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Properties
| Property Name | Value |
|---|
| Product | citrate synthase |
| Orig transcript id | gnl|cribi|Naga_100015g11.6365.mrna |
| Orig protein id | gnl|cribi|Naga_100015g11.6365 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:835055..837674 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3143 ID=rna3143|Name=rna3143|organism=Nannochloropsis gaditana|type=mRNA|length=3341bp
AGCGGAATACGGCGGCTGAAGGGCCATCGCTACGAGGGCTCCACGTTTGG
ATTTTGTGGCATGGGTCTCGATGTCAATCGGATTGAAATGGAGAGGTGTC
TCAGTGTTGGCTTGATTTTTTTATTGGTGTTGTGCAAAGGAATTCAACAC
GCGTTTTCTCTTCCTTGAGACGAGCGAGCGAGGAGGCGGATCCTCTCAAG
CAAGCCTTGGGTTCATGTCGTTATACGCATATCACAAAGTCTTTCGAGCA
CAAGTTCTCGTTCAGGTCTCATCTTTCACAGATAAACGAACTTTACATAG
GTAATATCAGGGGCAAAAGGAAGATGGCTGGTCTCTTGTGAGTCCACCAT
TCTCTGCTCACGTTTTGAGGAGCCTGCGGCCACCTAGCACGCCCAGCTTA
AAGCTCGTGCTCGGCGCCCTCAAGACGTCAGAAGAGACAGTTTTTTTGTC
AAATCACAGACAAAGACGATAGGCAAGCGTTCAGCTTCAAGACTTTGGAC
GCAGTGTGGACATCGCGTCTAAGTGTGTGCATACTTATTTGTTGATATTT
GCTCGGACCGGAGCCGATCCGCAGCCTGTAAACAACCACCAAATCAGTGA
GAAAATAGAGCCAGATACTTGCACGGGGCCAAGATGGGGGACTTATTGGT
CGTGCACCGTTTGTGCCTGTGATTGCCCAGATTTGGCTTTCTTACTCTTA
AGGCAATACTCCTCTCCGAGTGCTGTCTCTCTCTCCAGTCTATAATTCGG
CCATCGGTTCGTAAGATTCCCCCGTATCGCTGTTCGTAAGGAATGGAGGG
ATCCTCAAAACGATGGAATAGCAAGCATCAGCTCCATACACAACAACAAT
TTTTTTCACGATCTCCCTCGCCATCGTTGAGCAACACCAGCAACAACAGT
CCTTTCGCAGATGCTGTCCTTCACCAACAGCAACTTAATCAGCATTCACA
CCCTGATGACCCGCTCCACTACTCTCAACGTTCCCGTGCTGAAGTCTCTC
GCATCCCCATCGATGCGGTTGCGGGGCCATCTGCCGGCGGTGCGGCCTTT
GGGGACGATTATCCGTTGCATCGGTCGGTCATGGCAGTCTCACGAGGCGG
GCACAGTGCCGTGGGCAATAACCAAGGAGGTGTTGAGGTGGTCGCGCCGC
CCGCCCTCCCGTTCCTCCCGGCCTCGACCGCTACGCCATTCTCTGCAGCT
TACTTCGGCGGAGCGCGATACTCTCCCACGGGATTGCCCCTGGCAGACCT
AGCTCCCTTAAAGTTTATCAAGGACGAGAGCAGTGCGAATCGGTACAGCA
CGGGTAGCAGCAGCGGAAGCATCAGCATCAGCGGTAATAGCCTCGCGTCA
GTTTCGCCGTCGGTCATGCGTGGTGAGGTGGAAGATGGAGTCGGTGTCAA
GACTTTTCTCTCTATGTCGAATGGCAACAGCAGCACTGCCATGTTGGAGT
GGCGCAGCGTGCCAGCCCTGCCTTTATATTTGGAACCCAATAACCATGCC
ATGCTGGCCCCTGTCGTAGAGGCGAAGTCTGACACAGAGAAAATGAAGTT
CCTGGCTTCGATCATGAAACTGGTGGAGCGGACTTTCGCTCGCTGTCAGG
TCGACTATGTCTTCAAGGCTGACAAGTGTAAATGGAAAGCAGCCCGTCAC
CGGGCCATGTCTCGCGTGGACTTTCGCTGCCGTGTGTATCGCGAAGGCGG
CACCAATACAGGATTGGTGGTGGAATTCCAGAAGCGCTTGGGTGACTATT
TCTTGATGCGGGATGTCATGGAGAGTTTCTTGGCGGGCGCGGAACAGGCG
GGTCTCGTCCGCGTCACGGGAGGACATGGAAGCGGAGAAAGTCAGGGCAG
CCTCGATCACACTAACACTCCAAGCGAGCATGCGGTTTTCGCTTCGACTG
ATCCCTTCCAAAATTTGGGAGGTAGTGGTAGTGCTGCTAATTTCCTGTCT
CCGCCCAGCTTCGGGCGCTCCTTCACTGCCAGCGCCAATGAATCCTTGTT
GCACACTAAGTCCTCCGGCATGAGTGCTGACTCTAACGTTGCTTCGCCTG
TTCATTCAGACCCTGTAGCGTACGCATCCGATAGTGCCGTCCTCGCCCCA
CTCCTAGAAATGGCCACGGGTGATTGCGACTTGGCCCGCCTGGAAGGTGT
CCTTGGTCTCGCCAAGCTGTCGGTGCTGGAAGACAACCGGGCTGTGCTGA
AGGACGCGGGGGCGATTCCTATCTTGGTATCTATCATCAAACACATGCAT
ATCGAGCCGGCGGTACGACAAGCGGCGGTGACCGCTCTCTCCAACTTGTC
TGAGAGCGCCTCTTGCAAGCATCCCTTGGTAGAGGCGGGGGTGGTGCGTA
GCCTTCTGCGTTTGGCGGAGCAGACTACGAAGAAGGGTGCGGTCCAGAAA
AGTGGGTGTCATCAGTCGTCCTCGGCTTCCTCCACCGGTTCCATGGCATC
TTCTTGGAATGTCCTTGTTTCGAGATGTCTGTACATGGATTTGGAAATTG
GGAGAGAAAGCGCGCGGACCCTGGCGAATCTTTCTGAGGAGCACGCGGCC
GTCATGATAAGGGATCTTGGCCGGGATGGGGTGAAGGAGTTCCTGAAATC
GGTCGACAGTGTGGAGGACGAAAGACTGCGCATGCATGCCCGGCGATTTA
AGACCCGCATGGGCCAAGTCGTGTGTTGACGGAGGAACGCAAGGCGTGGG
CACGTGTGATGTGTTTTGCATGAGGACAGGAAGGAAGACAAGCAGTTAAA
TGGACATGAAAAGCAAGGGAGCTTTGGAAGCGTGAAAGAAATGAGCCGAA
GAATGAAAGGACAGAGAGTTGCGACGACGAGGATCACCGCATAGAAGTAA
GATCATGATGTTGGAGGGCGGCACAGGCATATCTTGACGAAATAGGGACA
GGAAAAGGCAAGGGAAACGCAGAGCGAAATGCTGACAAGCATACATGATC
AATGTCGTGTATATAAGCTTGGATGGCGTCTGGAGTCATGGTTACGGGAA
GGAAAGACTGCAAAATTACAAGGACATCTTAAGTGGTACAAACACATAGC
CTGTGCACGGCCACACCCAATTATTGACCTGTATTGGTTTCTGTCTCGTA
CTTTCCGTCCCTATCGGCTGGAGGACCGCGAAGTGTGCCCTATGAAGTGT
GATTCCTGGTGGAGTAGGATGTCTGAATGATCCCTAGTCTGCTGATACGA
ACTCCGTCGCATTAAAAGTCAGGGAAGTGAAAAGCAGGTATGAAGACATG
CACAGTGAATAGAACGAATCGGAGAAAACGGTGCACATGTTCGAAACAAC
AATGGGAAGAATCAAATTTCGCTTATTTCGCAAATTTACGG back to topprotein sequence of rna3143 >rna3143-protein ID=rna3143-protein|Name=rna3143|organism=Nannochloropsis gaditana|type=polypeptide|length=467bp
MITHMSRRLRNTVAPSMKSLATRGMASIQETLTELVPVKQAELVALKKEH
GHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKL
PTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVV
ALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDI
LDVWAKLPELAALVFSNTYKDGSVGSKDPSLDYSANFARRLGYNKPEFDE
LMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGL
ANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVL
RKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPN
VDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPK
SVTSKWILEHVNNSKSQ back to topmRNA from alignment at CM002460.1:835055..837674- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3143 ID=rna3143|Name=rna3143|organism=Nannochloropsis gaditana|type=mRNA|length=2620bp|location=Sequence derived from alignment at CM002460.1:835055..837674- (Nannochloropsis gaditana)
GGGTGGCCCCTTGCCTTGCCCGCTTGGGGTGGTGCACGGAGATTCAGCAC
GGTGTTCACAGACGCGGTGGCCGCGGGAAGGCGTCACGTGCTGTGTTTAG
GTCTTTTCGTGTCGGTTACGGCATGTGCCGTGAGGGAGGAGGAATTCCAG
CACTTCGAGAGGGAGATACCCTCGCTCCGCCGCCGCAATGCCCGAACCGA
CCATAAAACCCAAACTTGCACGGCTCACCGCTCGCGATCGTTGAATGTGA
CCGCAGAGATGATGTTTAAAGGTCGACCAGGACCCTTTTTGCGTGTCAAT
GTGCCCACTTTGTCCCCGTAATCAAGGCTTCTCTTGCAACAGACTTTCTC
CGCCTCCGTATTCAACAGACTCGCAGCAGCACGCAGCAAACAACGGTCAC
CATGATCACGCATATGTCCCGTCGCCTCCGCAATACCGTGGCTCCATCCA
TGAAGGTAGGCTTCTCATAGTTGGGTGGGAAAAAATAAAAAAAAGCAACT
TTCACGGGTCCGGGGCTATCGATTTGCTTTGTGCAGGGTATGTTGCGGAG
GCTCATTCCCATCCGGAACGCTTCAAATGTCCTCCTCTTTCTTCGTGCCG
GGAGTCATATGCCTTCCGCTTCTTGATAGCGAAGGGAGTAAAGCTCTAAT
TGGATTTTCCCTCTCACACCGGAGCCGGAAAATCGATGATTCTTCTCATA
TTCATATGTAGTTCCCGGGCGGCTTGCTCTCTATCTCGACTTCCCTGTTC
TGTCATGACGTGCCTCCGAAGATGCGTTGATTCATATTCTGTTTTGACCT
TGACCTCCCCTCACTCCCAATTCTCTGTTTTGCTGCAGTCACTGGCCACG
CGGGGTATGGCATCCATTCAGGAGACCCTCACGGAGCTTGTGCCCGTCAA
GCAAGCCGAGCTCGTCGCTCTGAAAAAAGAGCACGGACACAAGGTCATCG
GCGATGTAACCGTGGATCAATGCATTGGGGGCGGGCGAGACATCAAGTCT
CTTTTCTGGGAAACTTCGCTCCTGGACGCGCAAGAGGGCATCCGCTTCCG
AGGCTATTCGATCCCGGAGCTGCAGCAGAAGCTCCCCACCTTCAAAGGGC
CTGCCGGACAGGGAGAACCCACCCCAGAGGCCTTGGTCTGGCTGATGCTC
ACAGACACGATCCCTACCAAGGCAGAAGCGGACTCCTTGACGCATGAGCT
TTACAAGCGTTCCGAGATCCCCCAGCACGTGGTCGCGCTCCTCAAGTCCT
TGCCCAAGTCGCTCCACCCGATGAGCCAGTTGGTCGTGGGCCTCATGGCT
CTGCAGAAGGACAGCAAATTCGCGGCGGCCTACGCGAGCGGCGTTCACAA
GAAGGAATATTGGAAGCACACGCTGGAAGACATCCTGGACGTATGGGCCA
AGCTGCCAGAGCTCGCAGCTTTGGTGTTCAGCAACACGTACAAAGACGGG
TCTGTCGGGAGCAAGGATCCTTCCCTGGACTACTCCGCCAATTTCGCCCG
GCGTCTGGGCTACAATAAACCCGAGTTCGACGAGCTCATGCGCCTGTACC
TCGTCATCCATTCCGATCACGAGGGAGGGAATGCCTCGGCGCATACCACT
CACCTGGTCGGCTCGACCCTCTCCGACCCCTACCTGTCCTACTCGGCGGG
CCTCAATGCCTTGGCGGGCCCCCTGCATGGACTGGCCAATCAGGAAGTGC
TTGGGTGGATATTGGACCTGCAAAAGAAATTCAAAGCGGAGGGGAAGCCT
GTGAACAAGGAGACCATCACGCAGTTCGCATGGGAGACACTCAAGTCGGG
CAAGGTCATCCCGGGCTACGGCCACGCCGTGCTTCGGAAAACCGATCCCC
GCTACACCTCTCAGCGAGAGTTTGCCTTGAAATACTTGCCGGATGACGAA
CTCTTCAAGATTGTGGGCACGATCTACGAGGTGGTCCCGGACGTGTTGAC
GGAGCACGGGAAGACCAAGAACCCCTACCCGAACGTGGACTCCCACTCTG
GCGTCTTGCTCTGGCACTACGGCTTCAAAGAGTTCAACTACTACACGGTA
TTGTTTGGAGTTTCGCGGGCCTTGGGAGCCTTGTCGCAGGTGTTTTGGGA
CCGGGCTCTGGGGATGCCTCTGGAGCGACCGAAGTCTGTCACCTCTAAGT
GGATCCTGGAGCATGTGAACAACAGCAAAAGTCAGTAAAGCCGGCACAAG
AGCGCTTTCTTGGCTCGCATCCAGCTACGCGGGCATGGACCGGGCGAAGG
GATGGGAAAAACTGATCCAATAAAGGACTACAAGCCAGGTATGGTGAAAG
ACGGATGGGAGAGCGTGTTTTTCGACACGGAGGAGCATTGGCAGCTCGGG
GAAAGAAGCAGGGCGGCTTGTGGGGGGAATCCATCGGTCAATTTTGGCGG
TTTGAAACCTTTAAGGTATGATTCCTGTGATGATCGCAGCCGCGGGAGTA
GAACAGCAGCATGCAAAAATAATCCGCTTGATGGAGAGAAGACGAAGAGA
AGGGAATGGAAATATCCAGAGGTGTACTGTCAAGACTCGCGTCTCATTTT
TAAGCTGGTTCACGAAAGAAATAGGAATTGAACAAATTCCCGTGCGTCCG
TAAATTTGCGAAATAAGCGA back to topCoding sequence (CDS) from alignment at CM002460.1:835055..837674- >rna3143 ID=rna3143|Name=rna3143|organism=Nannochloropsis gaditana|type=CDS|length=2808bp|location=Sequence derived from alignment at CM002460.1:835055..837674- (Nannochloropsis gaditana)
TCACTGGCCACGCGGGGTATGGCATCCATTCAGGAGACCCTCACGGAGCT
TGTGCCCGTCAAGCAAGCCGAGCTCGTCGCTCTGAAAAAAGAGCACGGAC
ACAAGGTCATCGGCGATGTAACCGTGGATCAATGCATTGGGGGCGGGCGA
GACATCAAGTCTCTTTTCTGGGAAACTTCGCTCCTGGACGCGCAAGAGGG
CATCCGCTTCCGAGGCTATTCGATCCCGGAGCTGCAGCAGAAGCTCCCCA
CCTTCAAAGGGCCTGCCGGACAGGGAGAACCCACCCCAGAGGCCTTGGTC
TGGCTGATGCTCACAGACACGATCCCTACCAAGGCAGAAGCGGACTCCTT
GACGCATGAGCTTTACAAGCGTTCCGAGATCCCCCAGCACGTGGTCGCGC
TCCTCAAGTCCTTGCCCAAGTCGCTCCACCCGATGAGCCAGTTGGTCGTG
GGCCTCATGGCTCTGCAGAAGGACAGCAAATTCGCGGCGGCCTACGCGAG
CGGCGTTCACAAGAAGGAATATTGGAAGCACACGCTGGAAGACATCCTGG
ACGTATGGGCCAAGCTGCCAGAGCTCGCAGCTTTGGTGTTCAGCAACACG
TACAAAGACGGGTCTGTCGGGAGCAAGGATCCTTCCCTGGACTACTCCGC
CAATTTCGCCCGGCGTCTGGGCTACAATAAACCCGAGTTCGACGAGCTCA
TGCGCCTGTACCTCGTCATCCATTCCGATCACGAGGGAGGGAATGCCTCG
GCGCATACCACTCACCTGGTCGGCTCGACCCTCTCCGACCCCTACCTGTC
CTACTCGGCGGGCCTCAATGCCTTGGCGGGCCCCCTGCATGGACTGGCCA
ATCAGGAAGTGCTTGGGTGGATATTGGACCTGCAAAAGAAATTCAAAGCG
GAGGGGAAGCCTGTGAACAAGGAGACCATCACGCAGTTCGCATGGGAGAC
ACTCAAGTCGGGCAAGGTCATCCCGGGCTACGGCCACGCCGTGCTTCGGA
AAACCGATCCCCGCTACACCTCTCAGCGAGAGTTTGCCTTGAAATACTTG
CCGGATGACGAACTCTTCAAGATTGTGGGCACGATCTACGAGGTGGTCCC
GGACGTGTTGACGGAGCACGGGAAGACCAAGAACCCCTACCCGAACGTGG
ACTCCCACTCTGGCGTCTTGCTCTGGCACTACGGCTTCAAAGAGTTCAAC
TACTACACGGTATTGTTTGGAGTTTCGCGGGCCTTGGGAGCCTTGTCGCA
GGTGTTTTGGGACCGGGCTCTGGGGATGCCTCTGGAGCGACCGAAGTCTG
TCACCTCTAAGTGGATCCTGGAGCATGTGAACAACAGCAAAAGTCAGTAA
ATGATCACGCATATGTCCCGTCGCCTCCGCAATACCGTGGCTCCATCCAT
GAAGTCACTGGCCACGCGGGGTATGGCATCCATTCAGGAGACCCTCACGG
AGCTTGTGCCCGTCAAGCAAGCCGAGCTCGTCGCTCTGAAAAAAGAGCAC
GGACACAAGGTCATCGGCGATGTAACCGTGGATCAATGCATTGGGGGCGG
GCGAGACATCAAGTCTCTTTTCTGGGAAACTTCGCTCCTGGACGCGCAAG
AGGGCATCCGCTTCCGAGGCTATTCGATCCCGGAGCTGCAGCAGAAGCTC
CCCACCTTCAAAGGGCCTGCCGGACAGGGAGAACCCACCCCAGAGGCCTT
GGTCTGGCTGATGCTCACAGACACGATCCCTACCAAGGCAGAAGCGGACT
CCTTGACGCATGAGCTTTACAAGCGTTCCGAGATCCCCCAGCACGTGGTC
GCGCTCCTCAAGTCCTTGCCCAAGTCGCTCCACCCGATGAGCCAGTTGGT
CGTGGGCCTCATGGCTCTGCAGAAGGACAGCAAATTCGCGGCGGCCTACG
CGAGCGGCGTTCACAAGAAGGAATATTGGAAGCACACGCTGGAAGACATC
CTGGACGTATGGGCCAAGCTGCCAGAGCTCGCAGCTTTGGTGTTCAGCAA
CACGTACAAAGACGGGTCTGTCGGGAGCAAGGATCCTTCCCTGGACTACT
CCGCCAATTTCGCCCGGCGTCTGGGCTACAATAAACCCGAGTTCGACGAG
CTCATGCGCCTGTACCTCGTCATCCATTCCGATCACGAGGGAGGGAATGC
CTCGGCGCATACCACTCACCTGGTCGGCTCGACCCTCTCCGACCCCTACC
TGTCCTACTCGGCGGGCCTCAATGCCTTGGCGGGCCCCCTGCATGGACTG
GCCAATCAGGAAGTGCTTGGGTGGATATTGGACCTGCAAAAGAAATTCAA
AGCGGAGGGGAAGCCTGTGAACAAGGAGACCATCACGCAGTTCGCATGGG
AGACACTCAAGTCGGGCAAGGTCATCCCGGGCTACGGCCACGCCGTGCTT
CGGAAAACCGATCCCCGCTACACCTCTCAGCGAGAGTTTGCCTTGAAATA
CTTGCCGGATGACGAACTCTTCAAGATTGTGGGCACGATCTACGAGGTGG
TCCCGGACGTGTTGACGGAGCACGGGAAGACCAAGAACCCCTACCCGAAC
GTGGACTCCCACTCTGGCGTCTTGCTCTGGCACTACGGCTTCAAAGAGTT
CAACTACTACACGGTATTGTTTGGAGTTTCGCGGGCCTTGGGAGCCTTGT
CGCAGGTGTTTTGGGACCGGGCTCTGGGGATGCCTCTGGAGCGACCGAAG
TCTGTCACCTCTAAGTGGATCCTGGAGCATGTGAACAACAGCAAAAGTCA
GTAAATGATCACGCATATGTCCCGTCGCCTCCGCAATACCGTGGCTCCAT
CCATGAAG back to top
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