EWM27582.1, cds3111 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27582.1
Unique Name	cds3111
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002460.1:764081..764203 -
Alignment location	CM002460.1:763827..764039 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27582.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100015g42.6398.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:764081..764203 -
CM002460.1	supercontig	CM002460.1:763827..764039 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM27582.1 vs. NCBI_GenBank
Match: gi|585109849|gb|EWM27582.1| (hypothetical protein Naga_100015g42 [Nannochloropsis gaditana])

HSP 1 Score: 230.335 bits (586), Expect = 1.058e-76
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query:    1 MVHVRHLSGRQRDRFCAFSCAGEGQERRKEKNLSSDFQPEKQELPIISVDVVTVIVTRKSWHEFTLSFGDTTRRRNKRLREQSEESEDTKITFQIVYYYFDWLVVLSMSTF 111
            MVHVRHLSGRQRDRFCAFSCAGEGQERRKEKNLSSDFQPEKQELPIISVDVVTVIVTRKSWHEFTLSFGDTTRRRNKRLREQSEESEDTKITFQIVYYYFDWLVVLSMSTF
Sbjct:    1 MVHVRHLSGRQRDRFCAFSCAGEGQERRKEKNLSSDFQPEKQELPIISVDVVTVIVTRKSWHEFTLSFGDTTRRRNKRLREQSEESEDTKITFQIVYYYFDWLVVLSMSTF 111

The following BLAST results are available for this feature:

BLAST of EWM27582.1 vs. NCBI_GenBank

BLAST of EWM27582.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585109849\|gb\|EWM27582.1\|	1.058e-76	100.00	hypothetical protein Naga_100015g42 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3119	rna3119	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications