rna3151, rna3151 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3151
Unique Name	rna3151
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2213
Alignment location	CM002460.1:855764..858471 -

Link to JBrowse

Properties


Property Name	Value
Product	zinc transporter
Orig transcript id	gnl\|cribi\|Naga_100015g3.6356.mrna
Orig protein id	gnl\|cribi\|Naga_100015g3.6356
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:855764..858471 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g3	gene3029	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27540.1	cds3143	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3151	rna3151-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:855764..858471-
coding sequence from alignment at CM002460.1:855764..858471-

mRNA sequence

>rna3151 ID=rna3151|Name=rna3151|organism=Nannochloropsis gaditana|type=mRNA|length=2213bp
GGCTTGTTGTAGACATTACTGGCATGGACGGGAGAGGGAGGCCGTCCTGT
CAGGAGGTATGTACGTGTATTCAACCAATTCCTTAGATTGCGGACGCCCG
CAAAGTGGACGAATTTTCCTCAAGGTCGCAGTTGGTTGGAAGAACTAGGT
CTTGTAATACGTAAACTCGTATCCCGTCAGCCGCGCATGGCTTTGATCTG
GTACAAAATGCGACAACCACAAGTGCGAAATCGATAGGATGCTCACGCAA
CACATTTTCCAACATTTTTCCCGTGATGATTTTCTCGCACAGGACGAATA
TTTTGTTCATCAGTTGACTCTCCGACTCGAAATCAATTTCACCTATCTCA
CTTCGTCCTTGGCCTCGTACGTTCCATATGGACACAAATTGTCCCTGCGC
CTGCGTAGCGGACGTTGAAGAATCTTCCAATCATCGTGCAGCCAGCAGAG
AAAAAAACTCTGCCCCAATAGCGGCCTTACCGCCAACACTACCCGAGCAA
GCACAAGCATCAACGTCCACCTCCGCTCGCCCCCCCTTCAAGCGTGCAGA
CTCTGTGGATTCCCCGTCTGTGGCAACCAGTAATCCCGCTGACGCTGGGT
TTGAGGTTTCTTCTGCATGGTCTGTGGCAGGTATTGGCACATGCATCCAA
CTCCGTCATCGGGCGTTCGGGCTGCACATCGCCATGGACATTGGAACTAG
CGCTGGAGAGACGCTGGGGGCAGGGCATATCTTTGTCTCGCATGGCCACA
TTGACCACATCGGTGCTTTGCTAAACCATGCTCGTGCTCGAACGCTTAGT
AACAAACCAGCCAAGTATTATGTGCCTGTTCCGGCCACAGAGCCGCTTCT
GCGGGCGAAGGCAGCTTACGAAGCTCTTGATGGGTGTGCGTTCAATGCCG
AGATTGTAGGAGTGGAACCGGGCGATATATGCCGCATTCATCCCAACGTT
AGGGTGGAGGTTTTCCCGACGAAGCACCGCGTCCCCAGCCAAGGGTACGC
CATAATCCGTGAAAAGAGCAAAGGCTTAAAGGCCGGGTGCCGTAACCTGT
CCTCCCACGAATTGGCGCGTCGCCGGAAGCAAGGAGAGAGCGTCGTTGAG
ATAGAGGACATCGTCGAAGTCGCCTACACGGGAGATACTATCTTGAAAGC
TGTACTCGACCAGCCTTTGGTCAGACAGGCCCGCCTGTTGATTCTTGAGT
GCACCTATCTGGAGGGGGAGATTGTATGGGCCCACAGCTGGCAACACGTG
CATATGCAAGAAATCGTCAAGCATGCTGCAGCTTTTGCCAGCAATGAGCG
GGTCGTCTGCTGCCACGTGTCCAGGAAGTACAAGCGGTGGGACAATGTCT
TGAGGTGTTTCCAGAGCGGCATGGCCCCTGTCCCCGCACTGGCAGCGAAG
ATCGGCGTAACCTTGGCCGGATTTGGGAGGGCGGAACCTGTGACCTGGCT
GGTCGACTACCAAAAGGAACAAGCAGCAGCAGCGATGGCGGCAGCTGCCG
CGGCTGCAGGAGAAGGAGGCTCAGGAAGCCCTGTTGGGCACGCCGAGGGG
CCGCATCGGGGGCCAAGCGGGGGCAACGTTCGTCCCAGGCGTGAGAAAGG
CGGGGCGGATTTGGAGGATATAGGTGTGCAAAGTGTGGATGCGACACCTG
CCGAGGAAACGAGGTGGATGGGATCAAATGGAGGATTAAAGGATGAGCTC
CCCGAGGTGAAGACGAAGGAGGAGGCTAATCGGATGTTGCGGGTCCTGTC
GGAGGATCTCGGGCTGCAACCGAGGGCGGAATCTTTATTGAATTGCTCGG
AGGAGGGACATGAAGAGGAACAGGGCCAAGGAGAGAAACAACAGCAAGAG
CTGAAAGGGGAGAAGAGGGAGTCAGTGGGCAAGGGGTGGGAGGTCACCTC
GGAGGAAAGGGAGGAGGAATCCTCCTTATTCTTTTAAACATAGTTTGGGC
CTTGCTATTCAAAGTGTGAGTGTAATTAGTGTAATAGAGAAAAGAAGGAG
AGAGTGCGGAGGGGAAGGGTGAAAATGTAGAGGAAAGCATTAATAGCAGG
GGCGGTTGGCAGTTTTGTGAATAAATAGAGACAATTTGAAAAAGTAGACC
AGTTGATGCTTTATAAGGACAGAGTCGTCTGCCTCTTAAACTATAATCAT
CATTTTAATGGTACGCATGGCGAAATTTAGTGATCACAAATGAGAAAATC
TCTGTAGCGGCCC

protein sequence of rna3151

>rna3151-protein ID=rna3151-protein|Name=rna3151|organism=Nannochloropsis gaditana|type=polypeptide|length=585bp
MGRGGQNGHNHKPDSATCAHGSGGLSGHTGHTHASAHEKQAQSQQKRADA
KMEQRRVRAKLIAATVFALVFMSVEIAGGILAGSLAIVTDAAHLFTDVAN
FITAIMASHLSETPSTTKHSYGLVRAEVLSALINTGVIVMLAAYLVYEGI
HRIVAWFQGTAPPIDGFLMMVVAIIGVVFNVVLMIIFGHEHGHGHGHSHG
HSHGHSHGHSHGHSHGHSHMHENEEEGVEKGVGRRHVGQGVDVEAGKKRV
WSHDSHGSQHGHTHQGGAVRFPSCDSVCSHKSQAGRGQKSRCSSASTSEE
GTLLVDEEEEGKQGGMVLPMSTTYGSLSSSGVATTYGSLPSSGVAMQAHG
SCHLNGHAHSDGEEEEEQGEDALTGSSTRLTARKLAAHEDPVKISRTRGK
ASTTKKEAKSRNINLEAAHLHVITDLVQSLGVALAGVIIYFKPHWQVVDP
ICTIVFSILICYSVVSMLAKSTHVLLEGVPEGVDPHALHDKLLAIEGVTD
VHDLHVWMLSVGRPLVTVHIKAADPDMAMHKAQAVFTQAGIDHITIQIQR
DECLPNECAHPCVSVACVSTSPNSTSPGRGGCTYL

mRNA from alignment at CM002460.1:855764..858471-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3151 ID=rna3151|Name=rna3151|organism=Nannochloropsis gaditana|type=mRNA|length=2708bp|location=Sequence derived from alignment at CM002460.1:855764..858471- (Nannochloropsis gaditana)
AACGCTGTGGTCTTGGTGGGCATGTCAGTCAATGGTTAGGGCTTTCGCCA
TCACCATCTCGCCTTTTCATGTAGCTTTTTCGTTGGTTTTCTGCCAAAAT
TTCCCGGGCTCACCGCATAATCGACATAACCTCCTTTTCTCCCGTAGGAA
CCGCGCGCCATCTTTGCAAACATAGAGGACCTCCAGTCAAAGCTCCTCTC
CCCGTAGCGAGCGCGGAAAGGCGAAGACAACAAGGATAAGGAAGGTGCGT
TACATTGTCCTTGCTATCATCAAATTGTCATCATGGTTTCCCCGCTCGTT
CAAGCGCCTAATTGATAACCAAAAATCTTCTTTGCCCGTGAAATGTCCAC
GTCGCCCATGATTGTTACGTGTTGGTCCATCGCATGGATTCTCGACACCT
GCCTCAGGCGAGCTCTGTCTCACCAAGTTTTTCGAGCCACCCTGGCGTTC
GGCTTCCTTGCGGACCGGGACCTGTGTGTTCTAACGCTTTCACTCATCTG
ATGAATCTTTTTCTGTTCTGTTCTCTCCCATCCATTGAAGAGGCGATGGG
TCGCGGCGGACAAAATGGACACAATCATAAGCCCGACAGTGCCACCTGCG
CGCATGGCAGCGGTGGATTGTCCGGCCATACGGGGCACACGCACGCATCC
GCGCATGAAAAGCAAGCTCAGAGTCAGCAAAAACGGGCCGATGCGAAGAT
GGAGCAACGACGCGTGCGTGCCAAGCTGATCGCTGCCACCGTGTTCGCCC
TGGTGTTCATGTCCGTTGAAATCGCGGGAGGGATCCTGGCCGGCTCCCTC
GCCATAGTCACCGACGCGGCCCACCTCTTCACGGATGTGGCAAATTTCAT
CACGGCGATCATGGCCAGCCACCTGTCGGAAACCCCCTCCACCACCAAAC
ACTCGTATGGCTTGGTGCGTGCGGAGGTGCTCTCGGCCTTGATCAACACG
GGGGTGATCGTGATGCTGGCTGCTTATCTCGTCTATGAGGGCATTCATCG
CATCGTGGCGTGGTTCCAAGGGACAGCACCACCAATCGATGGATTTCTGA
TGATGGTGGTGGCGATCATAGGTGTGGTGTTCAACGTGGTTCTGATGATC
ATTTTCGGACATGAGCACGGCCACGGCCACGGGCATAGCCACGGGCATAG
CCACGGGCATAGTCACGGCCACAGCCACGGGCATAGTCACGGGCATAGTC
ACATGCACGAGAACGAGGAAGAGGGGGTGGAGAAAGGGGTGGGGCGTCGG
CATGTCGGTCAGGGTGTGGACGTGGAGGCGGGCAAGAAACGCGTCTGGTC
CCATGACTCCCACGGCTCGCAGCACGGGCACACGCACCAAGGCGGCGCTG
TCAGGTTTCCGTCGTGTGACAGCGTCTGCTCTCACAAGTCCCAGGCTGGC
CGGGGGCAGAAGTCACGCTGTAGCAGCGCGTCCACGAGCGAGGAGGGGAC
GTTGCTAGTGGATGAGGAGGAGGAAGGGAAGCAGGGAGGGATGGTCCTAC
CCATGTCTACCACGTATGGAAGTCTGTCGTCCTCAGGGGTGGCTACCACG
TATGGAAGTCTGCCGTCCTCAGGGGTGGCTATGCAAGCCCACGGGTCGTG
TCATCTCAACGGCCATGCACACAGCGACGGGGAGGAGGAGGAGGAGCAAG
GGGAGGATGCCTTGACGGGGTCATCGACCCGGCTGACGGCACGGAAGCTC
GCGGCGCACGAGGATCCGGTGAAGATAAGCAGAACGCGAGGGAAAGCCTC
GACGACGAAGAAGGAGGCTAAGAGCCGGAACATCAACCTGGAGGCGGCTC
ACTTGCACGTGATCACCGACCTGGTCCAGTCCCTCGGGGTCGCTTTGGCG
GGCGTCATTATCTACTTCAAGCCGCATTGGCAGGTGGTCGATCCGATTTG
TACCATTGTCTTTTCCATCTTGATATGCTACTCCGTGGTCAGCATGTTGG
CTAAGAGCACGCATGTCCTCTTGGAAGGCGTCCCGGAGGGCGTGGACCCG
CACGCCCTGCATGACAAACTCCTGGCCATCGAGGGTGTCACCGACGTCCA
CGATCTACACGTGTGGATGTTGTCCGTGGGACGGCCCCTGGTGACAGTGC
ACATCAAGGCCGCAGATCCAGACATGGCGATGCACAAAGCCCAAGCTGTC
TTCACGCAGGCGGGGATAGATCACATCACCATCCAGATCCAACGGGACGA
ATGTCTGCCCAATGAATGCGCGCATCCGTGTGTTTCTGTGGCTTGCGTAT
CAACGTCGCCAAACAGCACATCCCCTGGGAGGGGTGGGTGCACCTACCTG
TAGAAGAATGGCGAGATGAAGGCATGAGAAGGGATGACGCAGGAATAAGG
TGGGGAGAAGACAAAGCTGCGTCGAAGATTTTGTCGATTTCTCTCGCCTG
TGTACAGAAATCTTCCGAAGGAGTGATATCGCTGGAACAAGGTCACGTAA
ACGATAACTTTAAAGTTGATTAACGCTGAAGGAAATATGTTGATTGTGTC
CATACGCGCCCCTAATTGCATGTCGCCAGCCGCGGAAACACCACAGGAAA
CACAGAGGTTTTAGAATATGGATTCATATGAGCAACTGCTTCACAGAAAA
ATTTTGAGGTGACGAACCGGAGGGGAAAAAAGCAAGGAGCGACGAAAGCT
TGGGCCCATCTCTGTTTTAACGTGGAGACTTGGTTTGGGAAATTTTCTTT
GAGAGAAT

Coding sequence (CDS) from alignment at CM002460.1:855764..858471-

>rna3151 ID=rna3151|Name=rna3151|organism=Nannochloropsis gaditana|type=CDS|length=1758bp|location=Sequence derived from alignment at CM002460.1:855764..858471- (Nannochloropsis gaditana)
ATGGGTCGCGGCGGACAAAATGGACACAATCATAAGCCCGACAGTGCCAC
CTGCGCGCATGGCAGCGGTGGATTGTCCGGCCATACGGGGCACACGCACG
CATCCGCGCATGAAAAGCAAGCTCAGAGTCAGCAAAAACGGGCCGATGCG
AAGATGGAGCAACGACGCGTGCGTGCCAAGCTGATCGCTGCCACCGTGTT
CGCCCTGGTGTTCATGTCCGTTGAAATCGCGGGAGGGATCCTGGCCGGCT
CCCTCGCCATAGTCACCGACGCGGCCCACCTCTTCACGGATGTGGCAAAT
TTCATCACGGCGATCATGGCCAGCCACCTGTCGGAAACCCCCTCCACCAC
CAAACACTCGTATGGCTTGGTGCGTGCGGAGGTGCTCTCGGCCTTGATCA
ACACGGGGGTGATCGTGATGCTGGCTGCTTATCTCGTCTATGAGGGCATT
CATCGCATCGTGGCGTGGTTCCAAGGGACAGCACCACCAATCGATGGATT
TCTGATGATGGTGGTGGCGATCATAGGTGTGGTGTTCAACGTGGTTCTGA
TGATCATTTTCGGACATGAGCACGGCCACGGCCACGGGCATAGCCACGGG
CATAGCCACGGGCATAGTCACGGCCACAGCCACGGGCATAGTCACGGGCA
TAGTCACATGCACGAGAACGAGGAAGAGGGGGTGGAGAAAGGGGTGGGGC
GTCGGCATGTCGGTCAGGGTGTGGACGTGGAGGCGGGCAAGAAACGCGTC
TGGTCCCATGACTCCCACGGCTCGCAGCACGGGCACACGCACCAAGGCGG
CGCTGTCAGGTTTCCGTCGTGTGACAGCGTCTGCTCTCACAAGTCCCAGG
CTGGCCGGGGGCAGAAGTCACGCTGTAGCAGCGCGTCCACGAGCGAGGAG
GGGACGTTGCTAGTGGATGAGGAGGAGGAAGGGAAGCAGGGAGGGATGGT
CCTACCCATGTCTACCACGTATGGAAGTCTGTCGTCCTCAGGGGTGGCTA
CCACGTATGGAAGTCTGCCGTCCTCAGGGGTGGCTATGCAAGCCCACGGG
TCGTGTCATCTCAACGGCCATGCACACAGCGACGGGGAGGAGGAGGAGGA
GCAAGGGGAGGATGCCTTGACGGGGTCATCGACCCGGCTGACGGCACGGA
AGCTCGCGGCGCACGAGGATCCGGTGAAGATAAGCAGAACGCGAGGGAAA
GCCTCGACGACGAAGAAGGAGGCTAAGAGCCGGAACATCAACCTGGAGGC
GGCTCACTTGCACGTGATCACCGACCTGGTCCAGTCCCTCGGGGTCGCTT
TGGCGGGCGTCATTATCTACTTCAAGCCGCATTGGCAGGTGGTCGATCCG
ATTTGTACCATTGTCTTTTCCATCTTGATATGCTACTCCGTGGTCAGCAT
GTTGGCTAAGAGCACGCATGTCCTCTTGGAAGGCGTCCCGGAGGGCGTGG
ACCCGCACGCCCTGCATGACAAACTCCTGGCCATCGAGGGTGTCACCGAC
GTCCACGATCTACACGTGTGGATGTTGTCCGTGGGACGGCCCCTGGTGAC
AGTGCACATCAAGGCCGCAGATCCAGACATGGCGATGCACAAAGCCCAAG
CTGTCTTCACGCAGGCGGGGATAGATCACATCACCATCCAGATCCAACGG
GACGAATGTCTGCCCAATGAATGCGCGCATCCGTGTGTTTCTGTGGCTTG
CGTATCAACGTCGCCAAACAGCACATCCCCTGGGAGGGGTGGGTGCACCT
ACCTGTAG

Synonyms

Publications