EWM27589.1, cds3117 (CDS) Nannochloropsis gaditana

Overview
NameEWM27589.1
Unique Namecds3117
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:781536..781596 -
Alignment locationCM002460.1:781197..781375 -
Alignment locationCM002460.1:780870..780959 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27589.1
Productubiquinol cytochrome c reductase subunit qcr9
Orig transcript idgnl|cribi|Naga_100015g34.6405.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:781536..781596 -
CM002460.1supercontigCM002460.1:781197..781375 -
CM002460.1supercontigCM002460.1:780870..780959 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
GO:0005743mitochondrial inner membrane
GO:0005750mitochondrial respiratory chain complex III
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0006122mitochondrial electron transport, ubiquinol to cytochrome c
Vocabulary: INTERPRO
TermDefinition
IPR008027QCR9
Homology
BLAST of EWM27589.1 vs. NCBI_GenBank
Match: gi|585109856|gb|EWM27589.1| (ubiquinol cytochrome c reductase subunit qcr9 [Nannochloropsis gaditana])

HSP 1 Score: 226.483 bits (576), Expect = 3.986e-75
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0
Query:    1 MLFSTAFRRMPVQRLAMAGNGRRGLATASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKWHFHLDEEEEEEEEEEEDE 109
            MLFSTAFRRMPVQRLAMAGNGRRGLATASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKWHFHLDEEEEEEEEEEEDE
Sbjct:    1 MLFSTAFRRMPVQRLAMAGNGRRGLATASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKWHFHLDEEEEEEEEEEEDE 109          
BLAST of EWM27589.1 vs. NCBI_GenBank
Match: gi|698795422|ref|XP_009830740.1| (hypothetical protein H257_07026 [Aphanomyces astaci] >gi|574114316|gb|ETV79804.1| hypothetical protein H257_07026 [Aphanomyces astaci])

HSP 1 Score: 55.4546 bits (132), Expect = 7.849e-8
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 0
Query:   21 GRRGLAT--ASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKW 91
             +R ++T  +S  G G F + LY  + R+N+ Y++ V AG +V E VY     + WE  N G+L+H +DW+++
Sbjct:   15 AQRSMSTKASSINGKGPF-NVLYNTIMRNNVTYVSAVIAGTLVFEVVYGNVTSSIWESLNYGRLYHHIDWSQF 86          
BLAST of EWM27589.1 vs. NCBI_GenBank
Match: gi|325187693|emb|CCA22235.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 54.299 bits (129), Expect = 1.334e-7
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 0
Query:   24 GLATASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTK 90
            G+  +S  G+   + TLYR   + N+ Y+T +    I  E VY    D+ WE  NRG+L+H +DW+K
Sbjct:    2 GVKRSSWNGTST-METLYRAFMKRNMTYVTTILFATIAAEAVYGTATDSFWEAMNRGRLYHHIDWSK 67          
BLAST of EWM27589.1 vs. NCBI_GenBank
Match: gi|1214713799|gb|OWZ24679.1| (hypothetical protein PHMEG_000202 [Phytophthora megakarya])

HSP 1 Score: 53.5286 bits (127), Expect = 6.941e-7
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 0
Query:    2 LFSTAFRRMPVQRLAMAGNGRRGLAT--ASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKW 91
            + S   R++  Q    A  G R  +T  +S  G GA     Y+   +S   Y+T V   A+VVE VY    +  WE +NRG+L+H +DW+K+
Sbjct:    1 MLSRTIRQVATQ----AKQGARMASTKRSSVNGKGAL-DGAYKVFMKSTPVYVTTVLIAALVVEGVYGSATNYIWEANNRGRLYHHIDWSKF 87          
The following BLAST results are available for this feature:
BLAST of EWM27589.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109856|gb|EWM27589.1|3.986e-75100.00ubiquinol cytochrome c reductase subunit qcr9 [Nan... [more]
gi|698795422|ref|XP_009830740.1|7.849e-835.62hypothetical protein H257_07026 [Aphanomyces astac... [more]
gi|325187693|emb|CCA22235.1|1.334e-737.31conserved hypothetical protein [Albugo laibachii N... [more]
gi|1214713799|gb|OWZ24679.1|6.941e-734.78hypothetical protein PHMEG_000202 [Phytophthora me... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3125rna3125Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications