EWM27579.1, cds3140 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|585109846|gb|EWM27579.1| (50s ribosomal protein l25 general stress protein ctc [Nannochloropsis gaditana]) HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0 Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0
Query: 1 MGRETDMVRRLGVALAGSSTNICKRAVNGGKGAMSVVARVRPPPRRQASLQSLQLLSHSTTFRAIASSSVCSAVGGGSEGGVSHKTDKVSSSHDWAALVRDYGKSDAVSSSIPMEVPTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGKNIVTSEVGTGETDTASETT 324
MGRETDMVRRLGVALAGSSTNICKRAVNGGKGAMSVVARVRPPPRRQASLQSLQLLSHSTTFRAIASSSVCSAVGGGSEGGVSHKTDKVSSSHDWAALVRDYGKSDAVSSSIPMEVPTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGKNIVTSEVGTGETDTASETT
Sbjct: 1 MGRETDMVRRLGVALAGSSTNICKRAVNGGKGAMSVVARVRPPPRRQASLQSLQLLSHSTTFRAIASSSVCSAVGGGSEGGVSHKTDKVSSSHDWAALVRDYGKSDAVSSSIPMEVPTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGKNIVTSEVGTGETDTASETT 324
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|698784917|ref|XP_009825502.1| (ribosomal protein L25, Ctc-form [Aphanomyces astaci] >gi|574120005|gb|ETV85484.1| ribosomal protein L25, Ctc-form [Aphanomyces astaci]) HSP 1 Score: 142.124 bits (357), Expect = 4.490e-37 Identity = 80/201 (39.80%), Postives = 120/201 (59.70%), Query Frame = 0
Query: 107 AVSSSIPMEVPTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGD--YKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
A+S++ P T R D GSR +RRLR++G LPG+LYG GV+GD R L+++ + D ER R+L S+ + V+++ GD +VL+RD P T +P +VNFLRY+PG V +P+ F+N+E LKRGG + ++ I + E +P L VD+ G G++I LE +TFP V P V+ + V+ + GK
Sbjct: 16 ALSTAAPAPAAHFTLTPRLKD--GSREARRLRKQGLLPGILYGEGVNGDASRVLVSMNQVDFEREYRKLRTSMGNQVYEVTTGDGGPATKVLLRDATLHPVTDIPQSVNFLRYKPGRKVHIPLDFLNQEGSPGLKRGGYINNVYHEIPCTIASEVIPSKLYVDVNGMHVGERIYLENITFPEHVTP-LVKPESVVATIAGK 213
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|1173948640|gb|OQR96746.1| (50S ribosomal protein L25 [Achlya hypogyna]) HSP 1 Score: 140.198 bits (352), Expect = 2.138e-36 Identity = 74/178 (41.57%), Postives = 114/178 (64.04%), Query Frame = 0
Query: 130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGD--YKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
GSR SRRLR EG+LPG+LYG G DG+K + L+++ + D ER R+L S+A+ V+++ +GD K +VL+RD+ P T +P+ VNFLR++PG V +P+ F+N+E LKRGG + ++ I + + +P L VD+ G G +I LE +TFP +V P ++ V+ + GK
Sbjct: 33 GSRDSRRLRREGQLPGILYGEGSDGEKSKVLVSLAQTDFEREYRKLRTSMANQVYEVAVGDDGAKTKVLLRDITLHPVTDVPLTVNFLRFKPGRTVYIPLDFLNQESSPGLKRGGYINNVRHDIPCTVNTDEIPTTLDVDVNGMHVGARIYLENITFPENVVP-QIAPRAVVATIAGK 209
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|673044427|ref|XP_008876174.1| (ribosomal protein L25, Ctc-form [Aphanomyces invadans] >gi|574467981|gb|ETV95001.1| ribosomal protein L25, Ctc-form [Aphanomyces invadans]) HSP 1 Score: 138.658 bits (348), Expect = 9.448e-36 Identity = 77/191 (40.31%), Postives = 114/191 (59.69%), Query Frame = 0
Query: 117 PTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGD--YKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
PT T+ GSR SRRLR++G LPG+LYG G++GD R L+++ + D ER R+L S+ + V+++ G+ +VL+RD P T +P +VNFLRY+PG V +P+ F+N+E LKRGG + ++ I + E +P L VD+ G GQ+I LE +TFP V P V+ V+ + GK
Sbjct: 23 PTTHFTLTPRLKDGSRESRRLRKQGLLPGILYGEGINGDSTRVLVSMNQVDFEREYRKLRTSMGNQVYEVSTGEGGPVTKVLLRDATLHPVTDVPQSVNFLRYKPGRKVHIPLDFLNQESSPGLKRGGYINNVYHEIPCTIASEAIPTKLFVDVNGMHVGQRIYLEDITFPEHVTP-LVKAKAVVATIAGK 212
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|301092281|ref|XP_002996999.1| (50S ribosomal protein L25, putative [Phytophthora infestans T30-4] >gi|262112188|gb|EEY70240.1| 50S ribosomal protein L25, putative [Phytophthora infestans T30-4]) HSP 1 Score: 136.732 bits (343), Expect = 7.553e-35 Identity = 70/163 (42.94%), Postives = 103/163 (63.19%), Query Frame = 0
Query: 130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQ-RVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPH 291
GSR SRRLR++G LPGVLYG G +G ER L+++ R ER R+L SI + VF +Q+GD+ + +RD+ DP T +P+AVNFLR++PG V +P+ ++NEE LKRGG + I+ + + + +P L +D+ G G K+ LE + FP V P+
Sbjct: 42 GSRASRRLRKKGLLPGVLYGEGEEGKDERMLVSLPTRAFEREHRKLWTSIENQVFHVQVGDHPPVKAYMRDVQLDPVTDVPLAVNFLRFKPGRTVSIPITYLNEEGSPGLKRGGFINHIHHSLDCTIFTDKIPITLQIDVNGLHVGDKVYLESIKFPEGVVPN 204
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|675209347|ref|XP_008913558.1| (ribosomal protein L25, Ctc-form [Phytophthora parasitica INRA-310] >gi|566011844|gb|ETI34755.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica P1569] >gi|567949320|gb|ETK75052.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica] >gi|567977979|gb|ETL28473.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica] >gi|568007489|gb|ETL81728.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica] >gi|568037349|gb|ETM34934.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica] >gi|568086339|gb|ETN01231.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica INRA-310] >gi|570315560|gb|ETO63508.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica P1976] >gi|570939349|gb|ETP04606.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica CJ01A1] >gi|570969624|gb|ETP32743.1| ribosomal protein L25, Ctc-form [Phytophthora parasitica P10297] >gi|970638931|gb|KUF82230.1| 50S ribosomal protein L25 [Phytophthora nicotianae] >gi|970648326|gb|KUF87898.1| hypothetical protein AM588_10005241 [Phytophthora nicotianae]) HSP 1 Score: 136.346 bits (342), Expect = 1.005e-34 Identity = 71/163 (43.56%), Postives = 99/163 (60.74%), Query Frame = 0
Query: 130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQ-RVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPH 291
GSR SRRLR++G LPGVLYG G DG ER L++ R ER R+L SI + VF +Q+G + +RD+ DP T +P+AVNFLRY+PG V +P+ ++NEE LKRGG + I + + + +P L +D+ G G K+ LE + FP V P+
Sbjct: 42 GSRASRRLRKQGLLPGVLYGEGEDGKDERVLVSFPTRAFEREHRKLWTSIENQVFHVQVGGQAPVKAYMRDVQLDPVTDVPLAVNFLRYKPGRTVSIPITYLNEEGSPGLKRGGFINHIYHSLDCTISTDKIPTTLQIDVNGLHVGDKVYLESIKFPEGVVPN 204
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|1173956452|gb|OQS03227.1| (50S ribosomal protein L25 [Thraustotheca clavata]) HSP 1 Score: 135.191 bits (339), Expect = 2.293e-34 Identity = 69/166 (41.57%), Postives = 106/166 (63.86%), Query Frame = 0
Query: 141 GKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYK-QRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
G LPG+LYG G DG+ + L+++ + D ER R+L +S+ + V+++ +GD K +VL+RD+ P T +P+ VNFLR++PG V +P+ F+NEE LKRGG + ++ I + ET+P L VD+ G GQ+I LE +TFP +V P V+E V+ + GK
Sbjct: 50 GLLPGILYGEGSDGENSKVLVSMNQTDFEREYRKLRNSMGNQVYEVAIGDAKPTKVLLRDITLHPVTDVPLTVNFLRFKPGRTVHIPLAFLNEETSPGLKRGGYINNVRHEIPCKIDTETIPTTLDVDVNGMHVGQRIYLENITFPENVTP-LVKERSVIATIAGK 214
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|813135725|ref|XP_012198586.1| (hypothetical protein SPRG_04795 [Saprolegnia parasitica CBS 223.65] >gi|641537021|gb|KDO30892.1| hypothetical protein SPRG_04795 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 135.191 bits (339), Expect = 2.700e-34 Identity = 71/177 (40.11%), Postives = 110/177 (62.15%), Query Frame = 0
Query: 130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYK-QRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
GSR SRRLR G+LPG+LYG G G+K + L+T+ + D ER R+L S+A+ V+++ +G+ +VL+RD+ P T +P+ VNFLR++PG V +P+ F+N+E LKRGG + ++ I + +P L VD+ G G++I LE +TFP ++P V V+ + GK
Sbjct: 38 GSRESRRLRRGGQLPGILYGEGSTGEKTKVLVTMDQTDFEREYRKLRSSMANQVYEVSVGESAPTKVLLRDITLHPVTDVPLTVNFLRFKPGRTVHIPLDFLNQEGSPGLKRGGYINNVRHDIPCKVNSDVIPSTLDVDVNGMHVGERIYLENITFPEHIEP-LVAPRAVIATIAGK 213
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|669152388|ref|XP_008611756.1| (hypothetical protein SDRG_07684 [Saprolegnia diclina VS20] >gi|530736642|gb|EQC34884.1| hypothetical protein SDRG_07684 [Saprolegnia diclina VS20]) HSP 1 Score: 134.806 bits (338), Expect = 3.517e-34 Identity = 71/177 (40.11%), Postives = 110/177 (62.15%), Query Frame = 0
Query: 130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYK-QRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGK 305
GSR SRRLR G+LPG+LYG G G+K + L+T+ + D ER R+L S+A+ V+++ +G+ +VL+RD+ P T +P+ VNFLR++PG V +P+ F+N+E LKRGG + ++ I + +P L VD+ G G++I LE +TFP ++P V V+ + GK
Sbjct: 38 GSRESRRLRRGGQLPGILYGEGSTGEKTKVLVTMDQTDFEREYRKLRSSMANQVYEVSVGESAPTKVLLRDITLHPVTDVPLTVNFLRFKPGRTVHIPLDFLNQEGSPGLKRGGYINNVRHDIPCKVNADDIPSTLDVDVNGMHVGERIYLENITFPEHIEP-LVAPRAVIATIAGK 213
BLAST of EWM27579.1 vs. NCBI_GenBank
Match: gi|695380233|ref|XP_009516750.1| (hypothetical protein PHYSODRAFT_468557 [Phytophthora sojae] >gi|348689661|gb|EGZ29475.1| hypothetical protein PHYSODRAFT_468557 [Phytophthora sojae]) HSP 1 Score: 134.42 bits (337), Expect = 5.245e-34 Identity = 70/163 (42.94%), Postives = 100/163 (61.35%), Query Frame = 0
Query: 130 GSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQ-RVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPH 291
GSR SRRLR++G LPGVLYG G DG ER L++ R ER R+L SI + VF +Q+ D + +RD+ DP T +P+AVNFLR++PG V +P+ ++NEE LKRGG + I+ + S + +P L +D+ G G K+ L+ + FP V P+
Sbjct: 45 GSRASRRLRKQGFLPGVLYGEGEDGKDERVLVSFPTRTFERMHRKLWTSIENQVFQVQVDDQPPVKAYMRDVQLDPVTDVPVAVNFLRFKPGRKVSIPITYLNEEGSPGLKRGGFINHIHHSLECSIFTDDIPTTLQIDVNGLHVGDKVYLDAIKFPEGVVPN 207 The following BLAST results are available for this feature:
BLAST of EWM27579.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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