EWM27579.1, cds3140 (CDS) Nannochloropsis gaditana

Overview
NameEWM27579.1
Unique Namecds3140
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:848152..849126 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27579.1
Product50s ribosomal protein l25 general stress protein ctc
Orig transcript idgnl|cribi|Naga_100015g6.6395.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:848152..849126 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:00080975S rRNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR011035Ribosomal_L25/Gln-tRNA_synth
IPR020056Rbsml_L25/Gln-tRNA_synth_b-brl
IPR020057Ribosomal_L25_b-dom
IPR029751Ribosomal_L25
IPR001021Ribosomal_L25_long
Homology
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|585109846|gb|EWM27579.1| (50s ribosomal protein l25 general stress protein ctc [Nannochloropsis gaditana])

HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0
Query:    1 MGRETDMVRRLGVALAGSSTNICKRAVNGGKGAMSVVARVRPPPRRQASLQSLQLLSHSTTFRAIASSSVCSAVGGGSEGGVSHKTDKVSSSHDWAALVRDYGKSDAVSSSIPMEVPTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGKNIVTSEVGTGETDTASETT 324
            MGRETDMVRRLGVALAGSSTNICKRAVNGGKGAMSVVARVRPPPRRQASLQSLQLLSHSTTFRAIASSSVCSAVGGGSEGGVSHKTDKVSSSHDWAALVRDYGKSDAVSSSIPMEVPTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGKNIVTSEVGTGETDTASETT
Sbjct:    1 MGRETDMVRRLGVALAGSSTNICKRAVNGGKGAMSVVARVRPPPRRQASLQSLQLLSHSTTFRAIASSSVCSAVGGGSEGGVSHKTDKVSSSHDWAALVRDYGKSDAVSSSIPMEVPTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGKNIVTSEVGTGETDTASETT 324          
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|698784917|ref|XP_009825502.1| (ribosomal protein L25, Ctc-form [Aphanomyces astaci] >gi|574120005|gb|ETV85484.1| ribosomal protein L25, Ctc-form [Aphanomyces astaci])

HSP 1 Score: 142.124 bits (357), Expect = 4.490e-37
Identity = 80/201 (39.80%), Postives = 120/201 (59.70%), Query Frame = 0
Query:  107 AVSSSIPMEVPTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGD--YKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
            A+S++ P        T R  D  GSR +RRLR++G LPG+LYG GV+GD  R L+++ + D ER  R+L  S+ + V+++  GD     +VL+RD    P T +P +VNFLRY+PG  V +P+ F+N+E    LKRGG + ++   I  +   E +P  L VD+ G   G++I LE +TFP  V P  V+ + V+  + GK
Sbjct:   16 ALSTAAPAPAAHFTLTPRLKD--GSREARRLRKQGLLPGILYGEGVNGDASRVLVSMNQVDFEREYRKLRTSMGNQVYEVTTGDGGPATKVLLRDATLHPVTDIPQSVNFLRYKPGRKVHIPLDFLNQEGSPGLKRGGYINNVYHEIPCTIASEVIPSKLYVDVNGMHVGERIYLENITFPEHVTP-LVKPESVVATIAGK 213          
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|1173948640|gb|OQR96746.1| (50S ribosomal protein L25 [Achlya hypogyna])

HSP 1 Score: 140.198 bits (352), Expect = 2.138e-36
Identity = 74/178 (41.57%), Postives = 114/178 (64.04%), Query Frame = 0
Query:  130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGD--YKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
            GSR SRRLR EG+LPG+LYG G DG+K + L+++ + D ER  R+L  S+A+ V+++ +GD   K +VL+RD+   P T +P+ VNFLR++PG  V +P+ F+N+E    LKRGG + ++   I  +   + +P  L VD+ G   G +I LE +TFP +V P ++    V+  + GK
Sbjct:   33 GSRDSRRLRREGQLPGILYGEGSDGEKSKVLVSLAQTDFEREYRKLRTSMANQVYEVAVGDDGAKTKVLLRDITLHPVTDVPLTVNFLRFKPGRTVYIPLDFLNQESSPGLKRGGYINNVRHDIPCTVNTDEIPTTLDVDVNGMHVGARIYLENITFPENVVP-QIAPRAVVATIAGK 209          
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|673044427|ref|XP_008876174.1| (ribosomal protein L25, Ctc-form [Aphanomyces invadans] >gi|574467981|gb|ETV95001.1| ribosomal protein L25, Ctc-form [Aphanomyces invadans])

HSP 1 Score: 138.658 bits (348), Expect = 9.448e-36
Identity = 77/191 (40.31%), Postives = 114/191 (59.69%), Query Frame = 0
Query:  117 PTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGD--YKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
            PT   T+      GSR SRRLR++G LPG+LYG G++GD  R L+++ + D ER  R+L  S+ + V+++  G+     +VL+RD    P T +P +VNFLRY+PG  V +P+ F+N+E    LKRGG + ++   I  +   E +P  L VD+ G   GQ+I LE +TFP  V P  V+   V+  + GK
Sbjct:   23 PTTHFTLTPRLKDGSRESRRLRKQGLLPGILYGEGINGDSTRVLVSMNQVDFEREYRKLRTSMGNQVYEVSTGEGGPVTKVLLRDATLHPVTDVPQSVNFLRYKPGRKVHIPLDFLNQESSPGLKRGGYINNVYHEIPCTIASEAIPTKLFVDVNGMHVGQRIYLEDITFPEHVTP-LVKAKAVVATIAGK 212          
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|301092281|ref|XP_002996999.1| (50S ribosomal protein L25, putative [Phytophthora infestans T30-4] >gi|262112188|gb|EEY70240.1| 50S ribosomal protein L25, putative [Phytophthora infestans T30-4])

HSP 1 Score: 136.732 bits (343), Expect = 7.553e-35
Identity = 70/163 (42.94%), Postives = 103/163 (63.19%), Query Frame = 0
Query:  130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQ-RVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPH 291
            GSR SRRLR++G LPGVLYG G +G  ER L+++  R  ER  R+L  SI + VF +Q+GD+   +  +RD+  DP T +P+AVNFLR++PG  V +P+ ++NEE    LKRGG +  I+  +  +   + +P  L +D+ G   G K+ LE + FP  V P+
Sbjct:   42 GSRASRRLRKKGLLPGVLYGEGEEGKDERMLVSLPTRAFEREHRKLWTSIENQVFHVQVGDHPPVKAYMRDVQLDPVTDVPLAVNFLRFKPGRTVSIPITYLNEEGSPGLKRGGFINHIHHSLDCTIFTDKIPITLQIDVNGLHVGDKVYLESIKFPEGVVPN 204          
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|675209347|ref|XP_008913558.1| (ribosomal protein L25, Ctc-form [Phytophthora parasitica INRA-310] >gi|566011844|gb|ETI34755.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica P1569] >gi|567949320|gb|ETK75052.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica] >gi|567977979|gb|ETL28473.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica] >gi|568007489|gb|ETL81728.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica] >gi|568037349|gb|ETM34934.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica] >gi|568086339|gb|ETN01231.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica INRA-310] >gi|570315560|gb|ETO63508.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica P1976] >gi|570939349|gb|ETP04606.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica CJ01A1] >gi|570969624|gb|ETP32743.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica P10297] >gi|970638931|gb|KUF82230.1| 50S ribosomal protein L25 [Phytophthora nicotianae] >gi|970648326|gb|KUF87898.1| hypothetical protein AM588_10005241 [Phytophthora nicotianae])

HSP 1 Score: 136.346 bits (342), Expect = 1.005e-34
Identity = 71/163 (43.56%), Postives = 99/163 (60.74%), Query Frame = 0
Query:  130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQ-RVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPH 291
            GSR SRRLR++G LPGVLYG G DG  ER L++   R  ER  R+L  SI + VF +Q+G     +  +RD+  DP T +P+AVNFLRY+PG  V +P+ ++NEE    LKRGG +  I   +  +   + +P  L +D+ G   G K+ LE + FP  V P+
Sbjct:   42 GSRASRRLRKQGLLPGVLYGEGEDGKDERVLVSFPTRAFEREHRKLWTSIENQVFHVQVGGQAPVKAYMRDVQLDPVTDVPLAVNFLRYKPGRTVSIPITYLNEEGSPGLKRGGFINHIYHSLDCTISTDKIPTTLQIDVNGLHVGDKVYLESIKFPEGVVPN 204          
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|1173956452|gb|OQS03227.1| (50S ribosomal protein L25 [Thraustotheca clavata])

