rna3148, rna3148 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3148
Unique Name	rna3148
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3321
Alignment location	CM002460.1:847776..849273 +

Link to JBrowse

Properties


Property Name	Value
Product	50s ribosomal protein l25 general stress protein ctc
Orig transcript id	gnl\|cribi\|Naga_100015g6.6395.mrna
Orig protein id	gnl\|cribi\|Naga_100015g6.6395
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:847776..849273 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g6	gene3026	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3148	rna3148-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27579.1	cds3140	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:847776..849273+
coding sequence from alignment at CM002460.1:847776..849273+

mRNA sequence

>rna3148 ID=rna3148|Name=rna3148|organism=Nannochloropsis gaditana|type=mRNA|length=3321bp
AGAACGATGTGAACATTTTTTTTCGTGCGAGATACTCGACTTACTCCATC
AGAAGTCTAAATTAGGAATAAGATCAAAGGATCATGAGGTGGGAAAACTT
GTGCCATACCTTGTCAATGCTGCGTAAGACAGACAGTCTTTGCCGGTAAG
TTTCAGCGCCAGGAACCAAATGTCTGCTTACGAATGAGGCAGGGTATATT
GCGCTGATACCAGCTGCGGATAGTCGCGCGTCTGCAACCCCGTCACTGCA
GGAGGACGACATCGCCTAGCAAGATTCAGCTGTTTTAGGAGCATTACAAC
GGTACGTAGGGTGACCGGTGGCCAGATAGTCAACAAGTACATGCAAGAGG
CAGTGAAGAAAAACCAGCGAGTGGGAACCTCTCGCCATGGCGGATGGGAG
TGGGAGAAGCCATAGGACTGAGTTAGAAACATCACCTGGGCTGGCACGGA
TAGCTCTCACATTTTTCTGTTAAGGTAGAACAGCTGATGGTTCCTTTCAT
CTATTTCGCTGGAATGGGACAACGCGTTTTGTTCAATTACGTGGGAGACG
AGGGTGCGTATTGCATCATACATGGAGGACGAGTGTACGTTGGCAGCGAC
AAACACATTTTTGTTCTTCGCGAGGGGAAACATGCACCGCTTTTGAATTG
CAGCTTGGTGCGAAGCAGGCAAAGTGGCCCATCCTCCCATCGACGACTTC
CTAATGACTGTGTCTTCCTGTACGAGTCTTTTGCGAAAATCTTCAAATTC
AACTTCACAAGAAGAGAGCGTCCGGGTCGTTGTCCGTGTGCGACCATTGA
GCCAGAAGGAGCAAAATGATGGACGAACTATCATTGTTCAAGCGAACGAA
GCAGCAGGTGAAATCGTAGTACAAGACCCAAGCGACATGATGTCAGGAAA
TGCAAGCAGTGTTTCCAAATCTTTCAACTTTGATGCCGTGTTTGGGGAAA
ACAGCACACAGCGCCAAGTTTACGATATGTGTGCGGCACCTATTGTAGAA
TCTGTGCTGAATGGTTTCAATGGAACCATATTTGCCTATGGTCAGACAGG
TACCGGGAAAACGTACACAATGGAAGGAGAGAGTATTAAGTCGTCTCAGA
TAACGTCGTCGGCGGAAATAGAGAAAGGGATAATTCCCAATTCATTTCAG
CACATTTTTGACCGTGTAGCTGTCTCAGTGAACCAACAATTCCTAGTCCG
GGCTTCGTATCTCGAAATTTACAATGAAGAAATTCGAGACTTACTTTCCA
AAGACCCTCGAAACAAGCTAGAGTTAAAGGAGCACCCTGATAGCGGAGCA
TTCGTCAAGGATCTTAGGACAATTCTCGTTAGAAATGTTGCCGAAATCAA
CAGAGTCATGCAAACCGGGAAGCGCAATCGTTCAACAGGAGCAACACTTA
TGAATCAAGCCTCGTCTCGTTCGCACTCGGTATTTACGGTCATTGTCGAA
TGCGGCGCAATTGATGAAGACGGGAGCCATGCCTTTCCATCGAATGGCTC
GGATAAGCAGCAGCAAATTATACAGGTCGGCAAGCTTAATTTGGTAGATC
TCGCTGGCAGTGAACGGCAAGGCAAGACTGGTTCAACAGGCGATCGCTTC
AAAGAGGCGACCAAAATTAATCTATCTTTGTCTGCACTCGGCAACGTTAT
CTCGGCACTCGTTGATGGCCGGGCTCACCATATACCGTATAGATATTCTA
AACTCACGCGTCTACTTCAATCATCACTGGGCGGAAACACCAAGACAGTC
ATGTGTGCCAATTGTGGACCTGCCGACTACAACTACGATGAAACTCTTTC
AACACTCAGGTATGCCAATCGGGCCAAGAGTATCAAAAACAAACCGCACA
TCAACGAAGACCCAAAAGATACAATGCTTCGAGAGTTTCGGGATGAAATT
TGTCGGCTTAAGGAACAGCTAGCCGCCCAAGATAAATCAGCTGCGGTTCG
GGTCGGAAGTAGCATCACCTTAGATAGCTCTGCCCAATCCAAGAATGACG
GTGAATTTAAAGAAGATAGGCAGAACAATGGCAGTGGTACTGAGAAGCAA
TTGCAAAAGGCGGTAGCAAAAGCAGAGAAAGACAAAGAAGACTTCAAATT
TCAAGCCAAGCGGGAATTGGATGCGCTACAAAGCAAGTCCTTGGAGGAAA
AAGAGGCTCTGAAGCAACGACTGATGAAAGAGACGGAGGATCGGCGCATC
CTGGAGCAAAAATTGTTTGCGATGGAGGCGAAGCTGATTCAGGGAGGAAC
GTTGTTAGACAGGACACATCAGCACGACCAATTGCGACAAGCGAACGGTC
AAATGGATGAGCAGCAGCAGAAACAGCGGCGACTAGCCCAGGAACTTGCT
ATTAAAGAAGAAGCGAACCTGGTTCTGGAAGATCAATACTCAAGTCTACA
AGAAGAAGTTGCAGCAAAGACCCGAAAGCTAGAAAGACTTGTTGGGAAAT
ATCGGTCAGCTACACGGGAGGTGCAGGATCTTCAATCGGAGTTTCAGCGA
GAGCGGGAAGACCTACTCGAGACAATTCGGGAATTGACTCGACAACTGAA
GCTAAAAGACATGGTGGTGGAATATTTTGTACCGCCCGAGATTGCCACGA
AGATAAAAGAGCGAGCAATATGGAACGAGGAGCAAGATGCTTGGACGATG
TCGTCCTTGCACCTCACTGGCAACAACCTTCAGCACGTAGACTTGAGGCG
ACGCGTAGCATCGCCCACGTCACGGCGACCAGAAACACAATTCGCGCGAG
CCCAACGCTTGCATGACAAGGACCCTGCTTTCCGTGCTGATAATCTTTTA
GATCTAGAACTTGATATGGAGGATGGAGCCCCGCCATTGCAGCACTACAG
CGATGCAGTGAAGAAAAAAGAAAAGGATTCCTTGCTGCCGCTTCAGCGCA
TTTTGAATCCTTCCAATGGAACCGAGACACCTCCAGATTTTGATAAGGAT
GGCGAGAAGACCATTTTATTCCCAGTTTCATCTCCTTATCTTCGGTATGC
CGACCATGTGCAGCAGGCATCGACAAACATACTAAGTGAGAGGGCGAGAA
AATAAATGTAGTACTTGCGCCTTTCAAGCAAGAATGAGGGCCAGTCTCAG
GAAATGTCATCTTTGATAGTCTAACGCTTCAGGATTAGGGTAAACTTAAG
CAACACTGCAGCACGGTATGCTTGAAAGCAGCTTGAAACTTTCTTCTCAG
CCCTCTGCATCGGAACGTAAGGACATTATTTATTCTCTGTATTGAAAACT
GGTTCATTGAAATTATATGCCGGTTGCTGTATTCACAAGGAATTTTACCC
AAAAAAATATCATTATTTTAG

protein sequence of rna3148

>rna3148-protein ID=rna3148-protein|Name=rna3148|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MGRETDMVRRLGVALAGSSTNICKRAVNGGKGAMSVVARVRPPPRRQASL
QSLQLLSHSTTFRAIASSSVCSAVGGGSEGGVSHKTDKVSSSHDWAALVR
DYGKSDAVSSSIPMEVPTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGP
GVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQRVLIRDL
DRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRF
IRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLG
VVKGKNIVTSEVGTGETDTASETT

mRNA from alignment at CM002460.1:847776..849273+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3148 ID=rna3148|Name=rna3148|organism=Nannochloropsis gaditana|type=mRNA|length=1498bp|location=Sequence derived from alignment at CM002460.1:847776..849273+ (Nannochloropsis gaditana)
TGCTTAAGTAGACTCGCCGATGACCGATGTGCATTAAAGTGAAAAATCAA
AATACCATCTTAGTATACCTCCTTGAggtccaacctcctcccccccccct
tccaattCTTCGGATGGCGTCATTCTGATCCCGTGTCCGCCATAATACTA
ATATACCTGAGAGCACGCCTTTCTGAAAAGAGGGTATATAAGCTGGTAGC
ATGTTTTCCATGGTAATCCTCCTGATAAAATTGATGATATTGATGAGATG
GGGTTGGAAGGAACCCTGCACTGTATCTATCACATAACCTTTTttcatct
cttccccctgtaTCCTCTGTCATTGACATGGACACCTGGTGCATTGCCTT
AGAGGCACTAGTAGGTCGCTTCCGAAATGGGGCGCGAGACTGACATGGTG
CGCCGTTTGGGGGTGGCATTAGCGGGCTCGTCGACAAATATCTGCAAGAG
AGCCGTCaacggtgggaaaggggccaTGAGCGTGGTAGCAAGGGTGCGAC
CACCGCCGCGACGACAGGCGTCATTACAGTCCTTACAACTTCTAAGCCAC
TCAACCACATTCCGTGCTATTGCCAGTAGCAGTGTTTGCAGTGCggtagg
gggaggaagtgagggggGAGTCAGTCACAAAACTGACAAAGTAAGCTCCA
GTCATGACTGGGCTGCCTTGGTCCGGGATTACGGGAAATCGGATGCCGTG
TCTAGTAGTATACCAATGGAAGTCCCAACGATCGAAGCCACAGTTCGTTG
TTTGGATGACACAGGATCGCGTTACAGCAGGCGTTtgcgagaagagggga
aattACCCGGTGTTTTGTACGGCCCTGGCGTGGACGGCGATAAAGAGAGG
TACCTGATCACCGTGAAGCGTCGAGACATCGAACGTCACATGCGACGACT
AGGAGACTCGATCGCCAGCACTGTCTTTGATTTGCAGCTGGGGGACTACA
AGCAGCGGGTGCTAATTCGAGACCTGGATCGCGATCCTGGTACGGCCATG
CCTATTGCCGTGAACTTTCTCCGGTATCGACCCGGCTATCCCGTGAAGGT
CCCCGTCTGCTTCATCAACGAAGAGCTGTGCCTGCCTCTAAAACGGGGCG
GCATGCTGTTGAGCATAAACCGCTTCATTCGTGTGTCGTGCGAAGGAGAA
ACACTTCCCGAGATGCTGCTGGTGGACCTGACAGGGGCGAAGAGCGGTCA
AAAGATCGGTCTGGAACGCGTgacctttcccccctctgtgCAGCCCCACG
AGGTCCAGGAGGACTTCGTTTTGGGGGTCGTAAAGGGGAAAAATATCGTC
ACGTCTGAGGTTGGTACGGGTGAGACAGACACCGCCTCTGAGACCACGTG
ACTTGGAAAGGGTAGGTCGTGAGGGTTTAGGGCCGTGTGCACGGTAGCGT
AGAAGCAAATGCCTGCTTGTGGCATGGCTCGCGAGCAATAAGCATGAAAG
ACCTCAATCCCAATTAAATCAGAAGTCGCTTTGCGCATTTCGATTTTT

Coding sequence (CDS) from alignment at CM002460.1:847776..849273+

>rna3148 ID=rna3148|Name=rna3148|organism=Nannochloropsis gaditana|type=CDS|length=975bp|location=Sequence derived from alignment at CM002460.1:847776..849273+ (Nannochloropsis gaditana)
ATGGGGCGCGAGACTGACATGGTGCGCCGTTTGGGGGTGGCATTAGCGGG
CTCGTCGACAAATATCTGCAAGAGAGCCGTCaacggtgggaaaggggcca
TGAGCGTGGTAGCAAGGGTGCGACCACCGCCGCGACGACAGGCGTCATTA
CAGTCCTTACAACTTCTAAGCCACTCAACCACATTCCGTGCTATTGCCAG
TAGCAGTGTTTGCAGTGCggtagggggaggaagtgagggggGAGTCAGTC
ACAAAACTGACAAAGTAAGCTCCAGTCATGACTGGGCTGCCTTGGTCCGG
GATTACGGGAAATCGGATGCCGTGTCTAGTAGTATACCAATGGAAGTCCC
AACGATCGAAGCCACAGTTCGTTGTTTGGATGACACAGGATCGCGTTACA
GCAGGCGTTtgcgagaagaggggaaattACCCGGTGTTTTGTACGGCCCT
GGCGTGGACGGCGATAAAGAGAGGTACCTGATCACCGTGAAGCGTCGAGA
CATCGAACGTCACATGCGACGACTAGGAGACTCGATCGCCAGCACTGTCT
TTGATTTGCAGCTGGGGGACTACAAGCAGCGGGTGCTAATTCGAGACCTG
GATCGCGATCCTGGTACGGCCATGCCTATTGCCGTGAACTTTCTCCGGTA
TCGACCCGGCTATCCCGTGAAGGTCCCCGTCTGCTTCATCAACGAAGAGC
TGTGCCTGCCTCTAAAACGGGGCGGCATGCTGTTGAGCATAAACCGCTTC
ATTCGTGTGTCGTGCGAAGGAGAAACACTTCCCGAGATGCTGCTGGTGGA
CCTGACAGGGGCGAAGAGCGGTCAAAAGATCGGTCTGGAACGCGTgacct
ttcccccctctgtgCAGCCCCACGAGGTCCAGGAGGACTTCGTTTTGGGG
GTCGTAAAGGGGAAAAATATCGTCACGTCTGAGGTTGGTACGGGTGAGAC
AGACACCGCCTCTGAGACCACGTGA

Synonyms

Publications