EWM27528.1, cds3113 (CDS) Nannochloropsis gaditana

Overview
NameEWM27528.1
Unique Namecds3113
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:767472..769115 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27528.1
Productbrca1-associated ring domain protein 1
Orig transcript idgnl|cribi|Naga_100015g38.6344.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:767472..769115 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006974cellular response to DNA damage stimulus
GO:0006281DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR031099BRCA1-associated
IPR001357BRCT_dom
Homology
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|585109795|gb|EWM27528.1| (brca1-associated ring domain protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 1083.55 bits (2801), Expect = 0.000e+0
Identity = 547/547 (100.00%), Postives = 547/547 (100.00%), Query Frame = 0
Query:    1 MLKRGTSGENDEGAGTRAKDGKEEEEEGEEAEEEEDSDGEPGGRLRRRVPPVPFVVGDTVEVAARTWPGINKEGGVARIVAVHGAEGGREGGAEGGREGGAEGGCITYDVKYMLSGGEKRVKGKYISSANVLVAPTAAECRPDGAGRGRGGGGGRAGGRAAWTEHAPPVPAKGGETTEGRVHVHTSRGTVGGGHASPSPFSSRKRPADAMTADAASSPPSPSRPSTTPSHSKPSAVLSPLQWALRPALSFSASSSPLPSRPQAPCLPSRPSQASAPRRLPEPDPDPADRDSYRTHPQDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMICNSLPAKEAVGAVKSGTMTVSAWAEGGRPVVSSDWLLDSISNYRVMDLKRFAVIRPRGRQEQGNT 547
            MLKRGTSGENDEGAGTRAKDGKEEEEEGEEAEEEEDSDGEPGGRLRRRVPPVPFVVGDTVEVAARTWPGINKEGGVARIVAVHGAEGGREGGAEGGREGGAEGGCITYDVKYMLSGGEKRVKGKYISSANVLVAPTAAECRPDGAGRGRGGGGGRAGGRAAWTEHAPPVPAKGGETTEGRVHVHTSRGTVGGGHASPSPFSSRKRPADAMTADAASSPPSPSRPSTTPSHSKPSAVLSPLQWALRPALSFSASSSPLPSRPQAPCLPSRPSQASAPRRLPEPDPDPADRDSYRTHPQDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMICNSLPAKEAVGAVKSGTMTVSAWAEGGRPVVSSDWLLDSISNYRVMDLKRFAVIRPRGRQEQGNT
Sbjct:    1 MLKRGTSGENDEGAGTRAKDGKEEEEEGEEAEEEEDSDGEPGGRLRRRVPPVPFVVGDTVEVAARTWPGINKEGGVARIVAVHGAEGGREGGAEGGREGGAEGGCITYDVKYMLSGGEKRVKGKYISSANVLVAPTAAECRPDGAGRGRGGGGGRAGGRAAWTEHAPPVPAKGGETTEGRVHVHTSRGTVGGGHASPSPFSSRKRPADAMTADAASSPPSPSRPSTTPSHSKPSAVLSPLQWALRPALSFSASSSPLPSRPQAPCLPSRPSQASAPRRLPEPDPDPADRDSYRTHPQDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMICNSLPAKEAVGAVKSGTMTVSAWAEGGRPVVSSDWLLDSISNYRVMDLKRFAVIRPRGRQEQGNT 547          
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|405958102|gb|EKC24263.1| (BRCA1-associated RING domain protein 1 [Crassostrea gigas])

HSP 1 Score: 95.1301 bits (235), Expect = 5.387e-17
Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 0
Query:  300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVV 446
              L T L      +L   A +  ARV +   P+VTHV++  +       RTIKYL G+L+ RW++   W+  SL  G    E   EI G     +  A  K R++R KQ+P LF   +  F G F  P P R DL SLVK GGG+V+
Sbjct:  354 CFLGTGLSREQRSTLQKCASKLQARVVEGFCPEVTHVVSGCNNEGLCP-RTIKYLQGVLSGRWIVNMEWVEMSLEYGSKLVEEAFEIPGTSTDPQSGAAQKGRINRQKQLPGLFDGCQFYFYGHFEYPTPDREDLVSLVKLGGGQVI 499          
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|1176082702|ref|XP_020611513.1| (BRCA1-associated RING domain protein 1-like isoform X1 [Orbicella faveolata])

HSP 1 Score: 95.5153 bits (236), Expect = 5.774e-17
Identity = 65/243 (26.75%), Postives = 111/243 (45.68%), Query Frame = 0
Query:  300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMIC----NSLPAKEAVGAVKSGTMTVSAWAEGGRPVVSSD--------WLLDSISNYRVMDL 530
            V+L T L      +L   A    A +       VTH++   + ++    RTIKYL+G+L  +W+++  W+   L       E  HE+ G   A     P +AR++  KQ+P LF   +  F G+F PP P++ DL  +VK GGG++++     RE + + +E   RL    E  + +   V       ++ P  +     +   +   + AE    +  +D        WL+D  SN+ ++DL
Sbjct:  518 VLLATGLNSEQKANLQKCASILMASIVNEFSLSVTHIVTATNNKKGICPRTIKYLNGVLTGKWIVSYEWIVKCLRHKTWADEAPHEVKGTNDAA-VDTPRRARINSVKQLPGLFDGCQFYFSGEFCPPHPSKEDLVQMVKYGGGKILS-----REPKPDIDE-SLRLPTTRESNKASNNAVTFAPIAYHANPCSKQYRCTR--YVIYDSLAEKKPHIRHTDSVCSMPSTWLMDCASNFAILDL 751          
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|1176082704|ref|XP_020611514.1| (BRCA1-associated RING domain protein 1-like isoform X2 [Orbicella faveolata])

HSP 1 Score: 95.5153 bits (236), Expect = 5.877e-17
Identity = 65/243 (26.75%), Postives = 111/243 (45.68%), Query Frame = 0
Query:  300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMIC----NSLPAKEAVGAVKSGTMTVSAWAEGGRPVVSSD--------WLLDSISNYRVMDL 530
            V+L T L      +L   A    A +       VTH++   + ++    RTIKYL+G+L  +W+++  W+   L       E  HE+ G   A     P +AR++  KQ+P LF   +  F G+F PP P++ DL  +VK GGG++++     RE + + +E   RL    E  + +   V       ++ P  +     +   +   + AE    +  +D        WL+D  SN+ ++DL
Sbjct:  518 VLLATGLNSEQKANLQKCASILMASIVNEFSLSVTHIVTATNNKKGICPRTIKYLNGVLTGKWIVSYEWIIKCLRHKTWADEAPHEVKGTNDAA-VDTPRRARINSLKQLPGLFDGCQFYFSGEFCPPHPSKEDLVQMVKYGGGKILS-----REPKPDIDE-SLRLPTTRESNKASNNAVTFAPIAYHANPCSKQYRCTR--YVIYDSLAEKKPHIRHTDSVCSMPSTWLMDCASNFAILDL 751          
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|762167393|ref|XP_011422027.1| (PREDICTED: BRCA1-associated RING domain protein 1 isoform X2 [Crassostrea gigas])

HSP 1 Score: 95.1301 bits (235), Expect = 6.185e-17
Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 0
Query:  300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVV 446
              L T L      +L   A +  ARV +   P+VTHV++  +       RTIKYL G+L+ RW++   W+  SL  G    E   EI G     +  A  K R++R KQ+P LF   +  F G F  P P R DL SLVK GGG+V+
Sbjct:  425 CFLGTGLSREQRSTLQKCASKLQARVVEGFCPEVTHVVSGCNNEGLCP-RTIKYLQGVLSGRWIVNMEWVEMSLEYGSKLVEEAFEIPGTSTDPQSGAAQKGRINRQKQLPGLFDGCQFYFYGHFEYPTPDREDLVSLVKLGGGQVI 570          
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|762167395|ref|XP_011422028.1| (PREDICTED: BRCA1-associated RING domain protein 1 isoform X3 [Crassostrea gigas])

HSP 1 Score: 95.1301 bits (235), Expect = 6.663e-17
Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 0
Query:  300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVV 446
              L T L      +L   A +  ARV +   P+VTHV++  +       RTIKYL G+L+ RW++   W+  SL  G    E   EI G     +  A  K R++R KQ+P LF   +  F G F  P P R DL SLVK GGG+V+
Sbjct:  418 CFLGTGLSREQRSTLQKCASKLQARVVEGFCPEVTHVVSGCNNEGLCP-RTIKYLQGVLSGRWIVNMEWVEMSLEYGSKLVEEAFEIPGTSTDPQSGAAQKGRINRQKQLPGLFDGCQFYFYGHFEYPTPDREDLVSLVKLGGGQVI 563          
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|762167391|ref|XP_011422026.1| (PREDICTED: BRCA1-associated RING domain protein 1 isoform X1 [Crassostrea gigas])

HSP 1 Score: 95.1301 bits (235), Expect = 7.064e-17
Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 0
Query:  300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVV 446
              L T L      +L   A +  ARV +   P+VTHV++  +       RTIKYL G+L+ RW++   W+  SL  G    E   EI G     +  A  K R++R KQ+P LF   +  F G F  P P R DL SLVK GGG+V+
Sbjct:  439 CFLGTGLSREQRSTLQKCASKLQARVVEGFCPEVTHVVSGCNNEGLCP-RTIKYLQGVLSGRWIVNMEWVEMSLEYGSKLVEEAFEIPGTSTDPQSGAAQKGRINRQKQLPGLFDGCQFYFYGHFEYPTPDREDLVSLVKLGGGQVI 584          
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|1067096062|ref|XP_018009973.1| (PREDICTED: BRCA1-associated RING domain protein 1-like [Hyalella azteca])

HSP 1 Score: 94.7449 bits (234), Expect = 9.041e-17
Identity = 57/236 (24.15%), Postives = 111/236 (47.03%), Query Frame = 0
Query:  297 QDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPR-PTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMI--CNSLP-AKEAVGAVKSGTMTVSAWAEGGRPVVSSDWLLDSISNYRVM 528
              IV+  ++L      +L AFAR F  R+     P+V+HV+   +G R    RT K++ G++A +W+++  W+   + +  +      E++G  +     AP +AR++    +P LF+   +   G+F     P +RDLESLV+AGG +++          E E+ + +    G    R +   + +   ++ P  K  +  +KS T++               WL+D + ++ ++
Sbjct:  392 HSIVVTSSNLSAEHSKTLQAFARLFRIRLVNEFCPEVSHVVVGCEGSRLVCLRTAKFMMGVVAGKWIVSHEWIEACMQQKTIVCPEPFEVLGSSQNAASGAPLRARVNASNMLPGLFSGCHIFLHGNFKSENCPCKRDLESLVRAGGAKLLVREPKPESIPEIEKTVPYHAAVGSPLARCSHYIIYLEGSDTEPKLKYDMAHIKSLTLS---------------WLIDCVDHFELL 612          
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|727603996|ref|XP_010475041.1| (PREDICTED: BRCA1-associated RING domain protein 1-like isoform X2 [Camelina sativa])

HSP 1 Score: 94.7449 bits (234), Expect = 9.538e-17
Identity = 77/275 (28.00%), Postives = 123/275 (44.73%), Query Frame = 0
Query:  266 LPSRPSQASAPRRLPEPDPDPADRDSYRTHP---QDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMICNSLPAKEAVGAVKSGTMTVSAW----------AEGGRPVVSSDWLLDSISNYRV 527
             P+  S     R  P P   PA+  S    P   +D+V+  ++L  S    +++ A +F+A +++   P VTHV+A  D  + A TRT+K L GIL  +W++   W+  SL   +   E   EI  D +  +   P  ARL      P LF   +  F GDF   +  + DL++LVK  GG V+            E+E+G    E        R  +++ N  P    +G      +T+  W          ++ G  +V   WLL+SI+ Y++
Sbjct:  453 FPNEKSGHRVSRAEPLPKRTPAELCSLEKTPAITKDLVLCGSALSKSDKNLMESLAVKFNATISRYWNPNVTHVIASTD-EKGACTRTLKVLMGILNGKWIINADWMKASLEASEPVDEEAFEIHLDSQGCQ-DGPKAARLGAASNKPKLFDGLKFYFFGDFY--KGYKEDLQNLVKVAGGTVLN----------TEDELG---AESSNSADDQRSPIVVYNIDPP---IGCALGEEVTI-IWQRANDAEALASQTGSRLVGHTWLLESIAGYKI 706          
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|727603994|ref|XP_010475040.1| (PREDICTED: BRCA1-associated RING domain protein 1-like isoform X1 [Camelina sativa])

HSP 1 Score: 94.7449 bits (234), Expect = 9.983e-17
Identity = 77/275 (28.00%), Postives = 123/275 (44.73%), Query Frame = 0
Query:  266 LPSRPSQASAPRRLPEPDPDPADRDSYRTHP---QDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMICNSLPAKEAVGAVKSGTMTVSAW----------AEGGRPVVSSDWLLDSISNYRV 527
             P+  S     R  P P   PA+  S    P   +D+V+  ++L  S    +++ A +F+A +++   P VTHV+A  D  + A TRT+K L GIL  +W++   W+  SL   +   E   EI  D +  +   P  ARL      P LF   +  F GDF   +  + DL++LVK  GG V+            E+E+G    E        R  +++ N  P    +G      +T+  W          ++ G  +V   WLL+SI+ Y++
Sbjct:  454 FPNEKSGHRVSRAEPLPKRTPAELCSLEKTPAITKDLVLCGSALSKSDKNLMESLAVKFNATISRYWNPNVTHVIASTD-EKGACTRTLKVLMGILNGKWIINADWMKASLEASEPVDEEAFEIHLDSQGCQ-DGPKAARLGAASNKPKLFDGLKFYFFGDFY--KGYKEDLQNLVKVAGGTVLN----------TEDELG---AESSNSADDQRSPIVVYNIDPP---IGCALGEEVTI-IWQRANDAEALASQTGSRLVGHTWLLESIAGYKI 707          
The following BLAST results are available for this feature:
BLAST of EWM27528.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109795|gb|EWM27528.1|0.000e+0100.00brca1-associated ring domain protein 1 [Nannochlor... [more]
gi|405958102|gb|EKC24263.1|5.387e-1738.10BRCA1-associated RING domain protein 1 [Crassostre... [more]
gi|1176082702|ref|XP_020611513.1|5.774e-1726.75BRCA1-associated RING domain protein 1-like isofor... [more]
gi|1176082704|ref|XP_020611514.1|5.877e-1726.75BRCA1-associated RING domain protein 1-like isofor... [more]
gi|762167393|ref|XP_011422027.1|6.185e-1738.10PREDICTED: BRCA1-associated RING domain protein 1 ... [more]
gi|762167395|ref|XP_011422028.1|6.663e-1738.10PREDICTED: BRCA1-associated RING domain protein 1 ... [more]
gi|762167391|ref|XP_011422026.1|7.064e-1738.10PREDICTED: BRCA1-associated RING domain protein 1 ... [more]
gi|1067096062|ref|XP_018009973.1|9.041e-1724.15PREDICTED: BRCA1-associated RING domain protein 1-... [more]
gi|727603996|ref|XP_010475041.1|9.538e-1728.00PREDICTED: BRCA1-associated RING domain protein 1-... [more]
gi|727603994|ref|XP_010475040.1|9.983e-1728.00PREDICTED: BRCA1-associated RING domain protein 1-... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3121rna3121Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications