EWM27574.1, cds3132 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|585109841|gb|EWM27574.1| (two-component response regulator arr12 [Nannochloropsis gaditana]) HSP 1 Score: 945.651 bits (2443), Expect = 0.000e+0 Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 0 Query: 1 MDELMTGSKRRRHASSARHQQLNHLADGTEGGAGPHQYRGASENASVTSESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTGLVCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPSARMAAAAGAREALGSAAVPSSPSAGPLSIPVTAEGKAGGSDEAQYHYQYEGHSQGQPHSPAQAHVNQQQQAQVRRPNTGSGGHMSLPGGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKMAAAAAAAVQGLSGGPVSGAGLPASYLGVSGGGGNGMAHPGMTENVPVAPHLPASASVASSGMGLAGPTPVAPGGMITGGHPGLDLEVDLASFRWNEDEDNLFSFLMDHPVG 464 MDELMTGSKRRRHASSARHQQLNHLADGTEGGAGPHQYRGASENASVTSESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTGLVCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPSARMAAAAGAREALGSAAVPSSPSAGPLSIPVTAEGKAGGSDEAQYHYQYEGHSQGQPHSPAQAHVNQQQQAQVRRPNTGSGGHMSLPGGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKMAAAAAAAVQGLSGGPVSGAGLPASYLGVSGGGGNGMAHPGMTENVPVAPHLPASASVASSGMGLAGPTPVAPGGMITGGHPGLDLEVDLASFRWNEDEDNLFSFLMDHPVG Sbjct: 1 MDELMTGSKRRRHASSARHQQLNHLADGTEGGAGPHQYRGASENASVTSESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTGLVCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPSARMAAAAGAREALGSAAVPSSPSAGPLSIPVTAEGKAGGSDEAQYHYQYEGHSQGQPHSPAQAHVNQQQQAQVRRPNTGSGGHMSLPGGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKMAAAAAAAVQGLSGGPVSGAGLPASYLGVSGGGGNGMAHPGMTENVPVAPHLPASASVASSGMGLAGPTPVAPGGMITGGHPGLDLEVDLASFRWNEDEDNLFSFLMDHPVG 464
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|1173927743|gb|OQR81572.1| (hypothetical protein THRCLA_11609 [Thraustotheca clavata]) HSP 1 Score: 124.02 bits (310), Expect = 3.077e-27 Identity = 129/450 (28.67%), Postives = 198/450 (44.00%), Query Frame = 0 Query: 56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKE---LTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTGLVCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDED-------------------AFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFD---GPSARMAAAAGAREALGSAAVPSSPSAGPLSIPVTAEGKAGGSDEAQYHYQYEGHSQ----GQPHSPAQAHVNQQQQAQVR-RPNTGS-GGHMSLPGGGKRSAEELMQEEMRE--HMD----------MHRQLVLRKNAQISQYEDGAKMAAAAAAAVQGLSGGPVSGAGLPASYLGVSGGGGNGMAHPGMTENVPVAPHLPAS-ASVASSGMGLAGPT-PVAPG--GMITGGHPGLDLEVDLASFRWNEDEDNLFSFL 458 KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M N LT +H+KSHLQKYRL+ +R+R EFL+ F ++ VA +A A+ G + GS S+L + + + G++D QL++ + MQA FQ ++Q L +Q LQ+QLQ L + +A AA A +R + +P P++ + T + S Q+ + SQ P+ Q ++ QQ+ P T S ++ SA M E + H+ +HRQ++LRK ++SQ + + +Q + + PAS P +T + P A P VAS + +A + P +P M G L+L+VD+ D+LFSFL Sbjct: 65 KRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGNPATSSGLTTEHLKSHLQKYRLNYDRSRVEFLKFFDES--VAESAK-----AQKRKGKNVQQGSISALFPICPTSKKRKTSDDGEDDGSSEDEEDEKVAKVVATTQNITRQLDVQAKTLHMQAQFQEEIQQQLYEQALLQRQLQERLSQVTMAKGITENALNAARAASRNT-SNTHLPPHPTSQHKPVNTTNHRQQPTSSTNQFQHHLTALSQLGPSADPNDNLQWNLGLLQQSSAHSSPFTVSPSSRVASNSTVAPSAAPTMSLEQQNASHLQMQMAMQQQMYLHRQMLLRK-VEVSQQQ------GLNSQLIQDQPSWNSNASAAPAS-------------RPPLTIDPPAAEWTPEEPPKVASPSLQMADVSKPASPSTDDMDLYGWDKLNLDVDM--------NDDLFSFL 478
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|1173934679|gb|OQR85936.1| (hypothetical protein ACHHYP_11163, partial [Achlya hypogyna]) HSP 1 Score: 122.865 bits (307), Expect = 1.345e-26 Identity = 131/480 (27.29%), Postives = 202/480 (42.08%), Query Frame = 0 Query: 23 NHLADGTEGGAGPHQYRGASENASVTSESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMM---SNTKELTPDHIKSHLQKYRLHRERAREEFL------------QHFGKNPFVAGAAGTGL--VCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPSARMAAAAGARE--------ALGSAAVPSSPSAGPLSIPVTAEGK--AGGSDEAQYHYQYEGHSQGQPH-SPAQAHVNQQQQAQVRRPNTGSGGHMSLPGGGKRSAEELMQEEMREHMD----------MHRQLVLRKNAQISQYEDGAKMAAAAAAAVQGLSGGPVSGAGLPASYLGVSGGGGNGMAHPGMTENVPVAPHLP---ASASVASSGMGLAGPT-PVAPGG--MITGGHPGLDLEVDLASFRWNEDEDNLFSFL 458 N ++ E + P G++++AS + + KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M + + LT +H+KSHLQKYRL+ +R+R EFL QH K V A + L +C + S D A++ QL++ + MQA FQ ++Q L +Q LQ+QLQ L +++ A G E A ++ +PS+ P+S + A + Q+ + SQ P P A N Q + +P + G + G +A L Q+ H+ +HRQ++LRK ++SQ + G + A S P S P + + A P + V++ G+ L + P P G M G L+L+VD+ D+LFSFL Sbjct: 86 NEPSESAESDSTPTPVNGSTQSAS-GRKYERRTKRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGSSACSSGLTTEHLKSHLQKYRLNYDRSRVEFLKFYDESVSEAAKQHKRKGKVVQQGAVSSLFPICPTSKKRKTSDDAVDDGSSDDEEDEKVAKV--VATTQNITRQLDVQAKTLHMQAQFQEEIQQQLYEQALLQRQLQERL---------SQVTMAKGITESALNAARSAAARSSTAPAPSSNPVSKATAPSHRHHAPSPHQNQFSHHLAALSQLGPSGDPGSAENNMQWNLGLLQPASSHGSPFPVSPRGPTAAMSLEQQNA-SHLQMQMAMQQQMYLHRQMLLRK-VEVSQQQPGL-LPQETATWNSNASAAPAS--------------------RPTLDQQAAAAEQWPPDDVQSKVSTPGLPLPDESKPATPSGDVMDLYGWDKLNLDVDM--------NDDLFSFL 522
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|673036772|ref|XP_008872347.1| (hypothetical protein H310_08408 [Aphanomyces invadans] >gi|574471913|gb|ETV98919.1| hypothetical protein H310_08408 [Aphanomyces invadans]) HSP 1 Score: 113.62 bits (283), Expect = 1.834e-23 Identity = 67/182 (36.81%), Postives = 100/182 (54.95%), Query Frame = 0 Query: 56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSN---TKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTGLVCAKGEAGGVSRDGSASSLDSVNGIGGRA--EMDHQGDED-----------------AFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHL 215 KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M N LT +H+KSHLQKYRL+ +R+R EFL++F + + + + G V G+ +SL + R+ +M+ +D + QL++ ++MQA FQ ++Q L +Q LQ+QLQ L Sbjct: 72 KRFIWPDELHRLFVAAVFDVGLKNASPKALLALMGNPACMNGLTTEHLKSHLQKYRLNYDRSRVEFLKYFDE-------SVSESTKQQKRKGRVVPQGAVASLFPIMPKRKRSLDDMEEASSDDDDVHPDEKVAKVVAAASSISRQLDVQSKTLKMQAQFQEEIQQQLYEQALLQRQLQERL 246
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|669158040|ref|XP_008614582.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530733938|gb|EQC32180.1| hypothetical protein, variant [Saprolegnia diclina VS20]) HSP 1 Score: 111.694 bits (278), Expect = 6.725e-23 Identity = 67/176 (38.07%), Postives = 92/176 (52.27%), Query Frame = 0 Query: 56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSN---TKELTPDHIKSHLQKYRLHRERAREEFL------------QHFGKNPFVAGAAGTGL-VCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHL 215 KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M N + LT +H+KSHLQKYRL+ +R+R EFL QH K V GA + +C + + D A++ QL++ + MQA FQ ++Q L +Q LQ+QLQ L Sbjct: 73 KRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGNPACSNGLTTEHLKSHLQKYRLNYDRSRVEFLKFYDESVSEATKQHKRKGKPVQGAVSSLFPICPTSKKRKTTDDAMEDPSSDDEDDEKVAKV--VATTQNITRQLDVQAKTLHMQAQFQEEIQQQLYEQALLQRQLQERL 246
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|298706342|emb|CBJ29351.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 112.849 bits (281), Expect = 6.842e-23 Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 0 Query: 49 SESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHF 122 S+ + +++RFVW LH+DFVAA+FDVGLKCASPK ++EMM LT +HIKSHLQKYRLHR+R+REEFL+ + Sbjct: 125 SKHAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 198
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|669158038|ref|XP_008614581.1| (hypothetical protein SDRG_10373 [Saprolegnia diclina VS20] >gi|530733937|gb|EQC32179.1| hypothetical protein SDRG_10373 [Saprolegnia diclina VS20]) HSP 1 Score: 111.309 bits (277), Expect = 1.102e-22 Identity = 64/177 (36.16%), Postives = 93/177 (52.54%), Query Frame = 0 Query: 56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSN---TKELTPDHIKSHLQKYRLHRERAREEFLQHFGKN-------------PFVAGAAGTGL-VCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHL 215 KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M N + LT +H+KSHLQKYRL+ +R+R EFL+ + ++ P GA + +C + + D A++ QL++ + MQA FQ ++Q L +Q LQ+QLQ L Sbjct: 73 KRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGNPACSNGLTTEHLKSHLQKYRLNYDRSRVEFLKFYDESVSEATKQHKRKGKPVQQGAVSSLFPICPTSKKRKTTDDAMEDPSSDDEDDEKVAKV--VATTQNITRQLDVQAKTLHMQAQFQEEIQQQLYEQALLQRQLQERL 247
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|813149677|ref|XP_012200485.1| (hypothetical protein SPRG_19952 [Saprolegnia parasitica CBS 223.65] >gi|641534805|gb|KDO28735.1| hypothetical protein SPRG_19952 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 108.227 bits (269), Expect = 1.009e-21 Identity = 63/177 (35.59%), Postives = 93/177 (52.54%), Query Frame = 0 Query: 56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSN---TKELTPDHIKSHLQKYRLHRERAREEFLQHFGKN-------------PFVAGAAGTGL-VCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHL 215 KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M N + LT H+KSHLQKYRL+ +R+R EFL+++ ++ P GA + +C + + + A++ QL++ + MQA FQ ++Q L +Q LQ+QLQ L Sbjct: 53 KRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGNPACSSGLTTGHLKSHLQKYRLNYDRSRVEFLKYYDESVSEATKQHKRKGKPVQQGAVSSLFPICPTSKKRKTTDEVVEDPSSDDEDDEKVAKV--VATTQNITRQLDVQAKTLHMQAQFQEEIQQQLYEQALLQRQLQERL 227
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|698807756|ref|XP_009836907.1| (hypothetical protein H257_11609 [Aphanomyces astaci] >gi|574107972|gb|ETV73481.1| hypothetical protein H257_11609 [Aphanomyces astaci]) HSP 1 Score: 108.227 bits (269), Expect = 1.163e-21 Identity = 67/181 (37.02%), Postives = 102/181 (56.35%), Query Frame = 0 Query: 56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMM---SNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAG----TGLVCAKGEAGGV-----SRDGSASSLDSVNGIGGRAEMDHQGDE---------DAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHL 215 KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M + T LT +H+KSHLQKYRL+ +R+R EFL+ F ++ V+ + G V +G + R S ++ +G ++ + DE + QL++ +++QA FQ ++Q L +Q LQ+QLQ L Sbjct: 85 KRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGTPACTNGLTTEHLKSHLQKYRLNYDRSRVEFLKFFDES--VSESTKHQKRKGKVMPQGAVTSMFPIMPKRKRSLGDMNEGSGGESSSDGEVHPDEKVAKVVAATSSISRQLDMQSKTLKVQAQFQEEIQQQLYEQAVLQRQLQERL 263
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|953498813|emb|CEG39863.1| (Myb domain, plants [Plasmopara halstedii]) HSP 1 Score: 106.301 bits (264), Expect = 3.381e-21 Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 0 Query: 26 ADGTEGGAGPHQYRGASENASVTSESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKE---LTPDHIKSHLQKYRLHRERAREEFLQHFGKN 125 A T +G + ++AS + + KRFVWPDDLHR FVAAIFDVGLK ASPKT++ +M + LT +H+KSHLQK+RL+ ER+R EFL+++ ++ Sbjct: 66 ATNTSSFSGKQKKTDEDKSASKQRKYERKTKRFVWPDDLHRLFVAAIFDVGLKNASPKTLLTLMEPVEPDAGLTTEHLKSHLQKFRLNYERSRIEFLEYYDRS 168 The following BLAST results are available for this feature:
BLAST of EWM27574.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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