rna3121, rna3121 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3121
Unique Name	rna3121
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2691
Alignment location	CM002460.1:767408..769115 -

Link to JBrowse

Properties


Property Name	Value
Product	brca1-associated ring domain protein 1
Orig transcript id	gnl\|cribi\|Naga_100015g38.6344.mrna
Orig protein id	gnl\|cribi\|Naga_100015g38.6344
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:767408..769115 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g38	gene2999	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27528.1	cds3113	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3121	rna3121-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:767408..769115-
coding sequence from alignment at CM002460.1:767408..769115-

mRNA sequence

>rna3121 ID=rna3121|Name=rna3121|organism=Nannochloropsis gaditana|type=mRNA|length=2691bp
GTGATGAGGCAATTACCGAAATGTGGGCTGCACGAAACATCGACATGAAG
TTTCGCGTTTGCTTTTGTTTCCTCAGGAATAAGGGTAGAGGTCATATGGC
CAGCAGAAGGCAGGAATGTGTCTGTTCTGCTCGAAATCAGCACTGACACT
TCGCCCCTCATTCGACCCTCGAAACTTTTTTCCGCGGCTGGACACTCGTA
CGCACGCACTCACCATACACTCCTTGCTCATGGGCTTCATGAATGAATGT
CACATATCTCATCCAGATTCTGCTGTGGTCCTTTTAATTGAGGCTGCACA
GTACTTCATAGAAGCGCCTGTTTTTGAAGTGCCCGGGGCTTTTAACACCT
CTCACCGATGCACTGCTGGGAGGCAAGCGTCCTTCCTCACCTGCTCTGGG
GCATCCACGGCTCCTCGCTGCGATAAAATGCACGGTGACAATCTGCTTCG
GAGCACACGCTGTAATACTAGCTTAGAACATCATCAAGGCGGCGGGGACG
GCCAGCCTCTGGATTGGAGCACCAGCCTTGCCTCTTCGTTCTCTTCCCTC
TCCCAGTCGTCGCGCTCTTTTCGCACATCCAATCACCACGACGTCTGCCA
CGACGGTCACAATCATTGCCGATACAGCAGCTCTAGTAGTGACAGCAGTA
CCAGTAGCTGTTCGTCTCTTGGTCATAACGCAGAGCCCTCTCCTTTCGCA
GCCCTCACTGATACGGTCTCAGGGGTGATGGATAGCGTTCAGACAGCGCG
GAAGCATCCTGTCCTTGCCACGGTTCTGTGGTTGTTGGGCGGGTCGGTGG
AGCAGAAAGAAGCCAGAGCAGGCCCCAAAGGGCCCTCTTCATCGCTAGCG
GGCTCGGCTAGTACCAGCTCCCGCTCTTCGGGCAACAACGACGAAGATTA
