rna3119, rna3119 (mRNA) Nannochloropsis gaditana

Overview
Namerna3119
Unique Namerna3119
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2265
Alignment locationCM002460.1:763827..764203 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100015g42.6398.mrna
Orig protein idgnl|cribi|Naga_100015g42.6398
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:763827..764203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100015g42gene2997Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3119rna3119-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27582.1cds3111Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3119 ID=rna3119|Name=rna3119|organism=Nannochloropsis gaditana|type=mRNA|length=2265bp
ATGGAAATCCTGCCAACGCAAAGAGCGACAAGAGCTTCAGATGTGCTAGC
GCCATCTGAACAAAGGGAGGACTCGGTTAATGTGAAATTGACAGCTGGAG
AACAAGGGATTTGTGTAGCCTCTAATATTTGCCCTGCGGAGACCTGTATG
GAGGCGGAAGGAGGAATATTACCCTTAACCTCCAAGAAAGACCATGCCAC
CGTCCGCCTTGAAACCTCCAAGCCTGGTGAACCTTTGAAACTAAAACGAC
TTCTGGCAGTGGATCTTCCCGTGCTGTGCTCACGGCCGATGACGGCAGTA
AGCATGCTCGGAGGGTTAGACAGGCTGAGTGCAGCTTGCACAGGGAAGAC
CCGCAAGCTCCAATTCTCATTCCGACCCGGCGACGAACTAAGCATTCCCA
TCTCCTCTCAGCCCAAAATACCAGCCTCTAGGCTCCTGCTGCGTGTGCGT
GTCCGCAGAAAGCAAATTACGGGCCAGCGTTATGCGGTTCATACCGAGGT
CGTGGGTACTGTGAGCACCACCTTCCAATTTCGGTGTTTGGCGGACTTCC
AGTACTTGACCACTCAAGCATTTTTGCCTCCGGGCACCCCAGACCTGGTT
TCTCAGGCCCGCTTGGAGATCGTCCCTCCTTCCTTTATCCCGGTAGCACA
CGCAGGGAACTACGCGTACGTAAGCCTGAAATCTTCGGCGTTAGCCTCCC
ACGACACGGCGCGACGGCAAGGGGTTGTTATCCGGTACGGGTGCCCCATC
CCCAAAGCCCCCCCGGCCATGTTGGTGAACCGGCCCCGGCGGCGGTCGGA
GAAGTACGGGCAGGTGCTGGAAAAATTGCAGGCGCTTTTCGATCGGGTGA
GTGGGGAGGGTACGCGACGGAAGGGAAGGGGATGCCCGTGCAAGAGACGA
GCATGCTTGCAATCATGGACAAGGACCATTCATGCCTTCTCGGCTTCGGC
CCCCAACTTGCCCGTGCCACAGGAACGTGGGGGCCGGGAAATGTGGCAAC
GGAAGGCGCTCGAGTCCCAGTTCGAAAAGGAGGGCCTCCAGCACGCCTTT
TTGGAGCTCCTGCGCGTGGTCGCCTACAACATGTCGAACGGGCCCTGGCG
GGGCCTGTGGGTCCGGTACGGGTACGACCCCAGCCTGGACCCCGTGGCTC
GCTTCTACCAGGCCCTGGATGTACGCTGGAAGGAAGCGGGCTTGGAGAAG
GTAAAGCGGGCCTACGAGCAGGTGCGGCGGAAAGGGGAGGGGAAAAGGGG
GGACGGGGCCGCGGCGAAGGAGGAGGAAGAGGCGGGCGCCCAGGATGGGG
AGGGAAAGGAAGGAGAAGAGGTAGCCGGCCCGCAAGCTGGAAGGACAGGG
TCGGAGCTCCAGCTCTTCGGCTTGCCCGTGCGTCGGCAGATGGTCTTCCA
GCTCTGCGACTTGGGCGGAGCGTCTTTGCAGGAGCTCGTGCTAGGGTTGC
CGCGCAAGGCCCTCTGTTCCCCCCAAGGGGGCTGGTTTCGACTCAGCGAC
CTGAACAGGCTCCGCGTCAGGATCAAGCGATACTTGAGCTCCCGGGTGGC
GGAGTGTGTGAGGACGGGGAGCCTGGAGGCGGTGGTGGGGCCGGAGGAGG
GCGCGCTCTCCTCGTCCGCGATGATAAAAGAGGCGGAGGCTCGGAGGGGG
AGGGAGGTTGTGTGGCGGGAGGATGACTTTAAGAAAGGGGCCGGGGTCGA
CAGAGATCAGGAAGGGTGGCCCGAGCGACAGGGCGGGAAGGCAATGACGA
GGAGGAGTAGCAAGCGTACATCGGCAGGGGGGGGAGGGAGGAGAAGCGCT
GAAGTCATGGAGGGGGAAGGCGGGGTGAGGAGGAATGTAAAGAGGGCGCG
ACGGGCAGCCCTGAAGCAGGCAGAGGAAAGGCAGGACGAGGTGAGCGAAT
GGGAGGACGACAGGGAGCTGGACGGTGGAGAAGGCGGCAGCTTAAGGGGG
GGGCAGGAGGATGAGGAGGGTGAAGAGGACGAGGAGAGGGGGTTGAGACA
TTTGGGGGATCTCCTAGGCCAACCCATGGGCGGTATAAAAAGCTCGCGAG
GAGATAGAAGAACGGCGAGGGCGGGCAGACAGTCTAGCGGGGGGCGCGTG
GAAGAGGTGGAAGATACAGATGAGCTTGGAGGCAACTTTGTCATTCCCCT
CACAGCGGGAGAAATGGAAAACGCGAGCTCGATTCGCTTGCTCGGAGGTT
ACCAAGGTGGAGACTATTCTTCCTCGTCGTCTACTGAGGAAGATGAAGGA
GCTGAATCTGACTGA
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protein sequence of rna3119

>rna3119-protein ID=rna3119-protein|Name=rna3119|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MVHVRHLSGRQRDRFCAFSCAGEGQERRKEKNLSSDFQPEKQELPIISVD
VVTVIVTRKSWHEFTLSFGDTTRRRNKRLREQSEESEDTKITFQIVYYYF
DWLVVLSMSTF
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mRNA from alignment at CM002460.1:763827..764203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3119 ID=rna3119|Name=rna3119|organism=Nannochloropsis gaditana|type=mRNA|length=377bp|location=Sequence derived from alignment at CM002460.1:763827..764203- (Nannochloropsis gaditana)
ATGGTCCATGTGCGGCATTTGAGCGGACGGCAACGTGATAGATTCTGTGC
ATTTAGTTGTGCTGGAGAAGGTCAAGAACGGAGGAAGGAAAAGAATCTTT
CTTCTGACTTTCAACCAGAAAAAGTGATTGCAAAAGAAGATTGATGGCTC
AATACCAATTGTAGCAAGAACTTCCAATCATCAGTGTTGATGTAGTTACT
GTGATAGTGACAAGAAAGTCATGGCATGAGTTTACGCTCTCTTTTGGTGA
CACGACGCGCAGGAGAAACAAACGACTTCGAGAGCAAAGCGAAGAATCGG
AAGACACCAAAATTACATTTCAGATTGTGTATTATTACTTTGATTGGCTT
GTTGTTCTTTCTATGAGTACTTTTTAA
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Coding sequence (CDS) from alignment at CM002460.1:763827..764203-

>rna3119 ID=rna3119|Name=rna3119|organism=Nannochloropsis gaditana|type=CDS|length=672bp|location=Sequence derived from alignment at CM002460.1:763827..764203- (Nannochloropsis gaditana)
CAAGAACTTCCAATCATCAGTGTTGATGTAGTTACTGTGATAGTGACAAG
AAAGTCATGGCATGAGTTTACGCTCTCTTTTGGTGACACGACGCGCAGGA
GAAACAAACGACTTCGAGAGCAAAGCGAAGAATCGGAAGACACCAAAATT
ACATTTCAGATTGTGTATTATTACTTTGATTGGCTTGTTGTTCTTTCTAT
GAGTACTTTTTAAATGGTCCATGTGCGGCATTTGAGCGGACGGCAACGTG
ATAGATTCTGTGCATTTAGTTGTGCTGGAGAAGGTCAAGAACGGAGGAAG
GAAAAGAATCTTTCTTCTGACTTTCAACCAGAAAAACAAGAACTTCCAAT
CATCAGTGTTGATGTAGTTACTGTGATAGTGACAAGAAAGTCATGGCATG
AGTTTACGCTCTCTTTTGGTGACACGACGCGCAGGAGAAACAAACGACTT
CGAGAGCAAAGCGAAGAATCGGAAGACACCAAAATTACATTTCAGATTGT
GTATTATTACTTTGATTGGCTTGTTGTTCTTTCTATGAGTACTTTTTAAA
TGGTCCATGTGCGGCATTTGAGCGGACGGCAACGTGATAGATTCTGTGCA
TTTAGTTGTGCTGGAGAAGGTCAAGAACGGAGGAAGGAAAAGAATCTTTC
TTCTGACTTTCAACCAGAAAAA
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Synonyms
Publications