EWM27528.1, cds3113 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|585109795|gb|EWM27528.1| (brca1-associated ring domain protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 1083.55 bits (2801), Expect = 0.000e+0 Identity = 547/547 (100.00%), Postives = 547/547 (100.00%), Query Frame = 0
Query: 1 MLKRGTSGENDEGAGTRAKDGKEEEEEGEEAEEEEDSDGEPGGRLRRRVPPVPFVVGDTVEVAARTWPGINKEGGVARIVAVHGAEGGREGGAEGGREGGAEGGCITYDVKYMLSGGEKRVKGKYISSANVLVAPTAAECRPDGAGRGRGGGGGRAGGRAAWTEHAPPVPAKGGETTEGRVHVHTSRGTVGGGHASPSPFSSRKRPADAMTADAASSPPSPSRPSTTPSHSKPSAVLSPLQWALRPALSFSASSSPLPSRPQAPCLPSRPSQASAPRRLPEPDPDPADRDSYRTHPQDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMICNSLPAKEAVGAVKSGTMTVSAWAEGGRPVVSSDWLLDSISNYRVMDLKRFAVIRPRGRQEQGNT 547
MLKRGTSGENDEGAGTRAKDGKEEEEEGEEAEEEEDSDGEPGGRLRRRVPPVPFVVGDTVEVAARTWPGINKEGGVARIVAVHGAEGGREGGAEGGREGGAEGGCITYDVKYMLSGGEKRVKGKYISSANVLVAPTAAECRPDGAGRGRGGGGGRAGGRAAWTEHAPPVPAKGGETTEGRVHVHTSRGTVGGGHASPSPFSSRKRPADAMTADAASSPPSPSRPSTTPSHSKPSAVLSPLQWALRPALSFSASSSPLPSRPQAPCLPSRPSQASAPRRLPEPDPDPADRDSYRTHPQDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMICNSLPAKEAVGAVKSGTMTVSAWAEGGRPVVSSDWLLDSISNYRVMDLKRFAVIRPRGRQEQGNT
Sbjct: 1 MLKRGTSGENDEGAGTRAKDGKEEEEEGEEAEEEEDSDGEPGGRLRRRVPPVPFVVGDTVEVAARTWPGINKEGGVARIVAVHGAEGGREGGAEGGREGGAEGGCITYDVKYMLSGGEKRVKGKYISSANVLVAPTAAECRPDGAGRGRGGGGGRAGGRAAWTEHAPPVPAKGGETTEGRVHVHTSRGTVGGGHASPSPFSSRKRPADAMTADAASSPPSPSRPSTTPSHSKPSAVLSPLQWALRPALSFSASSSPLPSRPQAPCLPSRPSQASAPRRLPEPDPDPADRDSYRTHPQDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMICNSLPAKEAVGAVKSGTMTVSAWAEGGRPVVSSDWLLDSISNYRVMDLKRFAVIRPRGRQEQGNT 547
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|405958102|gb|EKC24263.1| (BRCA1-associated RING domain protein 1 [Crassostrea gigas]) HSP 1 Score: 95.1301 bits (235), Expect = 5.387e-17 Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 0
Query: 300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVV 446
L T L +L A + ARV + P+VTHV++ + RTIKYL G+L+ RW++ W+ SL G E EI G + A K R++R KQ+P LF + F G F P P R DL SLVK GGG+V+
Sbjct: 354 CFLGTGLSREQRSTLQKCASKLQARVVEGFCPEVTHVVSGCNNEGLCP-RTIKYLQGVLSGRWIVNMEWVEMSLEYGSKLVEEAFEIPGTSTDPQSGAAQKGRINRQKQLPGLFDGCQFYFYGHFEYPTPDREDLVSLVKLGGGQVI 499
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|1176082702|ref|XP_020611513.1| (BRCA1-associated RING domain protein 1-like isoform X1 [Orbicella faveolata]) HSP 1 Score: 95.5153 bits (236), Expect = 5.774e-17 Identity = 65/243 (26.75%), Postives = 111/243 (45.68%), Query Frame = 0
Query: 300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMIC----NSLPAKEAVGAVKSGTMTVSAWAEGGRPVVSSD--------WLLDSISNYRVMDL 530
V+L T L +L A A + VTH++ + ++ RTIKYL+G+L +W+++ W+ L E HE+ G A P +AR++ KQ+P LF + F G+F PP P++ DL +VK GGG++++ RE + + +E RL E + + V ++ P + + + + AE + +D WL+D SN+ ++DL
Sbjct: 518 VLLATGLNSEQKANLQKCASILMASIVNEFSLSVTHIVTATNNKKGICPRTIKYLNGVLTGKWIVSYEWIVKCLRHKTWADEAPHEVKGTNDAA-VDTPRRARINSVKQLPGLFDGCQFYFSGEFCPPHPSKEDLVQMVKYGGGKILS-----REPKPDIDE-SLRLPTTRESNKASNNAVTFAPIAYHANPCSKQYRCTR--YVIYDSLAEKKPHIRHTDSVCSMPSTWLMDCASNFAILDL 751
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|1176082704|ref|XP_020611514.1| (BRCA1-associated RING domain protein 1-like isoform X2 [Orbicella faveolata]) HSP 1 Score: 95.5153 bits (236), Expect = 5.877e-17 Identity = 65/243 (26.75%), Postives = 111/243 (45.68%), Query Frame = 0
Query: 300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMIC----NSLPAKEAVGAVKSGTMTVSAWAEGGRPVVSSD--------WLLDSISNYRVMDL 530
V+L T L +L A A + VTH++ + ++ RTIKYL+G+L +W+++ W+ L E HE+ G A P +AR++ KQ+P LF + F G+F PP P++ DL +VK GGG++++ RE + + +E RL E + + V ++ P + + + + AE + +D WL+D SN+ ++DL
Sbjct: 518 VLLATGLNSEQKANLQKCASILMASIVNEFSLSVTHIVTATNNKKGICPRTIKYLNGVLTGKWIVSYEWIIKCLRHKTWADEAPHEVKGTNDAA-VDTPRRARINSLKQLPGLFDGCQFYFSGEFCPPHPSKEDLVQMVKYGGGKILS-----REPKPDIDE-SLRLPTTRESNKASNNAVTFAPIAYHANPCSKQYRCTR--YVIYDSLAEKKPHIRHTDSVCSMPSTWLMDCASNFAILDL 751
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|762167393|ref|XP_011422027.1| (PREDICTED: BRCA1-associated RING domain protein 1 isoform X2 [Crassostrea gigas]) HSP 1 Score: 95.1301 bits (235), Expect = 6.185e-17 Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 0
Query: 300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVV 446
L T L +L A + ARV + P+VTHV++ + RTIKYL G+L+ RW++ W+ SL G E EI G + A K R++R KQ+P LF + F G F P P R DL SLVK GGG+V+
Sbjct: 425 CFLGTGLSREQRSTLQKCASKLQARVVEGFCPEVTHVVSGCNNEGLCP-RTIKYLQGVLSGRWIVNMEWVEMSLEYGSKLVEEAFEIPGTSTDPQSGAAQKGRINRQKQLPGLFDGCQFYFYGHFEYPTPDREDLVSLVKLGGGQVI 570
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|762167395|ref|XP_011422028.1| (PREDICTED: BRCA1-associated RING domain protein 1 isoform X3 [Crassostrea gigas]) HSP 1 Score: 95.1301 bits (235), Expect = 6.663e-17 Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 0
Query: 300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVV 446
L T L +L A + ARV + P+VTHV++ + RTIKYL G+L+ RW++ W+ SL G E EI G + A K R++R KQ+P LF + F G F P P R DL SLVK GGG+V+
Sbjct: 418 CFLGTGLSREQRSTLQKCASKLQARVVEGFCPEVTHVVSGCNNEGLCP-RTIKYLQGVLSGRWIVNMEWVEMSLEYGSKLVEEAFEIPGTSTDPQSGAAQKGRINRQKQLPGLFDGCQFYFYGHFEYPTPDREDLVSLVKLGGGQVI 563
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|762167391|ref|XP_011422026.1| (PREDICTED: BRCA1-associated RING domain protein 1 isoform X1 [Crassostrea gigas]) HSP 1 Score: 95.1301 bits (235), Expect = 7.064e-17 Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 0
Query: 300 VILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVV 446
L T L +L A + ARV + P+VTHV++ + RTIKYL G+L+ RW++ W+ SL G E EI G + A K R++R KQ+P LF + F G F P P R DL SLVK GGG+V+
Sbjct: 439 CFLGTGLSREQRSTLQKCASKLQARVVEGFCPEVTHVVSGCNNEGLCP-RTIKYLQGVLSGRWIVNMEWVEMSLEYGSKLVEEAFEIPGTSTDPQSGAAQKGRINRQKQLPGLFDGCQFYFYGHFEYPTPDREDLVSLVKLGGGQVI 584
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|1067096062|ref|XP_018009973.1| (PREDICTED: BRCA1-associated RING domain protein 1-like [Hyalella azteca]) HSP 1 Score: 94.7449 bits (234), Expect = 9.041e-17 Identity = 57/236 (24.15%), Postives = 111/236 (47.03%), Query Frame = 0
Query: 297 QDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPR-PTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMI--CNSLP-AKEAVGAVKSGTMTVSAWAEGGRPVVSSDWLLDSISNYRVM 528
IV+ ++L +L AFAR F R+ P+V+HV+ +G R RT K++ G++A +W+++ W+ + + + E++G + AP +AR++ +P LF+ + G+F P +RDLESLV+AGG +++ E E+ + + G R + + + ++ P K + +KS T++ WL+D + ++ ++
Sbjct: 392 HSIVVTSSNLSAEHSKTLQAFARLFRIRLVNEFCPEVSHVVVGCEGSRLVCLRTAKFMMGVVAGKWIVSHEWIEACMQQKTIVCPEPFEVLGSSQNAASGAPLRARVNASNMLPGLFSGCHIFLHGNFKSENCPCKRDLESLVRAGGAKLLVREPKPESIPEIEKTVPYHAAVGSPLARCSHYIIYLEGSDTEPKLKYDMAHIKSLTLS---------------WLIDCVDHFELL 612
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|727603996|ref|XP_010475041.1| (PREDICTED: BRCA1-associated RING domain protein 1-like isoform X2 [Camelina sativa]) HSP 1 Score: 94.7449 bits (234), Expect = 9.538e-17 Identity = 77/275 (28.00%), Postives = 123/275 (44.73%), Query Frame = 0
Query: 266 LPSRPSQASAPRRLPEPDPDPADRDSYRTHP---QDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMICNSLPAKEAVGAVKSGTMTVSAW----------AEGGRPVVSSDWLLDSISNYRV 527
P+ S R P P PA+ S P +D+V+ ++L S +++ A +F+A +++ P VTHV+A D + A TRT+K L GIL +W++ W+ SL + E EI D + + P ARL P LF + F GDF + + DL++LVK GG V+ E+E+G E R +++ N P +G +T+ W ++ G +V WLL+SI+ Y++
Sbjct: 453 FPNEKSGHRVSRAEPLPKRTPAELCSLEKTPAITKDLVLCGSALSKSDKNLMESLAVKFNATISRYWNPNVTHVIASTD-EKGACTRTLKVLMGILNGKWIINADWMKASLEASEPVDEEAFEIHLDSQGCQ-DGPKAARLGAASNKPKLFDGLKFYFFGDFY--KGYKEDLQNLVKVAGGTVLN----------TEDELG---AESSNSADDQRSPIVVYNIDPP---IGCALGEEVTI-IWQRANDAEALASQTGSRLVGHTWLLESIAGYKI 706
BLAST of EWM27528.1 vs. NCBI_GenBank
Match: gi|727603994|ref|XP_010475040.1| (PREDICTED: BRCA1-associated RING domain protein 1-like isoform X1 [Camelina sativa]) HSP 1 Score: 94.7449 bits (234), Expect = 9.983e-17 Identity = 77/275 (28.00%), Postives = 123/275 (44.73%), Query Frame = 0
Query: 266 LPSRPSQASAPRRLPEPDPDPADRDSYRTHP---QDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGRRRAETRTIKYLHGILARRWVLAPSWLTGSLAKGKVEAEIRHEIVGDPKATEPSAPTKARLSRYKQIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGGGRVVTLAAFEREEREEEEEIGHRLTEGGEEGRVTRKTVMICNSLPAKEAVGAVKSGTMTVSAW----------AEGGRPVVSSDWLLDSISNYRV 527
P+ S R P P PA+ S P +D+V+ ++L S +++ A +F+A +++ P VTHV+A D + A TRT+K L GIL +W++ W+ SL + E EI D + + P ARL P LF + F GDF + + DL++LVK GG V+ E+E+G E R +++ N P +G +T+ W ++ G +V WLL+SI+ Y++
Sbjct: 454 FPNEKSGHRVSRAEPLPKRTPAELCSLEKTPAITKDLVLCGSALSKSDKNLMESLAVKFNATISRYWNPNVTHVIASTD-EKGACTRTLKVLMGILNGKWIINADWMKASLEASEPVDEEAFEIHLDSQGCQ-DGPKAARLGAASNKPKLFDGLKFYFFGDFY--KGYKEDLQNLVKVAGGTVLN----------TEDELG---AESSNSADDQRSPIVVYNIDPP---IGCALGEEVTI-IWQRANDAEALASQTGSRLVGHTWLLESIAGYKI 707 The following BLAST results are available for this feature:
BLAST of EWM27528.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|