CATTTGCAACGATGAGAACAACACTGTCGGCAAGTCTAGCGCCCCGAAGA
ACAACCCGCGTCAGCCCTGCCTGGCGGACAACATGCTGGCCCGATCCCGC
CACCCGCAAACAGGCAACGCCGACGACGAGGACAAGGACGGGCGCCAGCC
AGACATCCATCGGCTGCGCTGGACTGCGGGAGCAGCGACGGGGACAACCC
CCCCGAAGACTAAGGTTAAAGACCGCGTGATTTATTTCTTGGAGGGTGGT
CGGCCCTCCTCGGCCGTTCCCGGTCTGGCGCCTCCGTCGGGGAACCGCTC
TTTCCAGGGGGGCAGGCTGGGGGGCGAGAATGGTGGCACGATCGCGGTGG
AGAGGATCACGCACATGGATAGATTGGAGGAGGACGACTTGGGCGAGCCC
CGGAGAGGAAGGGAAAGGGAGAGAGGAAAAGGGGCCAGGGTCTATGATCA
GGAGAACGCGACGTGCGCCAGTACGGCCCAACGACAGCTGGAGCACTACA
ACAATCGGTGTGGAGAGTGCTCCCCTGGCATCCCGCCCGAGCTAGCGGGG
TCGGGGGCAGCCGGCAATGATCCCGACGTGTCCCCACAGTGGGGCTGGTA
CGTGGCGCTCACGCCCCCTAAGCCGGAGTTCTTCCAGGCAGGCAACAACG
GGGCCGGCCTGGGAGGCCACCACCACCATCACCACCACCATCACCACCAC
CGAGGCCACCGTCATCATCCTCCTCGCGTCCCCGAACCTTTGCGCCCGGC
CATGACATGAGGGCATAGGGCAGCGATTTGCTGAAAAGGCTTGGGCATAA
CGAATGGTGAAGCGCACAGGGGGGGCTGGTTTCTTGAGTAGTTTATGTGG
AGCGGCTTGGAAGATGACACGACTCGGAAAGAACGTGTTTAGGAGAGGTC
CTGTGAAACGGCAGCACAGGAGCGGGAAGAAGACCACGTCGCATTTCTGT
GGCGATTCAAAGTAGACTTAATGATATGATAAAGCCTCCAGGCTCATATG
TGCACGTCTGACAGAGAGGTTGCAGAGTGAACGGAAGCGAGGGTGCGGCG
AGAGCAGCTGAAGCTGCAGAGCGGCGAGAGGGATCACCACGTCAACCAAA
TCATGTGATGCACATCCCAATACACAAGCTTTCATTGTGGGGCAAACAAC
AGTACAGGGGTAAAAAAGAGTACCACGTAATAAGAAACATGTGCACGTGA
AAGGAATGATTGGGCCATGATATTTTGATAACTATGTATGGAAAGGGGGT
AGTTCAGGCACGCTGGAGTCCCCGTGGTATCAAAATGAAAAATTTTGTGT
TTTTACCGGGAAAGCTGCAGAAAATAAGAGACACGTGGAAATGAGCGAAC
ACTTTTTGAGACAGGAAGATATAGGATTGGGGATATGTGCACAGACTTAG
GGGAGGAACGTACAGTGCATCGGGAAAGACGGGGGCAAAATAGTGTCTGT
CGGCTGGGCTGATCGTGGGCCAGGCCTCTCCTACATCACTATTTTTAATA
CTTGACCTGAGGCGCGCCAAGGAACAAAGAGAGGTATTGACCTCTCTCCT
CCTCGCGGCGCACATGCTAGAAAAGCACACAACGGATGGGAAAAGCCCGT
CCGGGGACAGATCTACCCGGTCACTCCGCAAGGCCGCCGCACTGATAGCC
GCGAAAGCAACAGGGCTTGTGTAAGGCAAATATGGAGTGAAAGCTTTGAA
GAAGGGGGTGTGTCCCATGATTTTTTTGTGAGGAGGGACTTCGGATAGGG
AGCAAAATAAAGAAATAAGGCTGGCAGGACAAAGGCAGACG

protein sequence of rna3121

>rna3121-protein ID=rna3121-protein|Name=rna3121|organism=Nannochloropsis gaditana|type=polypeptide|length=547bp
MLKRGTSGENDEGAGTRAKDGKEEEEEGEEAEEEEDSDGEPGGRLRRRVP
PVPFVVGDTVEVAARTWPGINKEGGVARIVAVHGAEGGREGGAEGGREGG
AEGGCITYDVKYMLSGGEKRVKGKYISSANVLVAPTAAECRPDGAGRGRG
GGGGRAGGRAAWTEHAPPVPAKGGETTEGRVHVHTSRGTVGGGHASPSPF
SSRKRPADAMTADAASSPPSPSRPSTTPSHSKPSAVLSPLQWALRPALSF
SASSSPLPSRPQAPCLPSRPSQASAPRRLPEPDPDPADRDSYRTHPQDIV
ILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRT
IKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTK
ARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAA
FEREEREEEEEIGHRLTEGGEEGRVTRKTVMICNSLPAKEAVGAVKSGTM
TVSAWAEGGRPVVSSDWLLDSISNYRVMDLKRFAVIRPRGRQEQGNT

mRNA from alignment at CM002460.1:767408..769115-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3121 ID=rna3121|Name=rna3121|organism=Nannochloropsis gaditana|type=mRNA|length=1708bp|location=Sequence derived from alignment at CM002460.1:767408..769115- (Nannochloropsis gaditana)
ATGCTGAAGAGAGGGACGTCGGGTGAGAATGATGAGGGAGCGGGGACGAG
GGCGAAGGACGGAAAGGAGGAGGAGGAAGAGGGAGAGGAGGCGGAGGAGG
AGGAGGACAGCGACGGAGAACCTGGAGGCAGGCTCCGACGGCGAGTTCCG
CCGGTGCCCTTCGTCGTGGGCGATACGGTGGAGGTAGCGGCCCGGACATG
GCCGGGCATCAATAAAGAGGGGGGCGTGGCAAGGATCGTAGCCGTCCATG
GGGCGGAGGGAGGGAGAGAGGGCGGGGCCGAGGGAGGGAGGGAGGGCGGG
GCCGAGGGAGGGTGTATCACGTACGACGTGAAGTACATGCTCTCGGGCGG
TGAAAAGCGCGTGAAAGGGAAGTACATCTCGAGCGCCAATGTGTTGGTGG
CTCCCACAGCCGCCGAGTGTCGACCAGACGGGGCAGGGAGGGGGAGAGGG
GGAGGAGGAGGGCGGGCGGGAGGCAGGGCAGCTTGGACCGAACATGCCCC
CCCGGTACCCGCGAAGGGGGGGGAAACAACGGAAGGAAGGGTGCACGTGC
ACACGAGCAGGGGGACGGTGGGAGGTGGTCACGCCTCGCCCTCCCCATTT
TCCTCCCGAAAAAGGCCAGCGGACGCCATGACGGCCGACGCGGCGTCCTC
CCCGCCTTCCCCCTCCCGACCAAGCACCACCCCGTCGCATTCCAAGCCGA
GCGCTGTCCTTTCTCCACTCCAGTGGGCCCTTCGGCCCGCCCTTTCCTTC
TCTGCGTCCTCCTCGCCTCTTCCCTCCCGTCCACAGGCTCCCTGTCTCCC
CTCCCGCCCCTCGCAGGCATCGGCGCCAAGGCGCCTGCCCGAGCCTGACC
CCGACCCCGCGGATAGAGACTCCTACCGCACGCACCCCCAGGACATCGTC
ATTTTACCAACCTCCCTCCCGCACTCCCTCTTGGGCAGCCTGGACGCCTT
CGCCCGCCGCTTTGACGCCCGCGTCACCAAGCTTCCCGGTCCACAAGTGA
CGCACGTTCTGGCTCGAGCCGACGGGCGGCGGCGGGCGGAGACGCGGACG
ATCAAGTACTTGCACGGCATCCTCGCGCGCCGCTGGGTGCTGGCCCCTTC
CTGGCTGACGGGGTCTTTGGCGAAAGGGAAAGTGGAGGCGGAAATTCGAC
ACGAAATCGTGGGGGATCCGAAGGCGACGGAGCCGTCCGCGCCGACCAAA
GCCCGGTTGAGCCGATACAAGCAGATACCTCCCCTCTTTGCCGCCTACCG
GGTGGTGTTTGGGGGTGATTTCCCCCCGCCCCGGCCGACCAGACGGGATC
TGGAAAGCCTCGTGAAGGCGGGCGGCGGGCGCGTCGTGACACTCGCGGCG
TTTGAAAGGGAGGAAAGGGAGGAGGAGGAAGAGATTGGGCACAGACTGAC
CGAGGGCGGAGAGGAAGGGAGGGTGACGAGGAAAACGGTCATGATCTGCA
ATAGCCTTCCCGCCAAGGAGGCTGTGGGGGCCGTCAAGTCAGGGACCATG
ACTGTCTCCGCCTGGGCGGAAGGCGGGCGGCCGGTCGTCTCATCGGACTG
GCTTTTGGATAGCATCAGCAACTACCGAGTCATGGATTTGAAGAGATTTG
CTGTAATACGTCCCCGGGGTAGACAGGAGCAGGGAAACACATGACACTAC
CGATGTGGGACTGGCCGTGCGTGTAAGCAATGCAAAATACAGCGATCGCG
AAGGTGCG

Coding sequence (CDS) from alignment at CM002460.1:767408..769115-

>rna3121 ID=rna3121|Name=rna3121|organism=Nannochloropsis gaditana|type=CDS|length=1644bp|location=Sequence derived from alignment at CM002460.1:767408..769115- (Nannochloropsis gaditana)
ATGCTGAAGAGAGGGACGTCGGGTGAGAATGATGAGGGAGCGGGGACGAG
GGCGAAGGACGGAAAGGAGGAGGAGGAAGAGGGAGAGGAGGCGGAGGAGG
AGGAGGACAGCGACGGAGAACCTGGAGGCAGGCTCCGACGGCGAGTTCCG
CCGGTGCCCTTCGTCGTGGGCGATACGGTGGAGGTAGCGGCCCGGACATG
GCCGGGCATCAATAAAGAGGGGGGCGTGGCAAGGATCGTAGCCGTCCATG
GGGCGGAGGGAGGGAGAGAGGGCGGGGCCGAGGGAGGGAGGGAGGGCGGG
GCCGAGGGAGGGTGTATCACGTACGACGTGAAGTACATGCTCTCGGGCGG
TGAAAAGCGCGTGAAAGGGAAGTACATCTCGAGCGCCAATGTGTTGGTGG
CTCCCACAGCCGCCGAGTGTCGACCAGACGGGGCAGGGAGGGGGAGAGGG
GGAGGAGGAGGGCGGGCGGGAGGCAGGGCAGCTTGGACCGAACATGCCCC
CCCGGTACCCGCGAAGGGGGGGGAAACAACGGAAGGAAGGGTGCACGTGC
ACACGAGCAGGGGGACGGTGGGAGGTGGTCACGCCTCGCCCTCCCCATTT
TCCTCCCGAAAAAGGCCAGCGGACGCCATGACGGCCGACGCGGCGTCCTC
CCCGCCTTCCCCCTCCCGACCAAGCACCACCCCGTCGCATTCCAAGCCGA
GCGCTGTCCTTTCTCCACTCCAGTGGGCCCTTCGGCCCGCCCTTTCCTTC
TCTGCGTCCTCCTCGCCTCTTCCCTCCCGTCCACAGGCTCCCTGTCTCCC
CTCCCGCCCCTCGCAGGCATCGGCGCCAAGGCGCCTGCCCGAGCCTGACC
CCGACCCCGCGGATAGAGACTCCTACCGCACGCACCCCCAGGACATCGTC
ATTTTACCAACCTCCCTCCCGCACTCCCTCTTGGGCAGCCTGGACGCCTT
CGCCCGCCGCTTTGACGCCCGCGTCACCAAGCTTCCCGGTCCACAAGTGA
CGCACGTTCTGGCTCGAGCCGACGGGCGGCGGCGGGCGGAGACGCGGACG
ATCAAGTACTTGCACGGCATCCTCGCGCGCCGCTGGGTGCTGGCCCCTTC
CTGGCTGACGGGGTCTTTGGCGAAAGGGAAAGTGGAGGCGGAAATTCGAC
ACGAAATCGTGGGGGATCCGAAGGCGACGGAGCCGTCCGCGCCGACCAAA
GCCCGGTTGAGCCGATACAAGCAGATACCTCCCCTCTTTGCCGCCTACCG
GGTGGTGTTTGGGGGTGATTTCCCCCCGCCCCGGCCGACCAGACGGGATC
TGGAAAGCCTCGTGAAGGCGGGCGGCGGGCGCGTCGTGACACTCGCGGCG
TTTGAAAGGGAGGAAAGGGAGGAGGAGGAAGAGATTGGGCACAGACTGAC
CGAGGGCGGAGAGGAAGGGAGGGTGACGAGGAAAACGGTCATGATCTGCA
ATAGCCTTCCCGCCAAGGAGGCTGTGGGGGCCGTCAAGTCAGGGACCATG
ACTGTCTCCGCCTGGGCGGAAGGCGGGCGGCCGGTCGTCTCATCGGACTG
GCTTTTGGATAGCATCAGCAACTACCGAGTCATGGATTTGAAGAGATTTG
CTGTAATACGTCCCCGGGGTAGACAGGAGCAGGGAAACACATGA

Synonyms

Publications