EWM27589.1, cds3117 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27589.1 vs. NCBI_GenBank
Match: gi|585109856|gb|EWM27589.1| (ubiquinol cytochrome c reductase subunit qcr9 [Nannochloropsis gaditana]) HSP 1 Score: 226.483 bits (576), Expect = 3.986e-75 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 Query: 1 MLFSTAFRRMPVQRLAMAGNGRRGLATASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKWHFHLDEEEEEEEEEEEDE 109 MLFSTAFRRMPVQRLAMAGNGRRGLATASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKWHFHLDEEEEEEEEEEEDE Sbjct: 1 MLFSTAFRRMPVQRLAMAGNGRRGLATASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKWHFHLDEEEEEEEEEEEDE 109
BLAST of EWM27589.1 vs. NCBI_GenBank
Match: gi|698795422|ref|XP_009830740.1| (hypothetical protein H257_07026 [Aphanomyces astaci] >gi|574114316|gb|ETV79804.1| hypothetical protein H257_07026 [Aphanomyces astaci]) HSP 1 Score: 55.4546 bits (132), Expect = 7.849e-8 Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 0 Query: 21 GRRGLAT--ASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKW 91 +R ++T +S G G F + LY + R+N+ Y++ V AG +V E VY + WE N G+L+H +DW+++ Sbjct: 15 AQRSMSTKASSINGKGPF-NVLYNTIMRNNVTYVSAVIAGTLVFEVVYGNVTSSIWESLNYGRLYHHIDWSQF 86
BLAST of EWM27589.1 vs. NCBI_GenBank
Match: gi|325187693|emb|CCA22235.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 54.299 bits (129), Expect = 1.334e-7 Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 0 Query: 24 GLATASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTK 90 G+ +S G+ + TLYR + N+ Y+T + I E VY D+ WE NRG+L+H +DW+K Sbjct: 2 GVKRSSWNGTST-METLYRAFMKRNMTYVTTILFATIAAEAVYGTATDSFWEAMNRGRLYHHIDWSK 67
BLAST of EWM27589.1 vs. NCBI_GenBank
Match: gi|1214713799|gb|OWZ24679.1| (hypothetical protein PHMEG_000202 [Phytophthora megakarya]) HSP 1 Score: 53.5286 bits (127), Expect = 6.941e-7 Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 0 Query: 2 LFSTAFRRMPVQRLAMAGNGRRGLAT--ASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKW 91 + S R++ Q A G R +T +S G GA Y+ +S Y+T V A+VVE VY + WE +NRG+L+H +DW+K+ Sbjct: 1 MLSRTIRQVATQ----AKQGARMASTKRSSVNGKGAL-DGAYKVFMKSTPVYVTTVLIAALVVEGVYGSATNYIWEANNRGRLYHHIDWSKF 87 The following BLAST results are available for this feature:
BLAST of EWM27589.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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