rna3118, rna3118 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3118
Unique Name	rna3118
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	636
Alignment location	CM002460.1:761452..763716 +

Link to JBrowse

Properties


Property Name	Value
Product	general transcription factor polypeptide 5
Orig transcript id	gnl\|cribi\|Naga_100015g43.6347.mrna
Orig protein id	gnl\|cribi\|Naga_100015g43.6347
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:761452..763716 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g43	gene2996	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3118	rna3118-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27531.1	cds3110	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:761452..763716+
coding sequence from alignment at CM002460.1:761452..763716+

mRNA sequence

>rna3118 ID=rna3118|Name=rna3118|organism=Nannochloropsis gaditana|type=mRNA|length=636bp
ATGTTGCAACAGGCCTGCGCGCGCGTGGAATCCCCTATCTCACGCCGTGT
ATGTGCAGGAGCAGCTGCTGCTCGGATAACCCCGAGAATTGCTGCATTGC
GTGCAGTTTCCAAGCATTTCACATATAGCGAACGACAATTTACCTCCAGT
ACTGGCGCTTCCAACAACCCTGAAGCTCGCCCACCTTTTCCCCCTTACAC
ATTTGAAACAGCCACTGAAAAGGTTCGAAAGGCACAAGACGCTTGGAATA
CTCGAAATCCTGACGTCGTAGCTCTAGCATACACACCCGACAGCAACTGG
CGGAACCGAGACGAATTTTTCCAGGGTCGTGAGGCAATCAGAGCATTTCT
GCGGAAAAAGTGGGCGAAAGAGCGCGATTATTGTCTGATGAAAGAGCTCT
GGGGTTTTCATGGTAATCGAATCAGCGCCCGATTTGAGTACGAATGGCAC
GACGGGCAGGGTCAATGGTGGCGATCACACGGGAACGAGCAATGGGAATA
CGATGCGAAGGGCTTAATGAAGCGACGAGATGCCAGCATAAATGACGTTC
GTATCAAGGAATCCGAAAGGCGATACATTCGGAATCCTTCTACGGGTTTG
GTAGAGTATCCATTAGGCCATCCTTCCCAGACATGA

protein sequence of rna3118

>rna3118-protein ID=rna3118-protein|Name=rna3118|organism=Nannochloropsis gaditana|type=polypeptide|length=754bp
MEILPTQRATRASDVLAPSEQREDSVNVKLTAGEQGICVASNICPAETCM
EAEGGILPLTSKKDHATVRLETSKPGEPLKLKRLLAVDLPVLCSRPMTAV
SMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVR
VRRKQITGQRYAVHTEVVGTVSTTFQFRCLADFQYLTTQAFLPPGTPDLV
SQARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPI
PKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGEGTRRKGRGCPCKRR
ACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAF
LELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKEAGLEK
VKRAYEQVRRKGEGKRGDGAAAKEEEEAGAQDGEGKEGEEVAGPQAGRTG
SELQLFGLPVRRQMVFQLCDLGGASLQELVLGLPRKALCSPQGGWFRLSD
LNRLRVRIKRYLSSRVAECVRTGSLEAVVGPEEGALSSSAMIKEAEARRG
REVVWREDDFKKGAGVDRDQEGWPERQGGKAMTRRSSKRTSAGGGGRRSA
EVMEGEGGVRRNVKRARRAALKQAEERQDEVSEWEDDRELDGGEGGSLRG
GQEDEEGEEDEERGLRHLGDLLGQPMGGIKSSRGDRRTARAGRQSSGGRV
EEVEDTDELGGNFVIPLTAGEMENASSIRLLGGYQGGDYSSSSSTEEDEG
AESD

mRNA from alignment at CM002460.1:761452..763716+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3118 ID=rna3118|Name=rna3118|organism=Nannochloropsis gaditana|type=mRNA|length=2265bp|location=Sequence derived from alignment at CM002460.1:761452..763716+ (Nannochloropsis gaditana)
ATGGAAATCCTGCCAACGCAAAGAGCGACAAGAGCTTCAGATGTGCTAGC
GCCATCTGAACAAAGGGAGGACTCGGTTAATGTGAAATTGACAGCTGGAG
AACAAGGGATTTGTGTAGCCTCTAATATTTGCCCTGCGGAGACCTGtatg
gaggcggaaggaggaatatTACCCTTAACCTCCAAGAAAGACCATGCCAC
CGTCCGCCTTGAAACCTCCAAGCCTGGTGAACCTTTGAAACTAAAACGAC
TTCTGGCAGTGGATCTTCCCGTGCTGTGCTCACGGCCGATGACGGCAGTA
AGCATGCTCGGAGGGTTAGACAGGCTGAGTGCAGCTTGCACAGGGAAGAC
CCGCAAGCTCCAATTCTCATTCCGACCCGGCGACGAACTAAGCATTCCCA
TCTCCTCTCAGCCCAAAATACCAGCCTCTAGGCTCCTGCTGCGTGTGCGT
GTCCGCAGAAAGCAAATTACGGGCCAGCGTTATGCGGTTCATACCGAGGT
CGTGGGTACTGTGAGCACCACCTTCCAATTTCGGTGTTTGGCGGACTTCC
AGTACTTGACCACTCAAGCATTTTTGCCTCCGGGCACCCCAGACCTGGTT
TCTCAGGCCCGCTTGGAGatcgtccctccttcctttatCCCGGTAGCACA
CGCAGGGAACTACGCGTACGTAAGCCTGAAATCTTCGGCGTTAGCCTCCC
ACGACACGGCGCGACGGCAAGGGGTTGTTATCCGGTACGGGTGCCCCATC
CCCAAAGCCCCCCCGGCCATGTTGGTGAACCGGCCCCGGCGGCGGTCGGA
GAAGTACGGGCAGGTGCTGGAAAAATTGCAGGCGCTTTTCGATCGGGTGA
GTGGGGAGGGTACGCgacggaagggaaggggatgcCCGTGCAAGAGACGA
GCATGCTTGCAATCATGGACAAGGACCATTCATGCCTTCTCGGCTTCGGC
CCCCAACTTGCCCGTGCCACAGGAACGTGGGGGCCGGGAAATGTGGCAAC
GGAAGGCGCTCGAGTCCCAGTTCGAAAAGGAGGGCCTCCAGCACGCCTTT
TTGGAGCTCCTGCGCGTGGTCGCCTACAACATGTCGAACGGGCCCTGGCG
GGGCCTGTGGGTCCGGTACGGGTACGACCCCAGCCTGGACCCCGTGGCTC
GCTTCTACCAGGCCCTGGATGTACgctggaaggaagcgggcttGGAGAAG
GTAAAGCGGGCCTACGAGCAGGTGcggcggaaaggggaggggaaaagggg
ggacggggccgcggcgaaggaggaggaagaggcgggcgcccaggatgggg
agggaaaggaaggagaagaggtagCCGGCCCGCAAGCTGGAAGGACAGGG
TCGGAGCTCCAGCTCTTCGGCTTGCCCGTGCGTCGGCAGATGGTCTTCCA
GCTCTGCGACTTGGGCGGAGCGTCTTTGCAGGAGCTCGTGCTAGGGTTGC
CGCGCAAGGCCCTCTGTTCCCCCCAAGGGGGCTGGTTTCGACTCAGCGAC
CTGAACAGGCTCCGCGTCAGGATCAAGCGATACTTGAGCTCCCGGGTGGC
GGAGTGTGTGAGGACGGGGagcctggaggcggtggtggggccggaggagg
gcgcgctctcctcgtccgcgatGAtaaaagaggcggaggctcggaggggg
agggaggttgtgTGGCGGGAGGATGACTTTAAGAAAGGGGCCGGGGTCGA
CAGAGATCAGGAAGGGTGGCCCGAGCgacagggcgggaaggcaatgacga
ggaggagtagCAAGCGTACAtcggcaggggggggagggaggagaagcgct
gAAgtcatggagggggaaggcggggtgaggaggaatgTAAAGAGGGCGCG
ACGGGCAGCCCTGAAGCAGGcagaggaaaggcaggacgAGGTGAGCGAAT
GGGAGGACGACAGGGAGCTGgacggtggagaaggcggcagcttaaggggg
gggcaggaggatgaggagggtgaagaggacgaggagagggggttGAGACA
TTTGGGGGATCTCCTAGGCCAACCCATGGGCGGTATAAAAAGCTCGCGAG
GAGATAGAAGAacggcgagggcgggcagacAGTCTAGCGGGGGgcgcgtg
gaagaggtggaagataCAGATGAGCTTGGAGGCAACTTTGTCATTCCCCT
CACAgcgggagaaatggaaaacGCGAGCTCGATTCGCTTGCTCGGAGGTT
ACCAAGGTGGAGACtattcttcctcgtcgtctactgaggaagatgaagga
gctgAATCTGACTGA

Coding sequence (CDS) from alignment at CM002460.1:761452..763716+

>rna3118 ID=rna3118|Name=rna3118|organism=Nannochloropsis gaditana|type=CDS|length=2265bp|location=Sequence derived from alignment at CM002460.1:761452..763716+ (Nannochloropsis gaditana)
ATGGAAATCCTGCCAACGCAAAGAGCGACAAGAGCTTCAGATGTGCTAGC
GCCATCTGAACAAAGGGAGGACTCGGTTAATGTGAAATTGACAGCTGGAG
AACAAGGGATTTGTGTAGCCTCTAATATTTGCCCTGCGGAGACCTGtatg
gaggcggaaggaggaatatTACCCTTAACCTCCAAGAAAGACCATGCCAC
CGTCCGCCTTGAAACCTCCAAGCCTGGTGAACCTTTGAAACTAAAACGAC
TTCTGGCAGTGGATCTTCCCGTGCTGTGCTCACGGCCGATGACGGCAGTA
AGCATGCTCGGAGGGTTAGACAGGCTGAGTGCAGCTTGCACAGGGAAGAC
CCGCAAGCTCCAATTCTCATTCCGACCCGGCGACGAACTAAGCATTCCCA
TCTCCTCTCAGCCCAAAATACCAGCCTCTAGGCTCCTGCTGCGTGTGCGT
GTCCGCAGAAAGCAAATTACGGGCCAGCGTTATGCGGTTCATACCGAGGT
CGTGGGTACTGTGAGCACCACCTTCCAATTTCGGTGTTTGGCGGACTTCC
AGTACTTGACCACTCAAGCATTTTTGCCTCCGGGCACCCCAGACCTGGTT
TCTCAGGCCCGCTTGGAGatcgtccctccttcctttatCCCGGTAGCACA
CGCAGGGAACTACGCGTACGTAAGCCTGAAATCTTCGGCGTTAGCCTCCC
ACGACACGGCGCGACGGCAAGGGGTTGTTATCCGGTACGGGTGCCCCATC
CCCAAAGCCCCCCCGGCCATGTTGGTGAACCGGCCCCGGCGGCGGTCGGA
GAAGTACGGGCAGGTGCTGGAAAAATTGCAGGCGCTTTTCGATCGGGTGA
GTGGGGAGGGTACGCgacggaagggaaggggatgcCCGTGCAAGAGACGA
GCATGCTTGCAATCATGGACAAGGACCATTCATGCCTTCTCGGCTTCGGC
CCCCAACTTGCCCGTGCCACAGGAACGTGGGGGCCGGGAAATGTGGCAAC
GGAAGGCGCTCGAGTCCCAGTTCGAAAAGGAGGGCCTCCAGCACGCCTTT
TTGGAGCTCCTGCGCGTGGTCGCCTACAACATGTCGAACGGGCCCTGGCG
GGGCCTGTGGGTCCGGTACGGGTACGACCCCAGCCTGGACCCCGTGGCTC
GCTTCTACCAGGCCCTGGATGTACgctggaaggaagcgggcttGGAGAAG
GTAAAGCGGGCCTACGAGCAGGTGcggcggaaaggggaggggaaaagggg
ggacggggccgcggcgaaggaggaggaagaggcgggcgcccaggatgggg
agggaaaggaaggagaagaggtagCCGGCCCGCAAGCTGGAAGGACAGGG
TCGGAGCTCCAGCTCTTCGGCTTGCCCGTGCGTCGGCAGATGGTCTTCCA
GCTCTGCGACTTGGGCGGAGCGTCTTTGCAGGAGCTCGTGCTAGGGTTGC
CGCGCAAGGCCCTCTGTTCCCCCCAAGGGGGCTGGTTTCGACTCAGCGAC
CTGAACAGGCTCCGCGTCAGGATCAAGCGATACTTGAGCTCCCGGGTGGC
GGAGTGTGTGAGGACGGGGagcctggaggcggtggtggggccggaggagg
gcgcgctctcctcgtccgcgatGAtaaaagaggcggaggctcggaggggg
agggaggttgtgTGGCGGGAGGATGACTTTAAGAAAGGGGCCGGGGTCGA
CAGAGATCAGGAAGGGTGGCCCGAGCgacagggcgggaaggcaatgacga
ggaggagtagCAAGCGTACAtcggcaggggggggagggaggagaagcgct
gAAgtcatggagggggaaggcggggtgaggaggaatgTAAAGAGGGCGCG
ACGGGCAGCCCTGAAGCAGGcagaggaaaggcaggacgAGGTGAGCGAAT
GGGAGGACGACAGGGAGCTGgacggtggagaaggcggcagcttaaggggg
gggcaggaggatgaggagggtgaagaggacgaggagagggggttGAGACA
TTTGGGGGATCTCCTAGGCCAACCCATGGGCGGTATAAAAAGCTCGCGAG
GAGATAGAAGAacggcgagggcgggcagacAGTCTAGCGGGGGgcgcgtg
gaagaggtggaagataCAGATGAGCTTGGAGGCAACTTTGTCATTCCCCT
CACAgcgggagaaatggaaaacGCGAGCTCGATTCGCTTGCTCGGAGGTT
ACCAAGGTGGAGACtattcttcctcgtcgtctactgaggaagatgaagga
gctgAATCTGACTGA

Synonyms

Publications