EWM27549.1, cds3135 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27549.1
Unique Name	cds3135
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002460.1:837220..837273 -
Alignment location	CM002460.1:835487..836836 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27549.1
Product	citrate synthase
Orig transcript id	gnl\|cribi\|Naga_100015g11.6365.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:837220..837273 -
CM002460.1	supercontig	CM002460.1:835487..836836 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016740	transferase activity
GO:0004108	citrate (Si)-synthase activity
GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Vocabulary: **Biological Process**
Term	Definition
GO:0006091	generation of precursor metabolites and energy
GO:0005975	carbohydrate metabolic process
GO:0006099	tricarboxylic acid cycle
GO:0044262	cellular carbohydrate metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR016141	Citrate_synthase-like_core
IPR019810	Citrate_synthase_AS
IPR016142	Citrate_synth-like_lrg_a-sub
IPR010109	Citrate_synthase_euk
IPR002020	Citrate_synthase-like

Homology

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BLAST of EWM27549.1 vs. NCBI_GenBank
Match: gi|585109816|gb|EWM27549.1| (citrate synthase [Nannochloropsis gaditana])

HSP 1 Score: 960.674 bits (2482), Expect = 0.000e+0
Identity = 467/467 (100.00%), Postives = 467/467 (100.00%), Query Frame = 0

Query:    1 MITHMSRRLRNTVAPSMKSLATRGMASIQETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSKDPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWILEHVNNSKSQ 467
            MITHMSRRLRNTVAPSMKSLATRGMASIQETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSKDPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWILEHVNNSKSQ
Sbjct:    1 MITHMSRRLRNTVAPSMKSLATRGMASIQETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSKDPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWILEHVNNSKSQ 467

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BLAST of EWM27549.1 vs. NCBI_GenBank
Match: gi|676389299|ref|XP_009037928.1| (hypothetical protein AURANDRAFT_37826 [Aureococcus anophagefferens] >gi|323451419|gb|EGB07296.1| hypothetical protein AURANDRAFT_37826 [Aureococcus anophagefferens])

HSP 1 Score: 687.567 bits (1773), Expect = 0.000e+0
Identity = 318/448 (70.98%), Postives = 375/448 (83.71%), Query Frame = 0

Query:   10 RNTVAPSMKSLATRGMASIQETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSKDPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWI 457
            R+ +  + ++   R  +S++E L E +P KQAEL  +K +HG KV+G+VTVDQCIGGGR +K + WETSLLDA EGIRFRGY+IPE Q+ LPTFKGPAG GEPTPEAL WL+LT  +PTK +ADSLT EL+ RS++P+HV AL+K+LPK++HPM+Q  +GL A Q +SKFA AY+ GVHK +YW  T ED++DV AKLPE+AA V+ NTY DGS+ ++D SLDYSANF R LG   P FDELMRLYL IH+DHEGGNASAH THLVGSTLSDPY SY AGLNALAGPLHGLANQEVL WI DL+ KF AEGK VN+ETIT FAW+TL +G+VIPG+GHAVLRKTDPRYT QREFA K+LPDD+LFKIV TIY+V+P VLTEHGKTKNPYPNVDSHSGVLLWHYGF ++ YYTVLFGVSR +GALSQVFWDRALG+PLERPKS+T+ WI
Sbjct:    5 RSALRTARQASQLRCASSLKEVLAEQIPAKQAELKEIKTKHGSKVLGEVTVDQCIGGGRGVKCMLWETSLLDAAEGIRFRGYTIPECQEILPTFKGPAGDGEPTPEALTWLLLTGEVPTKEQADSLTAELFARSKLPEHVTALMKTLPKTMHPMTQFSLGLQACQTESKFAKAYSDGVHKSQYWDSTYEDVIDVIAKLPEIAAAVYRNTYFDGSI-TRDHSLDYSANFCRMLGMESPAFDELMRLYLCIHTDHEGGNASAHATHLVGSTLSDPYNSYVAGLNALAGPLHGLANQEVLAWIQDLKAKFDAEGKAVNEETITAFAWDTLNNGQVIPGFGHAVLRKTDPRYTCQREFAFKHLPDDDLFKIVDTIYKVMPGVLTEHGKTKNPYPNVDSHSGVLLWHYGFTQYEYYTVLFGVSRGIGALSQVFWDRALGLPLERPKSLTTGWI 451

[Close]

