rna3136, rna3136 (mRNA) Nannochloropsis gaditana

Overview
Namerna3136
Unique Namerna3136
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3107
Alignment locationCM002460.1:815715..817073 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100015g23.6397.mrna
Orig protein idgnl|cribi|Naga_100015g23.6397
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:815715..817073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100015g23gene3014Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27581.1cds3128Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3136rna3136-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3136 ID=rna3136|Name=rna3136|organism=Nannochloropsis gaditana|type=mRNA|length=3107bp
GGGCTCGCCAAGAACTGAAGGAAAACAAAAAACCCACAAAGCAGGCAGGC
ATGATACACAAACTCACTTGGGCAGTATTGCACAATGATGGACAGGTGGG
GCTGTGAGAGGTGTCGCAGTCGAATGCGGTCTACTCGGGCGTGTGAACGA
ACTTTTTCTGCGTGGTGAGTGCGTCGTCTGTGTCGGCTACCTGTGGCAGT
CACATCTCCAGCACCAGCACTATGCAGTCGCAGCATGAGGGCATGAAGAG
TGCAAGGATGCAGCCTCCGACATTCCACAGCCAAGCTTTTAGTGTTCTGC
ACGAGAAGTCAATCGCAGTAAGTAAAGTGGAGTTGTGTCCGAAAATGGAT
CTACTCGCTTTGCTTAGGACGGACGGGTCCGTGGTAGTGCTCCGCACCAT
ATCGTGGCAAAGATTGAATACGCTGCCCGCAGCCACTCTTCAGGATGAAA
AGCGCGTCACAGCAATGTCTTGGAGTCCGGATGGCAATGTGCTGGCTTTG
GGTCATGCGCAAGGGGCCATTTCTTTTTTGGACGTGGAAAAAGGCGAGCG
TGCCAGACAACCACTCGGCGCGCGTCCCGCTTCAACAGTTCAGCAGGGGG
TGGAGGCTTTGCAATGGTTCACACAGCAACGAGAGCCTGCGACCATGTCA
TCGGAGGACTGGGAGAAAAATCTAACACAGGCCGCAGGCAAGTACTATTT
AGACCGGGATGCCGTTTTTTGGGAGGAGCTGCCCCCTCTAGGATTGCAGA
GTGGCAGTTTTGCAGTGCCCAGGCACGTCAAGCAAGGCAGCATCGAGGCA
AAGTTGGCAGCTGGTGTCGCGTCCCTAGATGTGCTTGTGGCTTGTTTCCA
AGGCGGTCATATATTGGTGTTTTCATCGGGCCTTCTCCCTGTGGTGAGCT
TGAGGTTGCGTGACTTTTTCCCTCCGACCCCGGCACCTTCACTCGCCGAC
GAAAACGGCAGACATATTGGGGTAACATCCCCGGCTTCCATTCGCCAAGC
TCGTACAAACGTACAGCCCACTCCGTCGCCTGCGAAGCCAGCCAGCTCCC
CTCCTTCCATACTGTTGGATCACCCCTCCCAGTCATTCCTTCCGCGCGCG
GCATCGCCCACGCTTTCCCCGCCGGCCCTAAGCGTGCAATCACTGGCCGC
CTCGCGTGATCTCAGTGCGATGGTGTTCACAATTGCAGCAGGCGAAGGCT
CGCGAGGCGGTGTTTCCACGCTGGTGGTGCCCACGGCGGTACTCTGGACC
CATCGGCATCAGCTCAGGCCCTTGACGGTGGAGTTGGCGGCTGTGTCCGG
CCTCGTCAGTCACCTTTTAGAAGCCCTGGACATGGCAGAGCGACAGTGGA
ACGAAAGCGTTCGTACCCTCGATATCAAGCTGGAGCTTTTGAACGGTCTT
TTGCGCGATTACGCTTGCGAGGCCTCAGCCCGAGAGGCGCTCCTTTCCTT
TGTCCTATCCGGGGTCGCCTGTCCTGCCCTAAGTCAGTACCTGAGTCAAA
ACGGCTCGGAGCCACAACAGCAAAACATGTTTCGTCTTTTGAAGACCATG
GATGACAAGATCGCCGGCGTGGAGGGTCTTCTCCGCGAGCAAGTGGCCCG
CGTGGGGGAGATGATTGCTTTCCGTGCTGTCAAACTCCGGGGGCTCGCGC
GCTCGGGGCCTGACTACCAAGCGCTTGGACTGTCTACGAGTGCACTGTCA
GCGCTGATCAAGGCCGCGGGGGACCTAAGTGTAAAAGCGGAAGAGACGTT
GCGAGAGGTGCAGAGGGCCCGGCAAAACATTAAAGTCTTTGTGCTGTGGC
TCCTGGACACTATGCAGCACTTGCCGCCGACGGGGACAGAGGAGCCTCCC
GCCGCTAGCAAGCGTTTGACGTTCCGCCATTCCACCAAGCACACACGAAT
GCTCCTTTCTTTCCTTCGCAAGCCTGTTGCAGCGTCAGCACCGACCGATT
CCGAAGATGCTCCGGGTGAGAAGAGGGCCGCAGGGCCGACGGGCAACACA
GAAGCAGTCATCGCCGTGCACATTTCTTCGTACTTCAAGGACCAGCCCTT
ACCAATGCCTCCGTCCCGAATTATGACCACATCGGCACCTGCCCGGTCAC
CAGGATCGTGCGATGCCGTGGACGGGGGGGCAAAGGAGGGGGCGAAAGGC
TTGGCGTCCGTCTCCCTCCGCACGCAGGTCAAGTGGGTCTTAGCTCGTTT
CGAAGCCGTGTTCAGACGGCCCATGGAGGCAATTACAGACCGCCTGTCTT
CCCCTTATGTGCTCCTCTTGTCCCAGGGGCCCCTAGCATCACCACCCAGC
CTGTACGCCCCGGCCCGGTCTGACCCGTCTCGCATCCTCATGGCCGCCGT
GAGCTCAGGGGGTGCCAGGACCATTGTCCTTTCTATTGAAGTCGGCGCCT
TAGCTTCGCGCATGCGGTTAGGCGCGGAAACACCGAATGGAATACCTCAT
GTCGAGGTCACGGGCCTCTCTCTTGACGCGCCTGCCGGCTTCTCGTTTCA
ACAAGCTGCCCTCTATGGAAGTCGACCTCACATCCCCTCCTCCAATCCTG
AGTCAATTGTGCTTCTGGTCAGAGAAAACGTGCAGCCTTTCGAGATTCGA
ACTCCAGCGGAGCTCTGGAAACTTCCATTGACCAGTCTCCTCACTCATCT
GAATCCGGTGGACAAGGAGGGCGGGGCTCGAGCCTGTCTCCTCGACGGCC
AAGGTGCGCGAAGCTTGCTCCCGTGGGAGATGGTTTCTAATGTAAGGACT
CGGCAAGTGGCTGCAGTTGCGCCCAGAAAGCTTGCACTTGCCGTCACAGG
CTGCCGGGGGATAGCGTGTGTGACGTCTGAATCAAATTTTTTGCTGCTTG
CTGACCTGGAGGAGGACGAGGACGAAGACGAGGAGGAAGAGGGAAACGAA
GGTGAAGGACAAGGGGTTGGAAGGGTAACTCGCCTACAGGAGCAATTGGA
CGGCCTTACTAACGAAGTAATGCAGGTCGAGTCAACGATGAGGATGGAGA
TTGTACAGGGAGAGGAAAATGAGGATGCGAAGAGCGCTTGTTGATGTGTG
GCTTTAACAGTACTAAGTAGTGTACAGATGGTAGAAGATATGATCACTTT
GGTCGTG
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protein sequence of rna3136

>rna3136-protein ID=rna3136-protein|Name=rna3136|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQTDPTARACYLHVALE
HQARVQELDLICAAPTIVVNLMRGKSTTGMSYTYLTTLKGQTSEEYPGLF
AFRIDASLLSHVEVWQLQIKFLFPRVGEKSLLIKKVSVIVEDQAKKRGEL
NMKAETGAGKRGVLDRTNSTAIQNYNPQQQRQYYPPPVPPQPFNAESAVM
VGLVVVDQVLGVMTKEIQDNLESTCRGVEKRLLADLKRLEGKMRRIEEVY
DDIAADIRLTSLQSALEEARMAQGLAANDPEKKSATDADGGNEDQEEGDP
GGVWGTGALQQDIYYGIGVGV
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mRNA from alignment at CM002460.1:815715..817073-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3136 ID=rna3136|Name=rna3136|organism=Nannochloropsis gaditana|type=mRNA|length=1359bp|location=Sequence derived from alignment at CM002460.1:815715..817073- (Nannochloropsis gaditana)
AGCGCACATTATGCCTCTAAAAGGCAGGCCGAGCCGATGAAGTGGTGCAC
AAATGATTTCCGTCCATGATTCAATCAAATGAAATAACCTTTCGTGACTC
TTTGCTCGTCTTACTGAGAATTTATCCTCCATGAAGGTCTTTCGTACCGC
AATGTCGTCAGTCGTCGGACATGACGGAGCCCTACTCTTAGGACCCCCTG
TCAGGTCTTTTACTGACACATCCATTTTCACCTCTTATCAATAATAAAAG
CAGATATGCCGTATTTAAAAAGCAACTGGTCATCCATGCCACCCTTGGAA
GAATTTGGGCGTTTTGCTTTTGGTGAGATTTTTACCATCCCTGAGATGAC
CTTGACACAGACGGACCCTACGGCACGGGCGTGCTACTTGCACGTGGCCT
TAGAACATCAGGCCCGCGTTCAGGAATTAGATCTTATCTGTGCAGCACCA
ACAATAGTTGTAAACCTTATGAGGGGAAAATCCACGACGGGAATGAGCTA
TACATACCTGACCACTCTCAAGGGCCAAACTTCGGAGGAGTATCCTGGCC
TCTTTGCCTTTCGCATAGATGCATCGCTCCTTTCCCATGTCGAGGTATGG
CAACTTCAAATTAAATTTTTATTCCCACGTGTTGGGGAAAAATCGTTATT
GATCAAAAAGGTGAGCGTTATTGTGGAGGATCAGGCGAAGAAACGGGGAG
AGCTGAACATGAAAGCCGAGACGGGTGCGGGCAAGCGAGGCGTTTTGGAT
AGGACCAATTCCACGGCAATCCAGAACTATAATCCACAGCAACAACGGCA
GTATTATCCTCCGCCTGTGCCTCCGCAACCATTCAACGCGGAGAGCGCTG
TAATGGTAGGTCTCGTAGTAGTCGATCAGGTTTTGGGTGTCATGACCAAA
GAAATTCAGGACAACCTGGAATCGACCTGCCGCGGTGTGGAAAAGCGTCT
GCTAGCGGATTTGAAAAGACTGGAGGGGAAAATGCGACGAATTGAGGAAG
TCTATGATGATATTGCGGCGGACATCCGGCTAACGTCACTACAGTCCGCT
CTTGAGGAAGCGCGAATGGCACAAGGCTTGGCCGCGAATGATCCAGAAAA
GAAGTCGGCCACAGATGCGGACGGTGGAAACGAGGATCAGGAAGAGGGTG
ATCCAGGTGGGGTATGGGGAACAGGGGCATTGCAGCAAGACATATACTAC
GGCATAGGCGTGGGTGTGTGAGGGCGGCGATGTTGGGAGCTTCGCAAAGG
GGGCGTTAGCTGCAACAGATGCATTGAAAGCTGGCATATTTAGGCCGCAG
TCAGATTGCGAAGCATAACAGATCCCAAAAGAAACACGAAGCACGACCAA
AGTGATCAT
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Coding sequence (CDS) from alignment at CM002460.1:815715..817073-

>rna3136 ID=rna3136|Name=rna3136|organism=Nannochloropsis gaditana|type=CDS|length=966bp|location=Sequence derived from alignment at CM002460.1:815715..817073- (Nannochloropsis gaditana)
ATGCCGTATTTAAAAAGCAACTGGTCATCCATGCCACCCTTGGAAGAATT
TGGGCGTTTTGCTTTTGGTGAGATTTTTACCATCCCTGAGATGACCTTGA
CACAGACGGACCCTACGGCACGGGCGTGCTACTTGCACGTGGCCTTAGAA
CATCAGGCCCGCGTTCAGGAATTAGATCTTATCTGTGCAGCACCAACAAT
AGTTGTAAACCTTATGAGGGGAAAATCCACGACGGGAATGAGCTATACAT
ACCTGACCACTCTCAAGGGCCAAACTTCGGAGGAGTATCCTGGCCTCTTT
GCCTTTCGCATAGATGCATCGCTCCTTTCCCATGTCGAGGTATGGCAACT
TCAAATTAAATTTTTATTCCCACGTGTTGGGGAAAAATCGTTATTGATCA
AAAAGGTGAGCGTTATTGTGGAGGATCAGGCGAAGAAACGGGGAGAGCTG
AACATGAAAGCCGAGACGGGTGCGGGCAAGCGAGGCGTTTTGGATAGGAC
CAATTCCACGGCAATCCAGAACTATAATCCACAGCAACAACGGCAGTATT
ATCCTCCGCCTGTGCCTCCGCAACCATTCAACGCGGAGAGCGCTGTAATG
GTAGGTCTCGTAGTAGTCGATCAGGTTTTGGGTGTCATGACCAAAGAAAT
TCAGGACAACCTGGAATCGACCTGCCGCGGTGTGGAAAAGCGTCTGCTAG
CGGATTTGAAAAGACTGGAGGGGAAAATGCGACGAATTGAGGAAGTCTAT
GATGATATTGCGGCGGACATCCGGCTAACGTCACTACAGTCCGCTCTTGA
GGAAGCGCGAATGGCACAAGGCTTGGCCGCGAATGATCCAGAAAAGAAGT
CGGCCACAGATGCGGACGGTGGAAACGAGGATCAGGAAGAGGGTGATCCA
GGTGGGGTATGGGGAACAGGGGCATTGCAGCAAGACATATACTACGGCAT
AGGCGTGGGTGTGTGA
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Synonyms
Publications