rna3125, rna3125 (mRNA) Nannochloropsis gaditana

Overview
Namerna3125
Unique Namerna3125
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1610
Alignment locationCM002460.1:780870..781596 -

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Properties
Property NameValue
Productubiquinol cytochrome c reductase subunit qcr9
Orig transcript idgnl|cribi|Naga_100015g34.6405.mrna
Orig protein idgnl|cribi|Naga_100015g34.6405
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:780870..781596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100015g34gene3003Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3125rna3125-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27589.1cds3117Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3125 ID=rna3125|Name=rna3125|organism=Nannochloropsis gaditana|type=mRNA|length=1610bp
GTTCGTGTTACTCGGACGCAGGCAATTACCGGTGACTTTTATTGTGTGGA
AAGCGGCGCTCGCTGCCGTCTCGCCCCCAGGCTGACGAATGCGGTGAGGC
GGCGAGTTGTTCGGGGATGCTTACACCACACAAAAAATCACGTGTTTTTT
TTCCTGGAGAAACACGTGACAAGTGGTGACTCGAGGCCAGAAATAGGATG
GTTGCTTGCATTGTGCAGCACCTAAATTGCTTCCTTTTTCCACTTGCTTC
CCTCGCCCTTTCGCTTCATATGCGATTCCCGTTATTCCTTCACACTCACT
TGTACGACCTCCGCCACCCCCCACAGCATTCTGCTGTGATTCAACCCTGT
CTATAATTCGTAATGTCTGGTGGTTGCCCGCTGCGAGTCTTACTGCGTCC
CCTCCTGCTGTGCGCCATCCTTTCCCGACGAATCGTCTCCTTCAGTACCC
GGCGTCCTCTGTTTTGCGCCCGTCCGTCAACCTCCGCCTTTGATTGGTCT
TCAAATAAGCACTCGATAGCCACCATTTATCCCTCTACTAGTTACAAGCT
GAGTGCCTTGTCTTCGACGCCGTGGCCTTTACCGGAAGTGGAGGCACGGG
CCGCACTCCCAAGCACACGTCGAGCAGCCCGTGACGTTTCCATGGCCAAA
CTTGCAAAGATAACCGGCGGTGCCGCGCCCGCTGTCGAGACGAGTCAAAA
GCAATCATTCTCCCTGTCAGCACTGTGGGGGGTGGTGGGGGTTGTGGCTA
TGCTCAGCAACGCCATCCGTCGACTCTTGCCCATCGCCCTGGAGCCTTTC
AAGAAGACGGCGACCCCTACGGCCTTCACACCTCTCCACTGGGCGCAATA
CGTGGGATTTGCTCTCATCATGGCATATGCAGAGGGCTACAAAGGCTTCC
AGCTCAAATTCTCCCCGCTGGTAGTAAAACGCGCCCTCACCCTGGGTCCT
CGCTCCCCCCTCCTCCACAAGGTCCTGGCGGCCCCCTACAGCATGGGCCT
CTTCCACGCGAGTAAAAAACGACAAATCGTGTCGTGGACGATCGCCTTGG
GTGTGATCGGCCTCGTGAAAGCGGTCAAGACGCTGGCCTTCCCCTACCGG
TCCATCGTGGACGCGGGCGTGGTGGCAGGCCTTTCCTGGGGCGCCCTATC
CATCGCGGGGATCTACGCGCAGGCCCTTCGGGGACATGTTCCGAGCATAG
ACCCAGCCTTGCCGGACGTGAAGAAGGCGTAAGGGGGGTATAGGACGGAT
GCAGGGAGGGTATCTCGGAGGGGTCGGGCGAAAGCAACGGGCAGGAGGTT
TGGACCCGGCGACATGCTGATCGAGGAAATAGATTCGAAGCCCATGCTTA
ACAGTGCCTCGGATGGAGGTACCCCGTTAAGGATCGTGGGCGGCATCACG
AGGCAGGAATGAATGCAATACTCTGGGGACGAGGGCTCTCCTGCTCCTTG
TAGGGGGCTGTGGGTAGGACCACAGTGGGGGCGCTAGCGGAAATTTTGAT
ACCATGAGAAAGAAACGAAGATCACGACCATTGGCGTGTGCCTCTTGTTG
ACATGTGTGCGGGATTGTAGACGCTCGTGAGATTGGAAACGGAGAGCGCG
ATGCCAAGCA
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protein sequence of rna3125

>rna3125-protein ID=rna3125-protein|Name=rna3125|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
MLFSTAFRRMPVQRLAMAGNGRRGLATASPGGSGAFVHTLYRNVFRSNIA
YLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKWHFHLDEEEE
EEEEEEEDE
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mRNA from alignment at CM002460.1:780870..781596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3125 ID=rna3125|Name=rna3125|organism=Nannochloropsis gaditana|type=mRNA|length=727bp|location=Sequence derived from alignment at CM002460.1:780870..781596- (Nannochloropsis gaditana)
ATGCTGTTTTCTACGGCATTTCGACGCATGCCTGTCCAGCGGCTGGCAAT
GGCGGGGAATGGTACGTGGAGAGCAAACACGAATAGGGATGGAAAGGATA
GCTTGGGCAGGGTGGGAAAGTGGTCAACGGGCTGAGAGACTTCGAATAAT
TTATTTGTTGGCGCGAACTCATTTTGAAAGCACGCCACCAATCAATTAAT
CTATCCTCTGTATCATGATAGGTCGGCGTGGTCTTGCTACGGCCAGTCCA
GGAGGCAGCGGGGCGTTCGTGCATACGCTGTACAGGAATGTGTTCCGCAG
CAACATTGCCTATTTGACTTACGTCTTCGCAGGAGCCATTGTTGTGGAGT
GGGTGTACTCGAAAGGCATCGATACGGCCTGGGAAATAAGTAACAGAGGG
GTGCGTACTATCTGAAAGTCATCCTCCGCCACATGGAGAGCAACATAGGG
TGTAAGGGAGGAGCTGGAGACAACGTTGTCGCTCGCGCGCTCAGGCAACC
ACCTGTCACACAATCTATGCGTGATCTGTTCGTGTCGCGTGCAAGTGATG
TCGTCGAGAGTGCTCTCTTTCCATGGTGTCACTTTTGATCACGAGGGCGT
GGCACTGACTCCCTCCCTTTTCCTTTGCACTCCACAGAAACTCTTCCATC
AAGTAGACTGGACAAAGTGGCACTTTCACCTGGACGAGGAGGAAGAGGAA
GAGGAAGAGGAGGAGGAGGACGAATAG
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Coding sequence (CDS) from alignment at CM002460.1:780870..781596-

>rna3125 ID=rna3125|Name=rna3125|organism=Nannochloropsis gaditana|type=CDS|length=990bp|location=Sequence derived from alignment at CM002460.1:780870..781596- (Nannochloropsis gaditana)
AAACTCTTCCATCAAGTAGACTGGACAAAGTGGCACTTTCACCTGGACGA
GGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGACGAATAGGTCGGCGTGG
TCTTGCTACGGCCAGTCCAGGAGGCAGCGGGGCGTTCGTGCATACGCTGT
ACAGGAATGTGTTCCGCAGCAACATTGCCTATTTGACTTACGTCTTCGCA
GGAGCCATTGTTGTGGAGTGGGTGTACTCGAAAGGCATCGATACGGCCTG
GGAAATAAGTAACAGAGGGATGCTGTTTTCTACGGCATTTCGACGCATGC
CTGTCCAGCGGCTGGCAATGGCGGGGAATGAAACTCTTCCATCAAGTAGA
CTGGACAAAGTGGCACTTTCACCTGGACGAGGAGGAAGAGGAAGAGGAAG
AGGAGGAGGAGGACGAATAGGTCGGCGTGGTCTTGCTACGGCCAGTCCAG
GAGGCAGCGGGGCGTTCGTGCATACGCTGTACAGGAATGTGTTCCGCAGC
AACATTGCCTATTTGACTTACGTCTTCGCAGGAGCCATTGTTGTGGAGTG
GGTGTACTCGAAAGGCATCGATACGGCCTGGGAAATAAGTAACAGAGGGA
TGCTGTTTTCTACGGCATTTCGACGCATGCCTGTCCAGCGGCTGGCAATG
GCGGGGAATGAAACTCTTCCATCAAGTAGACTGGACAAAGTGGCACTTTC
ACCTGGACGAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGACGAATAG
GTCGGCGTGGTCTTGCTACGGCCAGTCCAGGAGGCAGCGGGGCGTTCGTG
CATACGCTGTACAGGAATGTGTTCCGCAGCAACATTGCCTATTTGACTTA
CGTCTTCGCAGGAGCCATTGTTGTGGAGTGGGTGTACTCGAAAGGCATCG
ATACGGCCTGGGAAATAAGTAACAGAGGGATGCTGTTTTCTACGGCATTT
CGACGCATGCCTGTCCAGCGGCTGGCAATGGCGGGGAATG
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Synonyms
Publications