BLAST of EWM27549.1 vs. NCBI_GenBank
Match: gi|669165126|ref|XP_008618125.1| (citrate synthase [Saprolegnia diclina VS20] >gi|530730235|gb|EQC28477.1| citrate synthase [Saprolegnia diclina VS20])

HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0
Identity = 306/450 (68.00%), Postives = 367/450 (81.56%), Query Frame = 0

Query:    9 LRNTVAPSMKSLATRGMASIQETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSK-DPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWI 457
            LR   A +     +   +S+ E L E VP++Q  +  LK EHG+KV+G+VTVDQCIGG RD+K + WETSLLDA+EGIRFRGY+IPELQ+KLPT       GEP PE L+WL+LT  IP+KA+ADSLT E + RS++P HV A+L  LPK++HPM+Q  + +MA+Q DS FA  Y  G+HK  YW HT ED+L+V A++PE+AA ++ N+Y D  +  + D S+DY+ANFAR LGYN P FDELMRLYLVIHSDHEGGNASAHTTHLVGSTL+DPYLS +AGLNALAGPLHGLANQEVLGWI+DL ++FK++   VNKETITQFAW+TL SGKVIPGYGHAVLRKTDPRY+ QREFALK++P+D LFKIV TIY+V+P VLTEHGKTKNPYPNVDSHSGVLL HYG  + NYYTVLFGVSRA+G LSQ+FWDRALG+PLERPKSVTS+WI
Sbjct:    8 LRRAAAKTSTKAFSTSTSSLFEVLKEQVPLRQEAMKKLKAEHGNKVLGEVTVDQCIGGARDVKCMLWETSLLDAEEGIRFRGYTIPELQKKLPT---AVEGGEPLPEGLIWLLLTGEIPSKAQADSLTAEFHARSKLPDHVKAVLCDLPKNMHPMTQFSIAIMAMQTDSIFARKYQEGIHKSTYWHHTYEDMLNVIARIPEIAATIYRNSYFDECLDMQYDSSVDYAANFARLLGYNDPHFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLADPYLSVAAGLNALAGPLHGLANQEVLGWIMDLDEEFKSKNLDVNKETITQFAWDTLNSGKVIPGYGHAVLRKTDPRYSCQREFALKHMPEDRLFKIVETIYQVMPGVLTEHGKTKNPYPNVDSHSGVLLHHYGLTQKNYYTVLFGVSRAMGVLSQLFWDRALGLPLERPKSVTSEWI 454

[Close]

BLAST of EWM27549.1 vs. NCBI_GenBank
Match: gi|813189056|ref|XP_012207518.1| (citrate (Si)-synthase [Saprolegnia parasitica CBS 223.65] >gi|641527428|gb|KDO21715.1| citrate (Si)-synthase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 305/450 (67.78%), Postives = 367/450 (81.56%), Query Frame = 0

Query:    9 LRNTVAPSMKSLATRGMASIQETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSK-DPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWI 457
            LR   A +     +   +S+ E L E VP++Q  +  LK EHG+KV+G+VTVDQCIGG RD+K + WETSLLDA+EGIRFRGY+IPELQ+KLPT       GEP PE L+WL+LT  IP+KA+ADSLT E + RS++P HV A+L  LPK++HPM+Q  + +MA+Q DS FA  Y  G+HK  YW HT ED+L+V A++PE+AA ++ N+Y D  +  + D S+DY+ANFAR LGYN P FDELMRLYLVIHSDHEGGNASAHTTHLVGSTL+DPYLS +AGLNALAGPLHGLANQEVLGWI+DL ++FK++   VNKETITQFAW+TL SGKVIPGYGHAVLRKTDPRY+ QREFALK++P+D LF+IV TIY+V+P VLTEHGKTKNPYPNVDSHSGVLL HYG  + NYYTVLFGVSRA+G LSQ+FWDRALG+PLERPKSVTS+WI
Sbjct:    8 LRRAAAKTSTKAFSTSTSSLFEVLKEQVPLRQEAMKKLKAEHGNKVLGEVTVDQCIGGARDVKCMLWETSLLDAEEGIRFRGYTIPELQKKLPT---AVEGGEPLPEGLIWLLLTGEIPSKAQADSLTAEFHARSKLPDHVKAVLCDLPKNMHPMTQFSIAIMAMQTDSIFARKYQEGIHKSTYWHHTYEDMLNVIARIPEIAATIYRNSYFDECLDMQYDSSVDYAANFARLLGYNDPHFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLADPYLSVAAGLNALAGPLHGLANQEVLGWIMDLDEEFKSKNLAVNKETITQFAWDTLNSGKVIPGYGHAVLRKTDPRYSCQREFALKHMPEDRLFQIVETIYQVMPGVLTEHGKTKNPYPNVDSHSGVLLHHYGLTQKNYYTVLFGVSRAMGVLSQLFWDRALGLPLERPKSVTSEWI 454

[Close]

BLAST of EWM27549.1 vs. NCBI_GenBank
Match: gi|1210511572|dbj|GAX29386.1| (citrate synthase [Fistulifera solaris])

HSP 1 Score: 649.047 bits (1673), Expect = 0.000e+0
Identity = 316/463 (68.25%), Postives = 369/463 (79.70%), Query Frame = 0

Query:    1 MITHMSRRL-RNTVAPSMKSLATRGMASIQETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSKDPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWILEHVN 462
            MI+  +  L R T++ S    + R + ++QETL   VP KQA+L  LKKEHG  VIG+VT+DQCIGG R +K + WETS LDA+EGIRFRG +IPE Q  LPT+ G  G GEP  E+L WL+LT  +PTK +ADSLT EL+ RS +P HVV LL SLPK +HPM+QL +GLMA Q +SKF+ AYA GV KKEY  H LEDIL V A+LPE+AA ++ N Y DG+V  KD SLDYS NF R LGY+ P FDELMRLYL IH+DHEGGNASAH THLVGSTLSDPYLSYS GLNALAGPLHGLANQEVL WI +L+ KF AEGK VN E+IT+FAWETLK+GKVIPGYGHAVLRKTDPRYT QREFALK++PDD LFK+V TIY+V+P +L EHGK  NPYPNVDSHSGVLLWHYGF ++ YYTVLFGVSRA+GALSQ++WDRALG+PLERPKSVT +W+   V 
Sbjct:    4 MISKSASALSRKTLSSSFAKTSVRSITTLQETLAAQVPEKQAKLAQLKKEHGSHVIGNVTIDQCIGGARSVKCMLWETSNLDAEEGIRFRGLTIPECQAVLPTYSGKTGDGEPLLESLFWLLLTGEVPTKEQADSLTAELHARSTLPAHVVPLLNSLPKQMHPMTQLSIGLMAAQTESKFSKAYADGVPKKEYHLHALEDILSVVAQLPEIAATIYRNVYFDGTV-DKDLSLDYSGNFCRMLGYDDPSFDELMRLYLCIHTDHEGGNASAHATHLVGSTLSDPYLSYSGGLNALAGPLHGLANQEVLKWIQELKSKFDAEGKEVNAESITEFAWETLKAGKVIPGYGHAVLRKTDPRYTCQREFALKHIPDDPLFKLVDTIYQVMPGILKEHGKVANPYPNVDSHSGVLLWHYGFTQYQYYTVLFGVSRAVGALSQLYWDRALGLPLERPKSVTPEWLWSQVQ 465

[Close]

BLAST of EWM27549.1 vs. NCBI_GenBank
Match: gi|1210514856|dbj|GAX26335.1| (citrate synthase [Fistulifera solaris])

HSP 1 Score: 648.277 bits (1671), Expect = 0.000e+0
Identity = 316/463 (68.25%), Postives = 368/463 (79.48%), Query Frame = 0

Query:    1 MITHMSRRL-RNTVAPSMKSLATRGMASIQETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSKDPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWILEHVN 462
            MI+  +  L R T+  S    + R + ++QETL   VP KQA+L  LKKEHG  VIG+VT+DQCIGG R +K + WETS LDA+EGIRFRG +IPE Q  LPT+ G  G GEP  E+L WL+LT  +PTK +ADSLT EL+ RS +P HVV LL SLPK +HPM+QL +GLMA Q +SKF+ AYA GV KKEY  H LEDIL V A+LPE+AA ++ N Y DG V +KD SLDYS NF R LGY+ P FDELMRLYL IH+DHEGGNASAH THLVGSTLSDPYLSYS GLNALAGPLHGLANQEVL WI +L+ KF AEGK VN E+IT+FAWETLK+GKVIPGYGHAVLRKTDPRYT QREFALK++PDD LFK+V TIY+V+P +L EHGK  NPYPNVDSHSGVLLWHYGF ++ YYTVLFGVSRA+GALSQ++WDRALG+PLERPKSVT +W+   V 
Sbjct:    4 MISKSASALSRKTLTSSFAKTSVRSITTLQETLAAQVPEKQAKLTQLKKEHGSHVIGNVTIDQCIGGARSVKCMLWETSNLDAEEGIRFRGLTIPECQAVLPTYSGKTGDGEPLLESLFWLLLTGEVPTKEQADSLTAELHARSTLPAHVVPLLNSLPKQMHPMTQLSIGLMAAQTESKFSKAYADGVPKKEYHLHALEDILSVVAQLPEIAATIYRNVYFDGKV-NKDLSLDYSGNFCRMLGYDDPSFDELMRLYLCIHTDHEGGNASAHATHLVGSTLSDPYLSYSGGLNALAGPLHGLANQEVLKWIQELKSKFDAEGKEVNAESITEFAWETLKAGKVIPGYGHAVLRKTDPRYTCQREFALKHIPDDPLFKLVDTIYQVMPGILKEHGKVANPYPNVDSHSGVLLWHYGFTQYQYYTVLFGVSRAVGALSQLYWDRALGLPLERPKSVTPEWLWSQVQ 465

[Close]

BLAST of EWM27549.1 vs. NCBI_GenBank
Match: gi|1173926650|gb|OQR80830.1| (citrate synthase, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 647.892 bits (1670), Expect = 0.000e+0
Identity = 304/453 (67.11%), Postives = 367/453 (81.02%), Query Frame = 0

Query:    9 LRNTVAPSMKSLATRGMASIQETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSK-DPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWILEH 460
            LR   A +     +   +S+ E L E VP +Q  L  LK EHG+K++G+VTVDQC+GG RD+K + WETSLLDA+EGIRFRGY+IPELQ+ LPT       GEP PE L+WL+LT  IP+KA+ADSLT E + RS++P HV A+L  LPK++HPM+Q  + +MA+Q DS FA  Y  G+HK  YW HT +D+L+V A++PE+AA ++ N+Y D  +  + D S+DY+ANFAR LGYN P FDELMRLYLVIHSDHEGGNASAHTTHLVGSTL+DPYLS +AGLNALAGPLHGLANQEVLGWI+DL ++FK++   VNKETITQFAW+TL SGKVIPGYGHAVLRKTDPRY+ QREFALK++P+D LFKIV TIY+V+P VLTEHGKTKNPYPNVDSHSGVLL HYG  + NYYTVLFGVSRA+G LSQ+FWDRALG+PLERPKSVTS+WI+ H
Sbjct:    8 LRRAAAKTSTKAFSTSTSSLFEVLKEQVPARQEALKKLKAEHGNKILGEVTVDQCLGGARDVKCMLWETSLLDAEEGIRFRGYTIPELQKLLPT---AVEGGEPLPEGLIWLLLTGEIPSKAQADSLTAEFHARSKLPDHVKAVLCDLPKNMHPMTQFSIAIMAMQTDSIFARKYQEGIHKSTYWHHTYDDMLNVIARIPEIAATIYRNSYFDECLDMQYDSSVDYAANFARLLGYNDPHFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLADPYLSVAAGLNALAGPLHGLANQEVLGWIMDLDEEFKSKNLDVNKETITQFAWDTLNSGKVIPGYGHAVLRKTDPRYSCQREFALKHMPEDRLFKIVETIYQVMPGVLTEHGKTKNPYPNVDSHSGVLLHHYGLTQKNYYTVLFGVSRAMGVLSQLFWDRALGLPLERPKSVTSEWIVNH 457

[Close]

BLAST of EWM27549.1 vs. NCBI_GenBank
Match: gi|673044927|ref|XP_008876424.1| (citrate (Si)-synthase, eukaryotic [Aphanomyces invadans] >gi|574467812|gb|ETV94833.1| citrate (Si)-synthase, eukaryotic [Aphanomyces invadans])

HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0
Identity = 305/464 (65.73%), Postives = 375/464 (80.82%), Query Frame = 0

Query:    5 MSRRLRNTVAPSM--KSLATRGMASIQETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSK-DPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWILEHVNNSK 465
            + R + + VAPS+  K+L +    S+ + L E +P +Q  L  LK EHG+K +G+VTVDQCIGG RD+K + WETSLLD++EGIRFRG++IP+LQ+KLPT+      GEP PE L+WL+LT  IPT+ + DSLT EL+ RS+IP HV  +L  LPK  HPM+Q  + +MA+  +S F   YA G+HK  YW+HT ED+L++ A++PE+AA ++ +TY D  +  K D SLDYSANFAR LGY+  +FDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLS +AGLNALAGPLHGLANQEVLGWI+DL  +FK++  PVNKETIT+FAW+TLK+GKVIPGYGHAVLRKTDPRY+ QREFALK++P+DELF+IV TIY+V+P +LTEHGKTKNPYPNVDSHSGVLL+HYG  + NYYTVLFGVSRA+G LSQ+FWDRALG+PLERPKSVTS+WI EH    K
Sbjct:    6 LRRVVSSKVAPSVTSKALFSSSSTSLYDVLKEQIPRRQEALKKLKAEHGNKSLGNVTVDQCIGGARDVKCMLWETSLLDSEEGIRFRGHTIPDLQKKLPTY---IEGGEPMPEGLIWLLLTGDIPTREQVDSLTKELHARSKIPAHVKQMLCDLPKGTHPMTQFSIAVMAMNTESVFQKKYAEGIHKSTYWEHTYEDMLNLIARIPEVAATIYRSTYFDECLDIKYDSSLDYSANFARMLGYDSQDFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSVAAGLNALAGPLHGLANQEVLGWIMDLHDEFKSKNLPVNKETITKFAWDTLKAGKVIPGYGHAVLRKTDPRYSCQREFALKHMPNDELFQIVETIYQVMPGILTEHGKTKNPYPNVDSHSGVLLYHYGLTQKNYYTVLFGVSRAMGVLSQLFWDRALGLPLERPKSVTSEWINEHFRKHK 466

[Close]

BLAST of EWM27549.1 vs. NCBI_GenBank
Match: gi|1173943371|gb|OQR92232.1| (citrate synthase, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 644.04 bits (1660), Expect = 0.000e+0
Identity = 301/453 (66.45%), Postives = 369/453 (81.46%), Query Frame = 0

Query:    9 LRNTVAPSMKSLATRGMASIQETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSK-DPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWILEH 460
            LR   A +     +   +S+ E L E VP++Q  +  LK EHG+KV+G+VTV+QC+GG RD+K + WETSLLDA+EGIRFRG++IPELQ+KLPT       GEP PE L+WL+LT  IPTKA+ADSLT E + RS++P HV A+L  LPK++HPM+Q  + +MA+Q DS FA  Y  G+HK  YW +  ED+L+V A++PE+AA ++ N+Y D  +    D S+DY+ANFAR LGYN P FDELMRLYLVIHSDHEGGNASAHTTHLVGSTL+DPYLS +AGLNALAGPLHGLANQEVLGWI+DL ++FK++G  VN+ETIT+FAW+TL +GKVIPGYGHAVLRKTDPRY+SQREFALK++PDD LFKIV TIY+V+P +LT+HGKTKNPYPNVDSHSGVLL HYG  + NYYTVLFGVSRA+G LSQ+FWDRALG+PLERPKSVTS+WI+ H
Sbjct:    8 LRRAAAKTSTKAFSSSTSSLFEVLKEQVPLRQEAMKKLKAEHGNKVLGEVTVEQCLGGARDVKCMLWETSLLDAEEGIRFRGFTIPELQKKLPT---AVEGGEPLPEGLIWLLLTGEIPTKAQADSLTAEFHARSKLPDHVKAVLCDLPKNMHPMTQFSIAIMAMQTDSIFAHKYQEGIHKSTYWHYLYEDMLNVIARIPEIAATIYRNSYFDECLDMHYDSSVDYAANFARLLGYNDPHFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLADPYLSVAAGLNALAGPLHGLANQEVLGWIMDLDEEFKSKGLEVNEETITKFAWDTLNAGKVIPGYGHAVLRKTDPRYSSQREFALKHMPDDRLFKIVETIYQVMPGILTQHGKTKNPYPNVDSHSGVLLHHYGLTQKNYYTVLFGVSRAMGVLSQLFWDRALGLPLERPKSVTSEWIVNH 457

[Close]

BLAST of EWM27549.1 vs. NCBI_GenBank
Match: gi|1072235126|gb|OEU19855.1| (citrate synthase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 639.032 bits (1647), Expect = 0.000e+0
Identity = 297/433 (68.59%), Postives = 352/433 (81.29%), Query Frame = 0

Query:   29 QETLTELVPVKQAELVALKKEHGHKVIGDVTVDQCIGGGRDIKSLFWETSLLDAQEGIRFRGYSIPELQQKLPTFKGPAGQGEPTPEALVWLMLTDTIPTKAEADSLTHELYKRSEIPQHVVALLKSLPKSLHPMSQLVVGLMALQKDSKFAAAYASGVHKKEYWKHTLEDILDVWAKLPELAALVFSNTYKDGSVGSKDPSLDYSANFARRLGYNKPEFDELMRLYLVIHSDHEGGNASAHTTHLVGSTLSDPYLSYSAGLNALAGPLHGLANQEVLGWILDLQKKFKAEGKPVNKETITQFAWETLKSGKVIPGYGHAVLRKTDPRYTSQREFALKYLPDDELFKIVGTIYEVVPDVLTEHGKTKNPYPNVDSHSGVLLWHYGFKEFNYYTVLFGVSRALGALSQVFWDRALGMPLERPKSVTSKWILEHV 461
            +ETL   VP KQ  L+ALKKEHG  VIG+VT+DQCIGG R +K + WETS LD +EGIRFRG +IPE Q  LPT+ G  G GEP  E+++WL+LT  +PTK + DSLT +L+ R+E+P+HV  L+ SLPK +HPM+QL++GL A Q +S+FA AYA G  K +Y  H LEDIL V A LPE+AA+++ N Y DG V +KD SLDYS NF R LGY+ P FDELMRLYL IH+DHEGGNASAH THLVGSTLSDP+L+YS GLNALAGPLHGLANQEVL WI DL+ KF+AEGKPVN +TIT+FAWETL + KVIPGYGHAVLRKTDPRYT QREFALK++PDDELF +V TIY V+PD+L EHGK  NPYPNVDSHSGVLLWHYGF +F YYTVLFGVSR++GALSQ++WDRALG+PLERPKSVT +W+   V
Sbjct:   15 KETLAAQVPEKQKSLLALKKEHGDHVIGNVTIDQCIGGARSVKCMVWETSNLDPEEGIRFRGLTIPECQAVLPTYSGVTGDGEPMLESILWLLLTSEVPTKEQVDSLTADLHARAELPEHVKTLVNSLPKDMHPMTQLIIGLNACQTESQFAKAYADGAPKTDYHIHALEDILKVVAVLPEIAAMIYRNVYFDGIV-TKDTSLDYSGNFCRMLGYDDPSFDELMRLYLCIHTDHEGGNASAHATHLVGSTLSDPFLAYSGGLNALAGPLHGLANQEVLKWIQDLKNKFEAEGKPVNADTITEFAWETLNAKKVIPGYGHAVLRKTDPRYTCQREFALKHMPDDELFNVVDTIYSVMPDILKEHGKVANPYPNVDSHSGVLLWHYGFTQFQYYTVLFGVSRSVGALSQLYWDRALGLPLERPKSVTPEWLWSQV 446

The following BLAST results are available for this feature:

BLAST of EWM27549.1 vs. NCBI_GenBank

BLAST of EWM27549.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585109816\|gb\|EWM27549.1\|	0.000e+0	100.00	citrate synthase [Nannochloropsis gaditana]	[more]
gi\|676389299\|ref\|XP_009037928.1\|	0.000e+0	70.98	hypothetical protein AURANDRAFT_37826 [Aureococcus...	[more]
gi\|669165126\|ref\|XP_008618125.1\|	0.000e+0	68.00	citrate synthase [Saprolegnia diclina VS20] >gi\|53...	[more]
gi\|813189056\|ref\|XP_012207518.1\|	0.000e+0	67.78	citrate (Si)-synthase [Saprolegnia parasitica CBS ...	[more]
gi\|1210511572\|dbj\|GAX29386.1\|	0.000e+0	68.25	citrate synthase [Fistulifera solaris]	[more]
gi\|1210514856\|dbj\|GAX26335.1\|	0.000e+0	68.25	citrate synthase [Fistulifera solaris]	[more]
gi\|1173926650\|gb\|OQR80830.1\|	0.000e+0	67.11	citrate synthase, mitochondrial precursor [Achlya ...	[more]
gi\|673044927\|ref\|XP_008876424.1\|	0.000e+0	65.73	citrate (Si)-synthase, eukaryotic [Aphanomyces inv...	[more]
gi\|1173943371\|gb\|OQR92232.1\|	0.000e+0	66.45	citrate synthase, mitochondrial precursor [Thraust...	[more]
gi\|1072235126\|gb\|OEU19855.1\|	0.000e+0	68.59	citrate synthase [Fragilariopsis cylindrus CCMP110...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3143	rna3143	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications