EWM27531.1, cds3110 (CDS) Nannochloropsis gaditana

Overview
NameEWM27531.1
Unique Namecds3110
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:761452..763716 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27531.1
Productgeneral transcription factor polypeptide 5
Orig transcript idgnl|cribi|Naga_100015g43.6347.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:761452..763716 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR019136TF_IIIC_su-5
Homology
BLAST of EWM27531.1 vs. NCBI_GenBank
Match: gi|585109798|gb|EWM27531.1| (general transcription factor polypeptide 5 [Nannochloropsis gaditana])

HSP 1 Score: 1518.44 bits (3930), Expect = 0.000e+0
Identity = 754/754 (100.00%), Postives = 754/754 (100.00%), Query Frame = 0
Query:    1 MEILPTQRATRASDVLAPSEQREDSVNVKLTAGEQGICVASNICPAETCMEAEGGILPLTSKKDHATVRLETSKPGEPLKLKRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQITGQRYAVHTEVVGTVSTTFQFRCLADFQYLTTQAFLPPGTPDLVSQARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGEGTRRKGRGCPCKRRACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKEAGLEKVKRAYEQVRRKGEGKRGDGAAAKEEEEAGAQDGEGKEGEEVAGPQAGRTGSELQLFGLPVRRQMVFQLCDLGGASLQELVLGLPRKALCSPQGGWFRLSDLNRLRVRIKRYLSSRVAECVRTGSLEAVVGPEEGALSSSAMIKEAEARRGREVVWREDDFKKGAGVDRDQEGWPERQGGKAMTRRSSKRTSAGGGGRRSAEVMEGEGGVRRNVKRARRAALKQAEERQDEVSEWEDDRELDGGEGGSLRGGQEDEEGEEDEERGLRHLGDLLGQPMGGIKSSRGDRRTARAGRQSSGGRVEEVEDTDELGGNFVIPLTAGEMENASSIRLLGGYQGGDYSSSSSTEEDEGAESD 754
            MEILPTQRATRASDVLAPSEQREDSVNVKLTAGEQGICVASNICPAETCMEAEGGILPLTSKKDHATVRLETSKPGEPLKLKRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQITGQRYAVHTEVVGTVSTTFQFRCLADFQYLTTQAFLPPGTPDLVSQARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGEGTRRKGRGCPCKRRACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKEAGLEKVKRAYEQVRRKGEGKRGDGAAAKEEEEAGAQDGEGKEGEEVAGPQAGRTGSELQLFGLPVRRQMVFQLCDLGGASLQELVLGLPRKALCSPQGGWFRLSDLNRLRVRIKRYLSSRVAECVRTGSLEAVVGPEEGALSSSAMIKEAEARRGREVVWREDDFKKGAGVDRDQEGWPERQGGKAMTRRSSKRTSAGGGGRRSAEVMEGEGGVRRNVKRARRAALKQAEERQDEVSEWEDDRELDGGEGGSLRGGQEDEEGEEDEERGLRHLGDLLGQPMGGIKSSRGDRRTARAGRQSSGGRVEEVEDTDELGGNFVIPLTAGEMENASSIRLLGGYQGGDYSSSSSTEEDEGAESD
Sbjct:    1 MEILPTQRATRASDVLAPSEQREDSVNVKLTAGEQGICVASNICPAETCMEAEGGILPLTSKKDHATVRLETSKPGEPLKLKRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQITGQRYAVHTEVVGTVSTTFQFRCLADFQYLTTQAFLPPGTPDLVSQARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGEGTRRKGRGCPCKRRACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKEAGLEKVKRAYEQVRRKGEGKRGDGAAAKEEEEAGAQDGEGKEGEEVAGPQAGRTGSELQLFGLPVRRQMVFQLCDLGGASLQELVLGLPRKALCSPQGGWFRLSDLNRLRVRIKRYLSSRVAECVRTGSLEAVVGPEEGALSSSAMIKEAEARRGREVVWREDDFKKGAGVDRDQEGWPERQGGKAMTRRSSKRTSAGGGGRRSAEVMEGEGGVRRNVKRARRAALKQAEERQDEVSEWEDDRELDGGEGGSLRGGQEDEEGEEDEERGLRHLGDLLGQPMGGIKSSRGDRRTARAGRQSSGGRVEEVEDTDELGGNFVIPLTAGEMENASSIRLLGGYQGGDYSSSSSTEEDEGAESD 754          
BLAST of EWM27531.1 vs. NCBI_GenBank
Match: gi|939690570|ref|XP_014289267.1| (PREDICTED: general transcription factor 3C polypeptide 5 [Halyomorpha halys])

HSP 1 Score: 119.783 bits (299), Expect = 5.212e-25
Identity = 117/487 (24.02%), Postives = 197/487 (40.45%), Query Frame = 0
Query:   86 AVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRV-RRKQITGQR--YAVHTEVVGTVSTTFQFRCLADFQYLTTQAFLPPGTPDLVSQARL------------------EIVPPSFIPVAHAGNYAYVSLKSSALASHDTA----------RRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKY-------GQVLEKLQALFDRVSGEGTRRKGRGCPCKRRACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALE--SQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKE-AGLEKVKRAYEQVRRKGEGKRGDGAAAKEEEEAGAQDGEGKEGEEVAGPQAGRTGSELQLFGLPVRRQMVFQLCDLGGASLQELVLGLPR---KALCSPQGGWFRLSDLNRLRVRIKRYLS---SRVAECVRTGSL 525
             ++ P + +    A+  LGG   +S  C+   R+L+  FRP D    P     +   + ++L+++V  RK   G+   +    E++G V T+F+F+ + DFQ+L     +P G  + +S++ L                    +PP+        +      +      +D A          RR G  +     IPK P      +PR ++ K+       GQ LE+++  F+                                               R +W + AL   + F+ E L++    LL VVAY    GP+R +WVR+GYDP  DP +R YQ LD R +  AGL  + +A           +   + AK       +D E  E  +V+  +  +     +   LP  RQM +Q CD+    ++ ++  LP+    A+C P+ GW      N+ R  I  Y++   ++ A  V +GSL
Sbjct:   14 CIEYPGIVNNVDKAIETLGGTSEISKVCSKMNRRLELRFRPNDVFCKPACGD-RYKTNGIILKIKVVNRKSENGEEIGHIRSCEILGRVITSFKFKSICDFQFLPMMQ-MPDGHIEDISESLLPKRVDGDHLRQWLGSPASYFLPPAAFSRVDTQSLNTYMFRRDTKDKNDQATGSLIGRTRKRRSGHAVFVSFNIPKVPI-----KPREKAIKFLEVKFLNGQQLEQIKKCFEE----------------------------------------------RPIWSKLALMCVTSFQHEQLKY----LLPVVAYYFVTGPFRVMWVRFGYDPRKDPNSRIYQTLDYRIRAPAGLLSLVKAKRSDANYLLPSKSTHSVAK--SVVITKDVETIEQSDVSDGRIKKDSYIYEPNCLPPARQMFYQYCDIKVPEIEAMLGRLPKVVGNAVCDPKHGWLPSGFDNQCRDIINIYVTKQLNKAALVVGSGSL 441          
BLAST of EWM27531.1 vs. NCBI_GenBank
Match: gi|667250005|ref|XP_008561972.1| (PREDICTED: general transcription factor 3C polypeptide 5 [Galeopterus variegatus])

HSP 1 Score: 115.546 bits (288), Expect = 2.425e-23
Identity = 111/450 (24.67%), Postives = 175/450 (38.89%), Query Frame = 0
Query:   82 KRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQITGQ-------RYAVHTEVVGTVSTTFQFRCLADFQYLTTQA--------------FLPPGTPDLVSQ-ARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGEGTRRKGRGCPCKRRACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKEAGLE----------KVKRAYEQVRRKGEGKRGDGAAAKEEEEAGAQDGEGKEGEEVAGPQAGRTGSELQLF---GLPVRRQMVFQLCDLGGASLQELVL-GLPRKALCSPQGGW 495
            +R++ V+ P +       +  LGG + +S      T++L+  FRP D    P+ +  +   S LLLR+R + +Q  G           +  E+VG +ST ++F+ ++DFQYL                   L P       Q   L I PP F  +    +Y Y           +T  R+G    Y  P       + ++R RR             A+F     E   R          A +Q+W R             + +    R +W R A+++       +   L  L  +AY M  GPWR LW+RYGYDP  +P A+ YQ LD R +  G++          K KR+          ++  G      +        G      + P   +    + +F    LP  RQM +QLCDL    LQ+++      + LC+ + GW
Sbjct:   22 RRMVCVEYPGVVRDVAKMLQTLGGEEGVSRIYADPTKRLELYFRPKDPYCHPVCAN-RFSTSSLLLRIRKKTRQRRGMLGTEAHPEVTLDMEIVGIISTIYKFQGMSDFQYLAVHTDTGGRYMSMYDKVLMLKPEKESFFHQELPLYIPPPIFSRLDTPADYFY---------RPETQHREG----YNNPTISGENLIGLSRARRPH----------NAIFVNFEDEVPLRP-------LEAAVQTWKRVCTNPLDRKVEEELRKLFDIRPIWSRNAIKANMSVHPDKLKIL--LPFMAYYMITGPWRSLWIRYGYDPRKNPEAKIYQVLDFRIR-CGMKYGYATSDMPVKAKRSTYNYSLPVTVRKMPGQLVTMHDLKQGLGPSGTASARKSTPNKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIIHRNDGAENLCTERDGW 437          
BLAST of EWM27531.1 vs. NCBI_GenBank
Match: gi|1121758469|ref|XP_019494728.1| (PREDICTED: general transcription factor 3C polypeptide 5 isoform X1 [Hipposideros armiger])

HSP 1 Score: 112.849 bits (281), Expect = 1.801e-22
Identity = 116/456 (25.44%), Postives = 179/456 (39.25%), Query Frame = 0
Query:   82 KRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQ---ITGQR----YAVHTEVVGTVSTTFQFRCLADFQYLTTQA--------------FLPPGTPDLVSQ-ARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGE--GTRRKGRGCPCKRRACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKEAGLEKVKRAYEQVRRKGEGKRGDG------AAAKEEEEAGAQDGEGKEGEEVAGPQAGRTGS--------ELQLF---GLPVRRQMVFQLCDLGGASLQELVL-GLPRKALCSPQGGW 495
            +RL+ V+ P +       +  LGG + +S      T++L+  FRP D    P+ +  +   S LLLR++ + KQ   + G           E++G VST ++F+ ++DFQYL                   L P       Q   L I PP F  +    +Y Y           DT  R+G    Y  P       + ++R RR             A+F     +   T+         R+ C     R +    A   ++        R +W R A+++             LL  +AY M  GPWR LW+RYGYDP  +P A+ YQ LD R +  G+   K  Y  +    + KR            K   +A     + K+G   +G  + R  S         + +F    LP  RQM +QLCDL    LQ+++      +  C+ + GW
Sbjct:   22 RRLVCVEYPGIVRDVSKMLPTLGGEEGVSRTYADPTKRLELYFRPKDPYCHPVCAN-RFSTSSLLLRIKRKTKQQKRVPGPEAHPEVTFDMEILGIVSTIYKFQGMSDFQYLAVHTEAGGRHMSMYNKVLMLKPQKEAFFHQELPLYIPPPIFSRLDTPVDYFY---------RPDTQHREG----YNNPTISGENLIGLSRARRPH----------NAIFVNFEDDEVPTQPLEAAVQTWRKVCTNPLDRKVEEELAKLFDI--------RPIWSRNAVKANISVH--PDKLKVLLPFMAYYMITGPWRSLWIRYGYDPRKNPDAKIYQVLDFRIR-CGM---KYGYASIDLPVKAKRSTYNYSLPITVTKTPNQAVTTIHDLKQGLGPSGTASARKSSPNKYKLKDSVYIFREGALPPYRQMFYQLCDLSVDELQKIIHRNDGAEDFCTERDGW 439          
BLAST of EWM27531.1 vs. NCBI_GenBank
Match: gi|558196337|ref|XP_006104470.1| (PREDICTED: general transcription factor 3C polypeptide 5 isoform X2 [Myotis lucifugus])

HSP 1 Score: 112.464 bits (280), Expect = 2.370e-22
Identity = 109/441 (24.72%), Postives = 173/441 (39.23%), Query Frame = 0
Query:   75 PGEPLKLKRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQITG-------QRYAVHTEVVGTVSTTFQFRCLADFQYLTTQA--------------FLPPGTPDLVSQ-ARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGEGTRRKGRGCPCKRRACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKEAGLE----------KVKRAYEQVRRKGEGKRGDGAAAKEEEEAGAQDGEGKEGEEVAGPQAGRTGSELQLF---GLPVRRQMVFQLCDLGGASLQELV 480
            P E  + +R++ V+ P +       +S LGG + +S      T++L+  FRP D    P+ +  +   S LLLRVR + K+  G        +     +++G V T ++F+ ++DFQYL                   + P   D   Q   L I PP F  +    +Y Y           +T  R+G    Y  P       + ++R RR             A+F    G+    +         A +Q+WTR             + +    R +W R A+ ++            LL  +AY M  GPWR LW+R+GYDP   P A+ YQ LD R +  G++          K KR+          K+        ++     D  G  G   +     +    + +F    LP  RQM +QLCDL    LQ+++
Sbjct:   12 PVELRREQRMVCVEYPGVVRDVSKMLSTLGGEEGVSRIYGDPTKRLELYFRPKDPYCHPVCAN-RFSTSSLLLRVRRKTKRQEGLPGPEARPQVTFDVDILGIVPTIYRFQGMSDFQYLAVHTEVGGVHKSMYDKVLMVRPEKEDFFHQEVPLCIPPPIFSRLDTPADYFY---------RPETQHREG----YNNPPISGENLIGLSRARRLH----------NAIFVNFEGDEVPEQ------PLEAAVQTWTRLCTNPMDRKVEEELRKLFDIRPIWSRNAVRAKMSVH--PDKLKVLLPFMAYYMITGPWRSLWIRFGYDPRRHPEAKIYQVLDFRIR-CGMKSGYTSNEMPVKAKRSTYNYSLPITVKKASNQLVTMQDLKQGLDPSGAAGTRKSASNKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKII 419          
BLAST of EWM27531.1 vs. NCBI_GenBank
Match: gi|831234416|ref|XP_012663760.1| (PREDICTED: general transcription factor 3C polypeptide 5 [Otolemur garnettii])

HSP 1 Score: 110.538 bits (275), Expect = 8.959e-22
Identity = 116/464 (25.00%), Postives = 180/464 (38.79%), Query Frame = 0
Query:   69 RLETSKPGEPLKLKRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQITG-------QRYAVHTEVVGTVSTTFQFRCLADFQYLTTQA--------------FLPPGTPDLVSQ-ARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGEGTRRKGRGCPCK-RRACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKEAGLE----------KVKRAYEQVRRKGEGKRGDGAAAKEEEEAGAQDGEGKEGEEVAGPQAGRTGSELQLF---GLPVRRQMVFQLCDLGGASLQELVL-GLPRKALCSPQGGW 495
            RL T+ P E  + + ++ V+ P +       VS LGG + +S      +++L+  FRP D    P+ +  +   S LLLR++ + +Q  G              E++G +ST ++F+ ++DFQYL                   L P       Q   L I PP F  +    +Y Y           +T  R+G    Y  P       + ++R RR             A+F     E         P K   A + +W R             + +    R +W R A+++             LL  +AY M  GPWR LW+R+GYDP  +P A+ YQ LD R +  GL+          K KR+          K+         +        G  G     P   +    + +F   GLP  RQM +QLCDL    LQ+++      + LC+ + GW
Sbjct:    9 RLGTAVPVELRRERNMVCVEYPGVVRDVTKMVSTLGGEEGVSRIYADPSKRLELYFRPKDPYCHPVCAN-RFSTSSLLLRIKKKTRQRKGVLGTEAHPEVTFGMEILGIISTVYKFQGMSDFQYLAMHTEASGKHTSMYDKVLMLRPEKQGFFHQELPLYIPPPIFSRLDTPVDYFY---------RPETQHREG----YNNPPISGENLIGLSRARRPH----------NAIFVNFEDE--------VPSKPLEAAVHTWKRVCTNPMDRKVEEELRKLFEIRPVWSRNAVKANISVH--PDKLKVLLPYLAYYMITGPWRSLWIRFGYDPRKNPEAKIYQVLDFRIR-CGLKYGYAPNELPVKAKRSTYNYSLPITIKKTTSQLVTMHDLKQGLGPSGTPGVRKLAPSKYKLKDTVYIFREGGLPPYRQMFYQLCDLNVEELQKIIHRNDGAETLCTERDGW 437          
BLAST of EWM27531.1 vs. NCBI_GenBank
Match: gi|926644034|ref|XP_013788268.1| (PREDICTED: general transcription factor 3C polypeptide 5-like [Limulus polyphemus])

HSP 1 Score: 109.768 bits (273), Expect = 1.371e-21
Identity = 114/451 (25.28%), Postives = 181/451 (40.13%), Query Frame = 0
Query:   82 KRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRK----------QITGQRYAVHTEVVGTVSTTFQFRCLADFQYLTTQ--------AFLPPGTPD-------LVSQARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGEGTRRKGRGCPCKRRACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWK------EAGLEKVKRAYEQVRRKGEGKRGDGAAAKEEEEAGA---QDGEGKEGEEVAGPQAGRTGSELQLFG-LPVRRQMVFQLCDLGGASLQELVLGLPRKAL--CSPQGGW 495
            K+L+ V+ P +       +  LGG   LS   +  +R+L+  +RP D +        +   + LL++V VR+K            +   Y    +++G V TT++F+ + DFQYL  +        + +P   P        L  +A + I PP F  +    NY Y    +   +SH  + +               P  ++ R R+R   +        A+F     +      R  P K         +  H  S       V +    R +W R AL +    E     F+  L + +Y    GPWR  WVR+ YDP  DP+A+ YQ LD R K      + G++  + AY         + GD  A  + +       ++ E K GEE    +  R  S   + G LP  RQM +QLCD+    +Q LV     ++   C P+ GW
Sbjct:    9 KKLIGVEYPGIVKNVEKMLYSLGGEKSLSKVYSEPSRRLELRYRPND-IYCKCGHGDRFNTTNLLMKV-VRKKVKRAVDENSLSESSDCYTYRVDIIGIVDTTYRFKGMMDFQYLPMKINPGGQYRSLIPSLVPTGIQLCNWLQKEAEIFIQPPLFSRLDMPTNYHYRRDPTHRNSSHHLSTKHH-------------PPNIIGRTRKRRSGF--------AIFMNFEDK------RDVPQKPADQALKQIKLHHPESDIVEK--VQKLFQERPVWSRNALVAVMGCERTVIKFI--LPIFSYYHLTGPWRSFWVRFQYDPRKDPLAKQYQTLDFRVKLLGPSHDVGIKSKRSAYNYKLPTKFSRPGDRVATIQTQSFSLSRDEEPEDKHGEE----EMNRKLSYKFIPGLLPPCRQMFYQLCDIEEPKVQALVHQNDDQSPEECHPKEGW 422          
BLAST of EWM27531.1 vs. NCBI_GenBank
Match: gi|803226488|ref|XP_011973552.1| (PREDICTED: general transcription factor 3C polypeptide 5 isoform X4 [Ovis aries musimon])

HSP 1 Score: 109.768 bits (273), Expect = 1.948e-21
Identity = 118/454 (25.99%), Postives = 179/454 (39.43%), Query Frame = 0
Query:   75 PGEPLKLKRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQITGQ-------RYAVHTEVVGTVSTTFQFRCLADFQYLTTQA--------------FLPPGTPDLVSQ-ARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGEGTRRKGRGCPCKRRACLQSWTRTI-----HAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKEAGLE----------KVKRAYEQVR-----RKGEGKRGDGAAAKEEEEAGAQDGEGKEGEEVA---GPQAGRTGSELQLF---GLPVRRQMVFQLCDLGGASLQELV 480
            P E  + +R++ V+ P +       +  LGG + +S      T++L+  FRP D    P+ +  +   + LLLR++ + ++ +G        +     E +G VST F+F+ ++DFQYL                   L P       Q   L I PP F  +    +Y Y           +T  R+G    Y  P       + ++R RR             A+F  V+ EG     R       A +Q+W +       H   A    L        R +W R AL++       +   L  L  VAY M  GPWR LW+R+GYDP   P A+ YQ LD R +  G++          K KR+          +K    RG  AA++       + G G  G   A    P   +    + +F    LP  RQM +Q CDL    LQ ++
Sbjct:   15 PVELRRERRMVCVEYPGVVRDVSKMLRTLGGEEGVSRIYADATKRLELYFRPKDPYCHPVCAN-RFSTNSLLLRIKRKTRRQSGALGPEARPQVTYDIESLGVVSTVFKFQGMSDFQYLAVHTEVDGRQVSMYDKVLMLKPQKESFFHQDLPLYIPPPIFSRLDTPVDYYY---------RPETQHREG----YNNPAVSGENLIGLSRARRPH----------NAIF--VNFEGDEVPERPM----EAAVQTWKKVCTNPVDHRVEAELRKL-----FDIRPIWSRNALKANISVHPDKLKIL--LPFVAYYMITGPWRSLWIRFGYDPRKRPEAKIYQVLDFRIR-CGMKYGYAPSDMPVKAKRSTYNYSLPITVKKTNPCRGPLAASQLVTMHDLKQGLGPSGSATAQKSSPNKYKLKDSVYIFQEGALPPYRQMFYQFCDLNVEELQRVI 430          
BLAST of EWM27531.1 vs. NCBI_GenBank
Match: gi|554581307|ref|XP_005882179.1| (PREDICTED: general transcription factor 3C polypeptide 5 isoform X2 [Myotis brandtii])

HSP 1 Score: 108.997 bits (271), Expect = 2.537e-21
Identity = 108/441 (24.49%), Postives = 173/441 (39.23%), Query Frame = 0
Query:   75 PGEPLKLKRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQITG-------QRYAVHTEVVGTVSTTFQFRCLADFQYLTTQA--------------FLPPGTPDLVSQ-ARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGEGTRRKGRGCPCKRRACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKEAGLE----------KVKRAYEQVRRKGEGKRGDGAAAKEEEEAGAQDGEGKEGEEVAGPQAGRTGSELQLF---GLPVRRQMVFQLCDLGGASLQELV 480
            P E  + +R++ V+ P +       +S LGG + +S      T++L+  FRP D    P+ +  +   S LLLRVR + K+  G        +     +++G V T ++F+ ++DFQYL                   + P   D   Q   L I PP F  +    +Y Y           +T  R+G    Y  P       + ++R RR             A+F    G+    +         A +Q+WTR             + +    R +W R A+ ++            LL  +AY M  GPWR LW+R+GYDP   P A+ YQ LD R +  G++          K KR+          K+        ++        G+ G   +     +    + +F    LP  RQM +QLCDL    LQ+++
Sbjct:   12 PVELRREQRMVCVEYPGVVRDVSKMLSTLGGEEGVSRIYGDPTKRLELYFRPKDPYCHPVCAN-RFSTSSLLLRVRRKTKRQEGLPGPEARPQVTFDVDILGIVPTIYRFQGMSDFQYLAVHTEVGGVHKSMYDKVLMVRPEKEDFFHQELPLCIPPPIFSRLDTPADYFY---------RPETQHREG----YNNPPISGENLIGLSRARRLH----------NAIFVNFEGDEVPEQ------PLEAAVQTWTRLCTNPMDRKVEEELRKLFDIRPIWSRNAVRAKMSVH--PDKLKVLLPFMAYYMITGPWRSLWIRFGYDPRRHPEAKIYQVLDFRIR-CGMKSGYTSNEMPVKAKRSTYNYSLPITVKKASNQLVTMQDLKQGLGPSGEAGTRKSASNKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKII 419          
BLAST of EWM27531.1 vs. NCBI_GenBank
Match: gi|1062992223|ref|XP_017911538.1| (PREDICTED: general transcription factor 3C polypeptide 5 isoform X3 [Capra hircus])

HSP 1 Score: 108.997 bits (271), Expect = 3.685e-21
Identity = 115/449 (25.61%), Postives = 178/449 (39.64%), Query Frame = 0
Query:   75 PGEPLKLKRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQITGQ-------RYAVHTEVVGTVSTTFQFRCLADFQYLTTQA--------------FLPPGTPDLVSQ-ARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSGEGTRRKGRGCPCKRRACLQSWTRTIHAFSASAPNLPVPQERGGREMWQRKALESQFEKEGLQHAFLELLRVVAYNMSNGPWRGLWVRYGYDPSLDPVARFYQALDVRWKEAGLE----------KVKRAYEQVR-----RKGEGKRGDGAAAKEEEEAGAQDGEGKEGEEVA---GPQAGRTGSELQLF---GLPVRRQMVFQLCDLGGASLQELV 480
            P E  + +R++ V+ P +       +  LGG + +S      T++L+  FRP D    P+ +  +   + LLLR++ + ++ +G        +     E +G VST F+F+ ++DFQYL                   L P       Q   L I PP F  +    +Y Y           +T  R+G    Y  P       + ++R RR             A+F  V+ EG     R       A +Q+W +             + +    R +W R AL++       +   L  L  VAY M  GPWR LW+R+GYDP   P A+ YQ LD R +  G++          K KR+          +K    RG  AA++       + G G  G   A    P   +    + +F    LP  RQM +Q CDL    LQ ++
Sbjct:   15 PVELRRERRMVCVEYPGVVRDVSKMLRTLGGEEGVSRIYADATKRLELYFRPKDPYCHPVCAN-RFSTNSLLLRIKRKTRRQSGALGPEARPQVTYDIESLGVVSTVFKFQGMSDFQYLAVHTEADGGQVSMYDKVLMLKPQKESFFHQDLPLYIPPPIFSRLDTPVDYYY---------RPETQHREG----YNNPAVSGENLIGLSRARRPH----------NAIF--VNFEGDEVPERPM----EAAVQTWKKVCTNPVDHRVEEELRKLFDIRPIWSRNALKANISVHPDKLKIL--LPFVAYYMITGPWRSLWIRFGYDPRKRPEAKIYQVLDFRIR-CGMKYGYAPSDMPVKAKRSTYNYSLPITVKKTNPCRGPLAASQLVTMHDLKQGLGPSGSATAQKSSPNKYKLKDSVYIFQEGALPPYRQMFYQFCDLNVEDLQRVI 430          
The following BLAST results are available for this feature:
BLAST of EWM27531.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109798|gb|EWM27531.1|0.000e+0100.00general transcription factor polypeptide 5 [Nannoc... [more]
gi|939690570|ref|XP_014289267.1|5.212e-2524.02PREDICTED: general transcription factor 3C polypep... [more]
gi|667250005|ref|XP_008561972.1|2.425e-2324.67PREDICTED: general transcription factor 3C polypep... [more]
gi|1121758469|ref|XP_019494728.1|1.801e-2225.44PREDICTED: general transcription factor 3C polypep... [more]
gi|558196337|ref|XP_006104470.1|2.370e-2224.72PREDICTED: general transcription factor 3C polypep... [more]
gi|831234416|ref|XP_012663760.1|8.959e-2225.00PREDICTED: general transcription factor 3C polypep... [more]
gi|926644034|ref|XP_013788268.1|1.371e-2125.28PREDICTED: general transcription factor 3C polypep... [more]
gi|803226488|ref|XP_011973552.1|1.948e-2125.99PREDICTED: general transcription factor 3C polypep... [more]
gi|554581307|ref|XP_005882179.1|2.537e-2124.49PREDICTED: general transcription factor 3C polypep... [more]
gi|1062992223|ref|XP_017911538.1|3.685e-2125.61PREDICTED: general transcription factor 3C polypep... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3118rna3118Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications