EWM27574.1, cds3132 (CDS) Nannochloropsis gaditana

Overview
NameEWM27574.1
Unique Namecds3132
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:826885..828279 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27574.1
Producttwo-component response regulator arr12
Orig transcript idgnl|cribi|Naga_100015g18.6390.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:826885..828279 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR006447Myb_dom_plants
IPR001005SANT/Myb
IPR009057Homeodomain-like
Homology
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|585109841|gb|EWM27574.1| (two-component response regulator arr12 [Nannochloropsis gaditana])

HSP 1 Score: 945.651 bits (2443), Expect = 0.000e+0
Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 0
Query:    1 MDELMTGSKRRRHASSARHQQLNHLADGTEGGAGPHQYRGASENASVTSESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTGLVCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPSARMAAAAGAREALGSAAVPSSPSAGPLSIPVTAEGKAGGSDEAQYHYQYEGHSQGQPHSPAQAHVNQQQQAQVRRPNTGSGGHMSLPGGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKMAAAAAAAVQGLSGGPVSGAGLPASYLGVSGGGGNGMAHPGMTENVPVAPHLPASASVASSGMGLAGPTPVAPGGMITGGHPGLDLEVDLASFRWNEDEDNLFSFLMDHPVG 464
            MDELMTGSKRRRHASSARHQQLNHLADGTEGGAGPHQYRGASENASVTSESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTGLVCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPSARMAAAAGAREALGSAAVPSSPSAGPLSIPVTAEGKAGGSDEAQYHYQYEGHSQGQPHSPAQAHVNQQQQAQVRRPNTGSGGHMSLPGGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKMAAAAAAAVQGLSGGPVSGAGLPASYLGVSGGGGNGMAHPGMTENVPVAPHLPASASVASSGMGLAGPTPVAPGGMITGGHPGLDLEVDLASFRWNEDEDNLFSFLMDHPVG
Sbjct:    1 MDELMTGSKRRRHASSARHQQLNHLADGTEGGAGPHQYRGASENASVTSESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTGLVCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPSARMAAAAGAREALGSAAVPSSPSAGPLSIPVTAEGKAGGSDEAQYHYQYEGHSQGQPHSPAQAHVNQQQQAQVRRPNTGSGGHMSLPGGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKMAAAAAAAVQGLSGGPVSGAGLPASYLGVSGGGGNGMAHPGMTENVPVAPHLPASASVASSGMGLAGPTPVAPGGMITGGHPGLDLEVDLASFRWNEDEDNLFSFLMDHPVG 464          
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|1173927743|gb|OQR81572.1| (hypothetical protein THRCLA_11609 [Thraustotheca clavata])

HSP 1 Score: 124.02 bits (310), Expect = 3.077e-27
Identity = 129/450 (28.67%), Postives = 198/450 (44.00%), Query Frame = 0
Query:   56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKE---LTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTGLVCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDED-------------------AFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFD---GPSARMAAAAGAREALGSAAVPSSPSAGPLSIPVTAEGKAGGSDEAQYHYQYEGHSQ----GQPHSPAQAHVNQQQQAQVR-RPNTGS-GGHMSLPGGGKRSAEELMQEEMRE--HMD----------MHRQLVLRKNAQISQYEDGAKMAAAAAAAVQGLSGGPVSGAGLPASYLGVSGGGGNGMAHPGMTENVPVAPHLPAS-ASVASSGMGLAGPT-PVAPG--GMITGGHPGLDLEVDLASFRWNEDEDNLFSFL 458
            KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M N      LT +H+KSHLQKYRL+ +R+R EFL+ F ++  VA +A      A+   G   + GS S+L  +     + +    G++D                       QL++    + MQA FQ  ++Q L +Q  LQ+QLQ  L  +        +A  AA A +R    +  +P  P++    +  T   +   S   Q+ +     SQ      P+   Q ++   QQ+     P T S    ++       SA   M  E +   H+           +HRQ++LRK  ++SQ +         +  +Q       + +  PAS              P +T + P A   P     VAS  + +A  + P +P    M   G   L+L+VD+         D+LFSFL
Sbjct:   65 KRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGNPATSSGLTTEHLKSHLQKYRLNYDRSRVEFLKFFDES--VAESAK-----AQKRKGKNVQQGSISALFPICPTSKKRKTSDDGEDDGSSEDEEDEKVAKVVATTQNITRQLDVQAKTLHMQAQFQEEIQQQLYEQALLQRQLQERLSQVTMAKGITENALNAARAASRNT-SNTHLPPHPTSQHKPVNTTNHRQQPTSSTNQFQHHLTALSQLGPSADPNDNLQWNLGLLQQSSAHSSPFTVSPSSRVASNSTVAPSAAPTMSLEQQNASHLQMQMAMQQQMYLHRQMLLRK-VEVSQQQ------GLNSQLIQDQPSWNSNASAAPAS-------------RPPLTIDPPAAEWTPEEPPKVASPSLQMADVSKPASPSTDDMDLYGWDKLNLDVDM--------NDDLFSFL 478          
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|1173934679|gb|OQR85936.1| (hypothetical protein ACHHYP_11163, partial [Achlya hypogyna])

HSP 1 Score: 122.865 bits (307), Expect = 1.345e-26
Identity = 131/480 (27.29%), Postives = 202/480 (42.08%), Query Frame = 0
Query:   23 NHLADGTEGGAGPHQYRGASENASVTSESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMM---SNTKELTPDHIKSHLQKYRLHRERAREEFL------------QHFGKNPFVAGAAGTGL--VCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPSARMAAAAGARE--------ALGSAAVPSSPSAGPLSIPVTAEGK--AGGSDEAQYHYQYEGHSQGQPH-SPAQAHVNQQQQAQVRRPNTGSGGHMSLPGGGKRSAEELMQEEMREHMD----------MHRQLVLRKNAQISQYEDGAKMAAAAAAAVQGLSGGPVSGAGLPASYLGVSGGGGNGMAHPGMTENVPVAPHLP---ASASVASSGMGLAGPT-PVAPGG--MITGGHPGLDLEVDLASFRWNEDEDNLFSFL 458
            N  ++  E  + P    G++++AS   +  +  KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M   + +  LT +H+KSHLQKYRL+ +R+R EFL            QH  K   V   A + L  +C   +    S D               A++           QL++    + MQA FQ  ++Q L +Q  LQ+QLQ  L         +++  A G  E        A   ++   +PS+ P+S       +  A    + Q+ +     SQ  P   P  A  N Q    + +P +  G    +   G  +A  L Q+    H+           +HRQ++LRK  ++SQ + G  +    A      S  P S                     P + +    A   P     + V++ G+ L   + P  P G  M   G   L+L+VD+         D+LFSFL
Sbjct:   86 NEPSESAESDSTPTPVNGSTQSAS-GRKYERRTKRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGSSACSSGLTTEHLKSHLQKYRLNYDRSRVEFLKFYDESVSEAAKQHKRKGKVVQQGAVSSLFPICPTSKKRKTSDDAVDDGSSDDEEDEKVAKV--VATTQNITRQLDVQAKTLHMQAQFQEEIQQQLYEQALLQRQLQERL---------SQVTMAKGITESALNAARSAAARSSTAPAPSSNPVSKATAPSHRHHAPSPHQNQFSHHLAALSQLGPSGDPGSAENNMQWNLGLLQPASSHGSPFPVSPRGPTAAMSLEQQNA-SHLQMQMAMQQQMYLHRQMLLRK-VEVSQQQPGL-LPQETATWNSNASAAPAS--------------------RPTLDQQAAAAEQWPPDDVQSKVSTPGLPLPDESKPATPSGDVMDLYGWDKLNLDVDM--------NDDLFSFL 522          
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|673036772|ref|XP_008872347.1| (hypothetical protein H310_08408 [Aphanomyces invadans] >gi|574471913|gb|ETV98919.1| hypothetical protein H310_08408 [Aphanomyces invadans])

HSP 1 Score: 113.62 bits (283), Expect = 1.834e-23
Identity = 67/182 (36.81%), Postives = 100/182 (54.95%), Query Frame = 0
Query:   56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSN---TKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTGLVCAKGEAGGVSRDGSASSLDSVNGIGGRA--EMDHQGDED-----------------AFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHL 215
            KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M N      LT +H+KSHLQKYRL+ +R+R EFL++F +       + +     +   G V   G+ +SL  +     R+  +M+    +D                 +   QL++    ++MQA FQ  ++Q L +Q  LQ+QLQ  L
Sbjct:   72 KRFIWPDELHRLFVAAVFDVGLKNASPKALLALMGNPACMNGLTTEHLKSHLQKYRLNYDRSRVEFLKYFDE-------SVSESTKQQKRKGRVVPQGAVASLFPIMPKRKRSLDDMEEASSDDDDVHPDEKVAKVVAAASSISRQLDVQSKTLKMQAQFQEEIQQQLYEQALLQRQLQERL 246          
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|669158040|ref|XP_008614582.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530733938|gb|EQC32180.1| hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 111.694 bits (278), Expect = 6.725e-23
Identity = 67/176 (38.07%), Postives = 92/176 (52.27%), Query Frame = 0
Query:   56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSN---TKELTPDHIKSHLQKYRLHRERAREEFL------------QHFGKNPFVAGAAGTGL-VCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHL 215
            KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M N   +  LT +H+KSHLQKYRL+ +R+R EFL            QH  K   V GA  +   +C   +    + D               A++           QL++    + MQA FQ  ++Q L +Q  LQ+QLQ  L
Sbjct:   73 KRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGNPACSNGLTTEHLKSHLQKYRLNYDRSRVEFLKFYDESVSEATKQHKRKGKPVQGAVSSLFPICPTSKKRKTTDDAMEDPSSDDEDDEKVAKV--VATTQNITRQLDVQAKTLHMQAQFQEEIQQQLYEQALLQRQLQERL 246          
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|298706342|emb|CBJ29351.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 112.849 bits (281), Expect = 6.842e-23
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 0
Query:   49 SESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHF 122
            S+ + +++RFVW   LH+DFVAA+FDVGLKCASPK ++EMM     LT +HIKSHLQKYRLHR+R+REEFL+ +
Sbjct:  125 SKHAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 198          
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|669158038|ref|XP_008614581.1| (hypothetical protein SDRG_10373 [Saprolegnia diclina VS20] >gi|530733937|gb|EQC32179.1| hypothetical protein SDRG_10373 [Saprolegnia diclina VS20])

HSP 1 Score: 111.309 bits (277), Expect = 1.102e-22
Identity = 64/177 (36.16%), Postives = 93/177 (52.54%), Query Frame = 0
Query:   56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSN---TKELTPDHIKSHLQKYRLHRERAREEFLQHFGKN-------------PFVAGAAGTGL-VCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHL 215
            KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M N   +  LT +H+KSHLQKYRL+ +R+R EFL+ + ++             P   GA  +   +C   +    + D               A++           QL++    + MQA FQ  ++Q L +Q  LQ+QLQ  L
Sbjct:   73 KRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGNPACSNGLTTEHLKSHLQKYRLNYDRSRVEFLKFYDESVSEATKQHKRKGKPVQQGAVSSLFPICPTSKKRKTTDDAMEDPSSDDEDDEKVAKV--VATTQNITRQLDVQAKTLHMQAQFQEEIQQQLYEQALLQRQLQERL 247          
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|813149677|ref|XP_012200485.1| (hypothetical protein SPRG_19952 [Saprolegnia parasitica CBS 223.65] >gi|641534805|gb|KDO28735.1| hypothetical protein SPRG_19952 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 108.227 bits (269), Expect = 1.009e-21
Identity = 63/177 (35.59%), Postives = 93/177 (52.54%), Query Frame = 0
Query:   56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSN---TKELTPDHIKSHLQKYRLHRERAREEFLQHFGKN-------------PFVAGAAGTGL-VCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQGDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHL 215
            KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M N   +  LT  H+KSHLQKYRL+ +R+R EFL+++ ++             P   GA  +   +C   +    + +               A++           QL++    + MQA FQ  ++Q L +Q  LQ+QLQ  L
Sbjct:   53 KRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGNPACSSGLTTGHLKSHLQKYRLNYDRSRVEFLKYYDESVSEATKQHKRKGKPVQQGAVSSLFPICPTSKKRKTTDEVVEDPSSDDEDDEKVAKV--VATTQNITRQLDVQAKTLHMQAQFQEEIQQQLYEQALLQRQLQERL 227          
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|698807756|ref|XP_009836907.1| (hypothetical protein H257_11609 [Aphanomyces astaci] >gi|574107972|gb|ETV73481.1| hypothetical protein H257_11609 [Aphanomyces astaci])

HSP 1 Score: 108.227 bits (269), Expect = 1.163e-21
Identity = 67/181 (37.02%), Postives = 102/181 (56.35%), Query Frame = 0
Query:   56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMM---SNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAG----TGLVCAKGEAGGV-----SRDGSASSLDSVNGIGGRAEMDHQGDE---------DAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHL 215
            KRF+WPD+LHR FVAA+FDVGLK ASPK ++ +M   + T  LT +H+KSHLQKYRL+ +R+R EFL+ F ++  V+ +       G V  +G    +      R  S   ++  +G    ++ +   DE          +   QL++    +++QA FQ  ++Q L +Q  LQ+QLQ  L
Sbjct:   85 KRFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGTPACTNGLTTEHLKSHLQKYRLNYDRSRVEFLKFFDES--VSESTKHQKRKGKVMPQGAVTSMFPIMPKRKRSLGDMNEGSGGESSSDGEVHPDEKVAKVVAATSSISRQLDMQSKTLKVQAQFQEEIQQQLYEQAVLQRQLQERL 263          
BLAST of EWM27574.1 vs. NCBI_GenBank
Match: gi|953498813|emb|CEG39863.1| (Myb domain, plants [Plasmopara halstedii])

HSP 1 Score: 106.301 bits (264), Expect = 3.381e-21
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 0
Query:   26 ADGTEGGAGPHQYRGASENASVTSESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKE---LTPDHIKSHLQKYRLHRERAREEFLQHFGKN 125
            A  T   +G  +     ++AS   +  +  KRFVWPDDLHR FVAAIFDVGLK ASPKT++ +M   +    LT +H+KSHLQK+RL+ ER+R EFL+++ ++
Sbjct:   66 ATNTSSFSGKQKKTDEDKSASKQRKYERKTKRFVWPDDLHRLFVAAIFDVGLKNASPKTLLTLMEPVEPDAGLTTEHLKSHLQKFRLNYERSRIEFLEYYDRS 168          
The following BLAST results are available for this feature:
BLAST of EWM27574.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109841|gb|EWM27574.1|0.000e+0100.00two-component response regulator arr12 [Nannochlor... [more]
gi|1173927743|gb|OQR81572.1|3.077e-2728.67hypothetical protein THRCLA_11609 [Thraustotheca c... [more]
gi|1173934679|gb|OQR85936.1|1.345e-2627.29hypothetical protein ACHHYP_11163, partial [Achlya... [more]
gi|673036772|ref|XP_008872347.1|1.834e-2336.81hypothetical protein H310_08408 [Aphanomyces invad... [more]
gi|669158040|ref|XP_008614582.1|6.725e-2338.07hypothetical protein, variant [Saprolegnia diclina... [more]
gi|298706342|emb|CBJ29351.1|6.842e-2363.51conserved unknown protein [Ectocarpus siliculosus][more]
gi|669158038|ref|XP_008614581.1|1.102e-2236.16hypothetical protein SDRG_10373 [Saprolegnia dicli... [more]
gi|813149677|ref|XP_012200485.1|1.009e-2135.59hypothetical protein SPRG_19952 [Saprolegnia paras... [more]
gi|698807756|ref|XP_009836907.1|1.163e-2137.02hypothetical protein H257_11609 [Aphanomyces astac... [more]
gi|953498813|emb|CEG39863.1|3.381e-2148.54Myb domain, plants [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3140rna3140Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications