rna3140, rna3140 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3140
Unique Name	rna3140
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2220
Alignment location	CM002460.1:826885..828279 -

Link to JBrowse

Properties


Property Name	Value
Product	two-component response regulator arr12
Orig transcript id	gnl\|cribi\|Naga_100015g18.6390.mrna
Orig protein id	gnl\|cribi\|Naga_100015g18.6390
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:826885..828279 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g18	gene3018	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27574.1	cds3132	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3140	rna3140-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:826885..828279-
coding sequence from alignment at CM002460.1:826885..828279-

mRNA sequence

>rna3140 ID=rna3140|Name=rna3140|organism=Nannochloropsis gaditana|type=mRNA|length=2220bp
ATGCGACACGCGATCCTCAAGGTATCTTTTATTGATCGCCGCTTGATGTC
ATTTGAGGCAGATCCTACGGGACGAGTCAACATGCACCATCATGCCTTCA
ATTATCAGGTCTTCCTGCCGCTATTCTTCCTTTTTCAGGTCCACACCTAC
AGTAGTGCCTTTCAATATGCCGGTCCAGCATCTTGGCAGTCGCAACTTCC
ATTCACAAGATGTATGCCTTTTTTTCCATTGCTGGCCATGAACACGTTGT
CAGCTGATTCGAAGCCTACGACTGTCTCTCCCCCGATGTCCGAACAGTTT
CAAGAAGGGCATCGCAAGTCGTGGCGGCGGCTGGGCAGCTTTGAGACCCT
GTTGGCACGTAAAGCGGCAGCAGGCCCCCAGCGTCTGTCTATTCCGCATG
TTTGTGCAGCGGTAGTGGATGATAGGAAGGATTTATTGGAACCTCACCTC
GTGAAGCGGGCACTGTCCGCATTGGTCCAGCGTCATCCGAAGCTGCGAGC
GTGTATACGAGGCACGAGGAAGATTGATGGAGCGCCTATAAAGGGAGTTC
GGCGTGGAGGAAAAGAAGTAGACCCGTTGGCGTGGTGGCCGTGTGCCATG
ACCGACGGTGAGGTCGTGAACAATGCCTTATCGTACGTCGATGTTCCCAC
GGGCGGCGACGCAGTAGATGTTTCCCTCCAGCCCAGCGGCTCGCACCCCC
CGCCCTTCGAGTGGGAGGACGATCGTTTCTTTTTCGCCCACCACTTCCAA
CGCGCCCTGGACGAAACGGACATGGACACAAGCCGGGGGCCCTTGTGGCG
GCTGAAAGTCTTACGCCCTATGGGGGCGCGGAGGGAGGGCCGGATCGCCT
TGCTCTTCCTCTTCAACCACGCCATCAGCGATCAGACGTCCTGCAACACC
CTCATTCACGAGCTCCTTGACACGGTTGAGCACATCCACTCATCGTGCCT
GGACCGTCAGCCAACTCCCGGGAGGCCGGCTCCCTTCGTCATCCCCCAGG
CCTTCCCCCCTTCCATTGAAGAGGCTGTGCTTGGTCCCACGCGAGGGACT
TTGAGTCTCACCACTCTCCTCTACGCTGCCCGTGAAGCTCTCTTTGGCAT
CTTGCCCACCACGCTCTTTCCCCGCTTTCCTCCGCCCTCGTACACACCAC
GGCCGACGGCGGATCCAGAAGGGCCACCGGAGAGACCTCCCCCGTTTCTC
CCTGCGGCCACACGGAGGACGATATGCGAATTCCGTACCTTGGACTCGGA
CTCCTTGTCGATGCTGAGGGCCGCCTGCAAGTCACGCGGCGTCACGGTCA
CTGCCGCTCTCTGCGCCGCCATGTTGTATGCGACGAGCGACTTTGCTCAC
GGCCAGGACGGGGGGGGAGGAAGACCTGAGAGGGGCCACAAGCAGCAGAA
GGGCAGAGAGGGGGCGTATCACAACTATCGCTTGTTGCTATCGCTGAATA
TGCGGGCTTTTGGGCGAAGCAGGAAGGACGAGGGAAGGGAGGGAGGCGGA
GAGGAAGAGAAGATGTGGGCCGAACATGCGGTTGCCTCCGCGGCCGGGGC
GATGGATTTCATGGTTCGTTTGCCGGAACAACGGGGTTCGACCCTATCCT
TGCGCCCGAAGCGAACAGGTGGGTCAGAAGAAGCTAACGACGGTACGGAG
GATGGTGTTTGGGAGGGAAAAAGAGATTTTTGGGCGTTGACGAAACGGTG
TCGGAGGGAGCTTGTGGATTTTATCGAGGCAGGGTTCGTGGCCGAGTCGG
TCCAGCTCTTTGACTGGGGCATGCAGACGATAGAACTGAACGACGTGGTA
GAGAAGGAGGCGGAGAACCCGCAAACCTTCGGGCGTGCCTACACCTGCGG
CGTGTCCAATATGGGAATCTTCGACGGGACCGGCCGGTCACGTGTCCTGG
CAGAGGGCCCAAACAGCGACGGTAGTGCTAGCGTGCATGCAAGGTGCCAA
AATGGGGAAGACAGAGAAAGTGGTGAGCGCATGCGCGTCATAGAGGCATC
TACGCCGTCTGCTGTCCCTACTGCTGCCTATGGACCGATGCGTCTGCGCG
GCATCTACTACGCGACCAGCCACAGCCTGACTGGGAGTTTGTACCAGCTT
TCGTGTGGGACCGTGGACGGGGCTTTGTGTTTGACATTCCATTTCCCCTG
GCCGCTGGTTCCTCGAAGCATGGCCCGATGCTTTGCCAACCGCGTCCTGC
AGATTTTGCAATGCGTGTGA

protein sequence of rna3140

>rna3140-protein ID=rna3140-protein|Name=rna3140|organism=Nannochloropsis gaditana|type=polypeptide|length=464bp
MDELMTGSKRRRHASSARHQQLNHLADGTEGGAGPHQYRGASENASVTSE
SSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHI
KSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTGLVCAKGEAGGVSRDG
SASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQA
LMQQTQLQQQLQAHLQALGFDGPSARMAAAAGAREALGSAAVPSSPSAGP
LSIPVTAEGKAGGSDEAQYHYQYEGHSQGQPHSPAQAHVNQQQQAQVRRP
NTGSGGHMSLPGGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDG
AKMAAAAAAAVQGLSGGPVSGAGLPASYLGVSGGGGNGMAHPGMTENVPV
APHLPASASVASSGMGLAGPTPVAPGGMITGGHPGLDLEVDLASFRWNED
EDNLFSFLMDHPVG

mRNA from alignment at CM002460.1:826885..828279-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3140 ID=rna3140|Name=rna3140|organism=Nannochloropsis gaditana|type=mRNA|length=1395bp|location=Sequence derived from alignment at CM002460.1:826885..828279- (Nannochloropsis gaditana)
ATGGACGAGTTGATGACAGGCAGCAAAAGACGACGGCATGCTTCTTCAGC
GCGACATCAGCAACTTAATCATCTAGCGGATGGGACAGAGGGAGGGGCGG
GCCCCCACCAATACAGGGGGGCTTCCGAGAACGCCTCTGTGACGTCCGAA
AGCAGCAAAGCGAAGAAGCGCTTCGTGTGGCCTGACGACTTGCACCGGGA
CTTCGTAGCCGCCATCTTCGACGTGGGCCTGAAATGTGCTTCTCCCAAGA
CGATCATGGAAATGATGAGCAACACGAAAGAGTTAACCCCGGATCACATT
AAGAGCCACTTGCAAAAGTATCGCTTGCACAGGGAGCGAGCGCGAGAGGA
ATTTTTGCAGCACTTCGGAAAGAACCCTTTCGTCGCAGGGGCAGCAGGGA
CAGGACTCGTGTGTGCGAAGGGCGAAGCGGGGGGGGTATCGAGGGACGGC
TCCGCGTCCTCCTTGGATAGCGTGAACGGCATCGGTGGAAGGGCGGAAAT
GGACCACCAGGGCGACGAAGACGCGTTCCGAGGACAATTGAACCTCATCC
GAGATTGTATACAAATGCAAGCCGGCTTCCAATCCGTTCTCCGTCAAGCC
TTGATGCAGCAGACTCAATTACAGCAGCAGCTACAGGCCCATCTACAAGC
TTTGGGTTTTGACGGACCGTCCGCCCGAATGGCCGCCGCAGCGGGAGCGC
GGGAGGCGTTGGGAAGCGCGGCGGTGCCGTCATCCCCCTCTGCAGGGCCT
CTGTCGATACCGGTGACGGCGGAAGGGAAGGCGGGCGGCAGCGACGAGGC
TCAGTACCACTATCAATACGAAGGGCACTCCCAGGGGCAGCCGCACTCGC
CTGCGCAGGCTCACGTTAACCAACAGCAGCAGGCGCAAGTGAGGCGCCCG
AACACTGGGAGCGGAGGACACATGTCGCTCCCAGGCGGTGGGAAACGGTC
GGCAGAGGAGCTGATGCAGGAGGAAATGCGCGAGCATATGGACATGCACC
GGCAGTTGGTGCTGCGAAAAAATGCGCAAATATCGCAGTACGAGGACGGG
GCAAAAATGGCGGCAGCGGCAGCGGCAGCCGTCCAAGGATTGTCGGGGGG
ACCGGTGTCTGGCGCTGGGCTACCCGCGTCGTACTTGGGCGTTTCTGGGG
GCGGTGGCAACGGTATGGCCCATCCAGGGATGACGGAAAACGTCCCTGTC
GCCCCCCACCTTCCCGCTAGCGCCAGCGTGGCCTCTTCAGGCATGGGGCT
TGCTGGTCCGACACCTGTGGCGCCGGGGGGAATGATCACGGGAGGACATC
CTGGCTTGGACCTGGAAGTAGATCTAGCCTCCTTCCGGTGGAACGAGGAC
GAGGATAACCTGTTTAGTTTTTTGATGGACCATCCCGTGGGATGA

Coding sequence (CDS) from alignment at CM002460.1:826885..828279-

>rna3140 ID=rna3140|Name=rna3140|organism=Nannochloropsis gaditana|type=CDS|length=1395bp|location=Sequence derived from alignment at CM002460.1:826885..828279- (Nannochloropsis gaditana)
ATGGACGAGTTGATGACAGGCAGCAAAAGACGACGGCATGCTTCTTCAGC
GCGACATCAGCAACTTAATCATCTAGCGGATGGGACAGAGGGAGGGGCGG
GCCCCCACCAATACAGGGGGGCTTCCGAGAACGCCTCTGTGACGTCCGAA
AGCAGCAAAGCGAAGAAGCGCTTCGTGTGGCCTGACGACTTGCACCGGGA
CTTCGTAGCCGCCATCTTCGACGTGGGCCTGAAATGTGCTTCTCCCAAGA
CGATCATGGAAATGATGAGCAACACGAAAGAGTTAACCCCGGATCACATT
AAGAGCCACTTGCAAAAGTATCGCTTGCACAGGGAGCGAGCGCGAGAGGA
ATTTTTGCAGCACTTCGGAAAGAACCCTTTCGTCGCAGGGGCAGCAGGGA
CAGGACTCGTGTGTGCGAAGGGCGAAGCGGGGGGGGTATCGAGGGACGGC
TCCGCGTCCTCCTTGGATAGCGTGAACGGCATCGGTGGAAGGGCGGAAAT
GGACCACCAGGGCGACGAAGACGCGTTCCGAGGACAATTGAACCTCATCC
GAGATTGTATACAAATGCAAGCCGGCTTCCAATCCGTTCTCCGTCAAGCC
TTGATGCAGCAGACTCAATTACAGCAGCAGCTACAGGCCCATCTACAAGC
TTTGGGTTTTGACGGACCGTCCGCCCGAATGGCCGCCGCAGCGGGAGCGC
GGGAGGCGTTGGGAAGCGCGGCGGTGCCGTCATCCCCCTCTGCAGGGCCT
CTGTCGATACCGGTGACGGCGGAAGGGAAGGCGGGCGGCAGCGACGAGGC
TCAGTACCACTATCAATACGAAGGGCACTCCCAGGGGCAGCCGCACTCGC
CTGCGCAGGCTCACGTTAACCAACAGCAGCAGGCGCAAGTGAGGCGCCCG
AACACTGGGAGCGGAGGACACATGTCGCTCCCAGGCGGTGGGAAACGGTC
GGCAGAGGAGCTGATGCAGGAGGAAATGCGCGAGCATATGGACATGCACC
GGCAGTTGGTGCTGCGAAAAAATGCGCAAATATCGCAGTACGAGGACGGG
GCAAAAATGGCGGCAGCGGCAGCGGCAGCCGTCCAAGGATTGTCGGGGGG
ACCGGTGTCTGGCGCTGGGCTACCCGCGTCGTACTTGGGCGTTTCTGGGG
GCGGTGGCAACGGTATGGCCCATCCAGGGATGACGGAAAACGTCCCTGTC
GCCCCCCACCTTCCCGCTAGCGCCAGCGTGGCCTCTTCAGGCATGGGGCT
TGCTGGTCCGACACCTGTGGCGCCGGGGGGAATGATCACGGGAGGACATC
CTGGCTTGGACCTGGAAGTAGATCTAGCCTCCTTCCGGTGGAACGAGGAC
GAGGATAACCTGTTTAGTTTTTTGATGGACCATCCCGTGGGATGA

Synonyms

Publications