCATGGTGTCTC
CGTCAGCTTCACTTCAACAAGACTATGCAGAGTTCAAGCAGCCGGATCTG
AATGGCGACGACAAGATCACGCGGCGGGAGTTCGACCAGTACATGCGTCA
ATATCTGGCCGCGAATCCCGAGTACAGCAAGTACGACTACCCCTCATTCG
ATGAGTTCGACAAGGATGGTGACAATGCCATCACGTTCGCGGAATGGCAG
CAGTATATCCAGGACGCAGAGGCTGCAGCTTTAGCTCAAGAGCAGCTTAT
GTATCAACAACAAAAGAAGGGCAAAATGGCCGGACGCCGGAGATAGACGT
GGAGTATGCGCGGGATGATTAATGCAAGAGTGCTCTCAAGGATTCCTTGA
GGCAATACAAGCATTAAGCAAACGGATGGCTGGATTGTCTCAATGTGGCG
CATACGGGACTTTAAATTCAAACAGCTGGGCCTGGAAAAGACGCGGATGG
AGGTTGGCAATATTCGTGGATGGAATTGAGGACATCAAACGTGCATGAAA
AGGAGAGGGAAAAAACAAATTAGTTTCGCCTGATCGGTATCAGCGCATTT
GTTCTTCCACGTGTTTGCCCTCATACATCACATTTACGAAACCTTTTACT
TTCTATATAATAAACAAACCAGAGAACCCCACTTTTGATACAAATACATG
TCAGTGTCATCTTATCTGTAGCAAGGCAAGATTGTCTCTACTTGT
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protein sequence of rna3154

>rna3154-protein ID=rna3154-protein|Name=rna3154|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MVFGWGKGKAKPEKPVEPEPPKVPRIDLSKPRWDQSTFEGRARHFFSTTN
PLNSLASDAELDRAKTLLEQYKAGTEPPGTTEEQVWEAKHLYDSAYHPET
GEKLFLPGRMSFQVPGNMVITGCMMQFYRSIPAVVFWQWVNQSFNAIVNY
SNRNACLCGHGCWIQPSYRSQSEIEPGDDWTFCASTRSGCC
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mRNA from alignment at CM002460.1:862235..863172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3154 ID=rna3154|Name=rna3154|organism=Nannochloropsis gaditana|type=mRNA|length=938bp|location=Sequence derived from alignment at CM002460.1:862235..863172- (Nannochloropsis gaditana)
ATGGTGTTTGGATGGGGCAAGGGCAAAGCCAAGCCCGAGAAGCCAGTGGA GCCTGAGCCTCCTAAAGTGCCGCGAATCGATTTGAGCAAGGTAAATGATG ACTGTAAAGGGACCAACAAGGTTGTAGATGATTGCTCGTCCTAGAGCATT GTCCAGAATGCTTTGTCAGAAAAAATGAACTCAGGGAGGATGCTGTGTGA TTCGAAGGGACGCGTCGGAAAGGCCAGGTGACTTAGTCCCGGCATTGCAT CGAGAAAGTTTTTGACAGGAGATAGATGGTGGCGATTTGGCCCATACAAG GAAGCCTTGAATAGGAAAATTTGTATACAATGGACAGCCATATGATGTTT GAAATGGTTCACTCAGGTCAAATCCTTTCGTCCGCCCACAATTTGACAGC CTCGATGGGACCAAAGCACCTTCGAAGGCCGTGCTCGCCATTTCTTCAGC ACAACTAATCCTCTCAACAGTCTTGCCTCAGATGCGGAGCTGGACCGTGC CAAGACGCTTCTGGAGCAGTACAAAGCAGGCACGGAGCCCCCGGGGACGA CGGAGGAACAGGTGTGGGAAGCTAAGCACCTGTATGACTCTGCCTATCAC CCCGAGACTGGCGAGAAGCTTTTCTTGCCAGGCAGAATGTCGTTTCAAGT GCCAGGAAATATGGTCATTACCGGATGCATGATGCAGTTCTACCGCTCAA TACCGGCGGTTGTATTCTGGCAATGGGTGAACCAAAGCTTTAATGCCATC GTCAATTACTCAAACCGCAATGCGTCAGCAGGTGTGACCACCGAACAGCT AGGTCAGGCATACGTGGCCGCAACAGCTGCCTCTGTGGCCACGGCTGTTG GATTCAACCGTCTTATCGCTCGCAATCCGAAATTGAGCCAGGGGATGATT GGACGTTTTGTGCCTCTACTCGCAGTGGCTGCTGCTAA
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Coding sequence (CDS) from alignment at CM002460.1:862235..863172-

>rna3154 ID=rna3154|Name=rna3154|organism=Nannochloropsis gaditana|type=CDS|length=1728bp|location=Sequence derived from alignment at CM002460.1:862235..863172- (Nannochloropsis gaditana)
CTGCCTCTGTGGCCACGGCTGTTGGATTCAACCGTCTTATCGCTCGCAAT
CCGAAATTGAGCCAGGGGATGATTGGACGTTTTGTGCCTCTACTCGCAGT
GGCTGCTGCTAACCTCGATGGGACCAAAGCACCTTCGAAGGCCGTGCTCG
CCATTTCTTCAGCACAACTAATCCTCTCAACAGTCTTGCCTCAGATGCGG
AGCTGGACCGTGCCAAGACGCTTCTGGAGCAGTACAAAGCAGGCACGGAG
CCCCCGGGGACGACGGAGGAACAGGTGTGGGAAGCTAAGCACCTGTATGA
CTCTGCCTATCACCCCGAGACTGGCGAGAAGCTTTTCTTGCCAGGCAGAA
TGTCGTTTCAAGTGCCAGGAAATATGGTCATTACCGGATGCATGATGCAG
TTCTACCGCTCAATACCGGCGGTTGTATTCTGGCAATGGGTGAACCAAAG
CTTTAATGCCATCGTCAATTACTCAAACCGCAATGCATGGTGTTTGGATG
GGGCAAGGGCAAAGCCAAGCCCGAGAAGCCAGTGGAGCCTGAGCCTCCTA
AAGTGCCGCGAATCGATTTGAGCAAGCTGCCTCTGTGGCCACGGCTGTTG
GATTCAACCGTCTTATCGCTCGCAATCCGAAATTGAGCCAGGGGATGATT
GGACGTTTTGTGCCTCTACTCGCAGTGGCTGCTGCTAACCTCGATGGGAC
CAAAGCACCTTCGAAGGCCGTGCTCGCCATTTCTTCAGCACAACTAATCC
TCTCAACAGTCTTGCCTCAGATGCGGAGCTGGACCGTGCCAAGACGCTTC
TGGAGCAGTACAAAGCAGGCACGGAGCCCCCGGGGACGACGGAGGAACAG
GTGTGGGAAGCTAAGCACCTGTATGACTCTGCCTATCACCCCGAGACTGG
CGAGAAGCTTTTCTTGCCAGGCAGAATGTCGTTTCAAGTGCCAGGAAATA
TGGTCATTACCGGATGCATGATGCAGTTCTACCGCTCAATACCGGCGGTT
GTATTCTGGCAATGGGTGAACCAAAGCTTTAATGCCATCGTCAATTACTC
AAACCGCAATGCATGGTGTTTGGATGGGGCAAGGGCAAAGCCAAGCCCGA
GAAGCCAGTGGAGCCTGAGCCTCCTAAAGTGCCGCGAATCGATTTGAGCA
AGCTGCCTCTGTGGCCACGGCTGTTGGATTCAACCGTCTTATCGCTCGCA
ATCCGAAATTGAGCCAGGGGATGATTGGACGTTTTGTGCCTCTACTCGCA
GTGGCTGCTGCTAACCTCGATGGGACCAAAGCACCTTCGAAGGCCGTGCT
CGCCATTTCTTCAGCACAACTAATCCTCTCAACAGTCTTGCCTCAGATGC
GGAGCTGGACCGTGCCAAGACGCTTCTGGAGCAGTACAAAGCAGGCACGG
AGCCCCCGGGGACGACGGAGGAACAGGTGTGGGAAGCTAAGCACCTGTAT
GACTCTGCCTATCACCCCGAGACTGGCGAGAAGCTTTTCTTGCCAGGCAG
AATGTCGTTTCAAGTGCCAGGAAATATGGTCATTACCGGATGCATGATGC
AGTTCTACCGCTCAATACCGGCGGTTGTATTCTGGCAATGGGTGAACCAA
AGCTTTAATGCCATCGTCAATTACTCAAACCGCAATGCATGGTGTTTGGA
TGGGGCAAGGGCAAAGCCAAGCCCGAGAAGCCAGTGGAGCCTGAGCCTCC
TAAAGTGCCGCGAATCGATTTGAGCAAG
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Synonyms
Publications