HSP 1 Score: 135.191 bits (339), Expect = 2.293e-34
Identity = 69/166 (41.57%), Postives = 106/166 (63.86%), Query Frame = 0
Query:  141 GKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYK-QRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
            G LPG+LYG G DG+  + L+++ + D ER  R+L +S+ + V+++ +GD K  +VL+RD+   P T +P+ VNFLR++PG  V +P+ F+NEE    LKRGG + ++   I    + ET+P  L VD+ G   GQ+I LE +TFP +V P  V+E  V+  + GK
Sbjct:   50 GLLPGILYGEGSDGENSKVLVSMNQTDFEREYRKLRNSMGNQVYEVAIGDAKPTKVLLRDITLHPVTDVPLTVNFLRFKPGRTVHIPLAFLNEETSPGLKRGGYINNVRHEIPCKIDTETIPTTLDVDVNGMHVGQRIYLENITFPENVTP-LVKERSVIATIAGK 214          
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|813135725|ref|XP_012198586.1| (hypothetical protein SPRG_04795 [Saprolegnia parasitica CBS 223.65] >gi|641537021|gb|KDO30892.1| hypothetical protein SPRG_04795 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 135.191 bits (339), Expect = 2.700e-34
Identity = 71/177 (40.11%), Postives = 110/177 (62.15%), Query Frame = 0
Query:  130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYK-QRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
            GSR SRRLR  G+LPG+LYG G  G+K + L+T+ + D ER  R+L  S+A+ V+++ +G+    +VL+RD+   P T +P+ VNFLR++PG  V +P+ F+N+E    LKRGG + ++   I      + +P  L VD+ G   G++I LE +TFP  ++P  V    V+  + GK
Sbjct:   38 GSRESRRLRRGGQLPGILYGEGSTGEKTKVLVTMDQTDFEREYRKLRSSMANQVYEVSVGESAPTKVLLRDITLHPVTDVPLTVNFLRFKPGRTVHIPLDFLNQEGSPGLKRGGYINNVRHDIPCKVNSDVIPSTLDVDVNGMHVGERIYLENITFPEHIEP-LVAPRAVIATIAGK 213          
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|669152388|ref|XP_008611756.1| (hypothetical protein SDRG_07684 [Saprolegnia diclina VS20] >gi|530736642|gb|EQC34884.1| hypothetical protein SDRG_07684 [Saprolegnia diclina VS20])

HSP 1 Score: 134.806 bits (338), Expect = 3.517e-34
Identity = 71/177 (40.11%), Postives = 110/177 (62.15%), Query Frame = 0
Query:  130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYK-QRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
            GSR SRRLR  G+LPG+LYG G  G+K + L+T+ + D ER  R+L  S+A+ V+++ +G+    +VL+RD+   P T +P+ VNFLR++PG  V +P+ F+N+E    LKRGG + ++   I      + +P  L VD+ G   G++I LE +TFP  ++P  V    V+  + GK
Sbjct:   38 GSRESRRLRRGGQLPGILYGEGSTGEKTKVLVTMDQTDFEREYRKLRSSMANQVYEVSVGESAPTKVLLRDITLHPVTDVPLTVNFLRFKPGRTVHIPLDFLNQEGSPGLKRGGYINNVRHDIPCKVNADDIPSTLDVDVNGMHVGERIYLENITFPEHIEP-LVAPRAVIATIAGK 213          
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|695380233|ref|XP_009516750.1| (hypothetical protein PHYSODRAFT_468557 [Phytophthora sojae] >gi|348689661|gb|EGZ29475.1| hypothetical protein PHYSODRAFT_468557 [Phytophthora sojae])

HSP 1 Score: 134.42 bits (337), Expect = 5.245e-34
Identity = 70/163 (42.94%), Postives = 100/163 (61.35%), Query Frame = 0
Query:  130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQ-RVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPH 291
            GSR SRRLR++G LPGVLYG G DG  ER L++   R  ER  R+L  SI + VF +Q+ D    +  +RD+  DP T +P+AVNFLR++PG  V +P+ ++NEE    LKRGG +  I+  +  S   + +P  L +D+ G   G K+ L+ + FP  V P+
Sbjct:   45 GSRASRRLRKQGFLPGVLYGEGEDGKDERVLVSFPTRTFERMHRKLWTSIENQVFQVQVDDQPPVKAYMRDVQLDPVTDVPVAVNFLRFKPGRKVSIPITYLNEEGSPGLKRGGFINHIHHSLECSIFTDDIPTTLQIDVNGLHVGDKVYLDAIKFPEGVVPN 207          
The following BLAST results are available for this feature:
BLAST of EWM27579.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109846|gb|EWM27579.1|0.000e+0100.0050s ribosomal protein l25 general stress protein c... [more]
gi|698784917|ref|XP_009825502.1|4.490e-3739.80ribosomal protein L25, Ctc-form [Aphanomyces astac... [more]
gi|1173948640|gb|OQR96746.1|2.138e-3641.5750S ribosomal protein L25 [Achlya hypogyna][more]
gi|673044427|ref|XP_008876174.1|9.448e-3640.31ribosomal protein L25, Ctc-form [Aphanomyces invad... [more]
gi|301092281|ref|XP_002996999.1|7.553e-3542.9450S ribosomal protein L25, putative [Phytophthora ... [more]
gi|675209347|ref|XP_008913558.1|1.005e-3443.56ribosomal protein L25, Ctc-form [Phytophthora para... [more]
gi|1173956452|gb|OQS03227.1|2.293e-3441.5750S ribosomal protein L25 [Thraustotheca clavata][more]
gi|813135725|ref|XP_012198586.1|2.700e-3440.11hypothetical protein SPRG_04795 [Saprolegnia paras... [more]
gi|669152388|ref|XP_008611756.1|3.517e-3440.11hypothetical protein SDRG_07684 [Saprolegnia dicli... [more]
gi|695380233|ref|XP_009516750.1|5.245e-3442.94hypothetical protein PHYSODRAFT_468557 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3148rna3148Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications