rna3117, rna3117 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3117
Unique Name	rna3117
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2626
Alignment location	CM002460.1:759484..760526 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100015g44.6357.mrna
Orig protein id	gnl\|cribi\|Naga_100015g44.6357
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:759484..760526 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g44	gene2995	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3117	rna3117-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27541.1	cds3109	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:759484..760526+
coding sequence from alignment at CM002460.1:759484..760526+

mRNA sequence

>rna3117 ID=rna3117|Name=rna3117|organism=Nannochloropsis gaditana|type=mRNA|length=2626bp
AGGCATAGCGATCATCACCCGAGGTCTCGTCATGGCGTCTCACGCGATCT
CTGAAGTTTCGTGCGAGTAGATGTCGAGTCCTGAGTTTTTTAGCAAACTC
TGGTGTGAAAAGCAATGATGGCACCGCGCATGGTGGGAGCTTTCTTTTGA
AAGCTGTCCGACAGTATGGTAGGGATACTGCAAGGACGTATCTTGAGCGC
ACTGGTCGACGCGGCAGGAGGATTGCCCGTGCACGCCTCAGGTCAGCGAG
CCTTCGCCCTGTCCGGCCTTCCCACTGGGTTTACACCCACAAGTCATGCT
ATCATTCAGTGCTTTGGCAAATCGGTGAGCTGTTAAAGTAAGAAGTGCTT
CAATTTTCCATCAGCCACGAAGTCTGGCTCACGAAAAAGCGCGAGGAGGC
CATGGGTTACCTGACTTACGACACGCCCTAGCCAGAGCAATATATGGTCA
TAAGTCCCTATGATTGTATGGACGTTGCCTGCTCTCAAGTGTTGGCTTTT
CATGCCAAGAGCTCTGCTTCATCACCTGTCACGAACACTGACAAAACAGC
TTATCTGAAAGGAAAGCGAAAGAAACTCCTCTTAAAAGCCCAGTCTAAAT
AGTGTCTTTAACTATGCCCTTACATGCGAAGTCATGTAGAACGCACAATC
TTTCTGCTGTGTTGGTGGCAGGCTATTGCCTGTCGTACGAAGTGTCTGCG
TGTCTTTTTCTTGGCCGCATGCCTCTTCCTGTCCCGTCACGACTTTCGCT
GTAGTTGTCTCCTTCTCCTTTTAAGCCTCATGACACCCCCATGTCCTATC
GATATTGTGCAAACAGACACGTGCGTCCTTCCTCGCGGTAGCTAGAAGTG
AAACAAGAAGCCAGCCATGAAATTGCTTACCAGTGTCGTCGTTCTCTCAG
CGGCCGCGATCCTAAGCGTCGTGAATGGCTTCATGACGCCGGCCCCCCAA
GCCTCCTTTGTCGCCAAGTTGGACCCTGCCATGTCCAGGATTCATCGAAG
CCGCGCATCTCCTAGCATGGCTTTGAGCACAGCGATGGGTGCCAATGGAG
CGTGGCGCTTCTTGTCCGCTGCCCGCAAGGCCGCCGTCTCCCTGCCTACC
AAGTCCTCAACAGCACTGGCATCCAGCGCAGCAGACATGGCCCCCAAGAA
AAAAATGACCGCCTTTGAAATGTACGAGAAGGGCAGTGAGCTGATCGTCA
ACCTTTTTCCCATTTGGACCGTGCTCTCCTCGGGCCTTGCCCTCTACCGC
CCTGAGCTCTTCGCCTGGTTCACCACCAAGTACTTTACCTGGGGACTGGG
GCTTCTCATGCTCTCCATGGGCATCACCCTCTCACCGCAGGACTTCGCGG
ACGTCCTCAAGCGACCCTCGGCCGTACTGGTGGGTTTCATCTTCTGCTAC
TTGTTCATGCCCGCCTTCGCCTACGCCACGGCGCAAGGCTTCGCCCTGAG
CCCCGAGATGGTCGCCGGCCTGGTTCTGGTCGGGAGCATCAACGGGGGGC
AGGCCTCGAACCTGTGCACCTACATTGCCAAGGGCGACGTGGCTCTGTCC
GTGATGATGACCACAGCCACCACCCTGGGCGCCATCTTCATGACACCCCT
CCTCTGCAAGTTCCTCCTCGGGGCCATCGTCCCCGTCGATGCCGTGGGCA
TTGCCCTCTCCACCGTTCAAGTCGTCCTGGCTCCCATTGTCCTGGGTATG
CTGGCCAACAAGTTCTTGAACCGGGCCGTCAAAGCAGTGCTGCCCTTCTC
CCCCGTGGTGGGCATGGTCTCAACCTGCCTCTTGGTTGCCTCCGCGGTCG
CGCAGTGCGCCCCGGCCATTCTGGGCGCGGGGTGGAGCCTGCAAATCGCC
ACCATCTTCTACCATCTGGTCGCTGGGGTCGCTGGATATGCCATCCCGCG
CTTCCTGAAATTTTCTGAGACGGACTCCCGGACTATGGCGATTGAGACCG
CGATGAAATCGTCCGCTTTCGGATTCCTGTTGGCTAGCCTCCACTTTCCT
AATTTCTTGGTCCGGGTTCCCCCCGCCGTCTCCGTGGTGTGGATGGCTGT
AACAGGCTCGACTCTGGCGGTCATCTGGCGTTTCATCCCGGTCAAAGACG
AGAAGAAATGAGCGGCGACTGCAAAATCGTCTTCCTTGTGCTGAATCAGA
GGAAGACTATAGCAGACGATGATCGAAAAGCTTTTCTCGAAAAGATCGCA
TGCATGTTTGCCTCTGATTGTTGACCGGCACGACGTGATCCGTACCCCTG
TTCCCTGTTTGTGTCTCTGTGAGCGCGTGTAGTTGTGGTTAAGTGAGTCA
CAGGGTTCTGAAGTGTCATTATTTGTCTGACAAATGTCATGTATGTCCTG
GGATAACCTGAACGTAACAAGTGGACATTTATGTTTGTTAATGATTCTTT
AAAGATACTCTTCTACTCTTTCATATCTCTACCTTTCAATCATTTTTTTT
AAATTTTTGGGGGTTTTACGACACCAAAGTAAGGAAGTGAGAAATCGAGA
AAAGGTCGATTGGGGGCGGCTTTCCCTTTACCTGTTGAATACCGCATCAA
CGAAGAGGTTCCCTTCCCAACTTAATAGTCATGCGGCGGATATCGTATGT
TTACCCAAAATTAGGGAAGCTTGTCC

protein sequence of rna3117

>rna3117-protein ID=rna3117-protein|Name=rna3117|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MLQQACARVESPISRRVCAGAAAARITPRIAALRAVSKHFTYSERQFTSS
TGASNNPEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNW
RNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWH
DGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYIRNPSTGL
VEYPLGHPSQT

mRNA from alignment at CM002460.1:759484..760526+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3117 ID=rna3117|Name=rna3117|organism=Nannochloropsis gaditana|type=mRNA|length=1043bp|location=Sequence derived from alignment at CM002460.1:759484..760526+ (Nannochloropsis gaditana)
ATGTTGCAACAGGCCTGCGCGCGCGTGGAATCCCCTATCTCACGCCGTGT
ATGTGCAGGAGCAGCTGCTGCTCGGATAACCCCGAGAATTGCTGCATTGC
GTGCAGTTTCCAAGCATTTCACATATAGCGAACGACAATTTACCTCCAGT
ACTGGCGCTTCCAACAACCCTGAAGCTCGcccaccttttcccccttacAC
ATTTGAAACAGCCACTGAAAAGGTAATTCCTTACACACCCGCAACAAGTG
GTTTTATGATCTAGCTTGACAATTTAGTCCTCTCATTAGGTTCGAAAGGC
ACAAGACGCTTGGAATACTCGAAATCCTGACGTCGTAGCTCTAGCATGTA
CGTTTTGTGGCTGAACTCGGGTTCTGgtcatccttctcttcatTTCTCAA
CCTCCTTTTCGCTGTCACGTTCGATAGACACACCCGACAGCAACTGGCGG
AACCGAGACGAATTTTTCCAGGGTCGTGAGGTAAGTAGCGGGCCTGGCAT
CTTTACCTTCCAAGAGTGGTGAAGACTGTGCAATCTCTGATGCGTGTCTC
TGCACTTCCTATGCACACAAGGCAATCAGAGCATTTCTGCGGAAAAAGTG
GGCGAAAGAGCGCGATTATTGTCTGATGAAAGAGCTCTGGGGTTTTCATG
GTAATCGAATCAGCGCCCGATTTGAGTACGAATGGCACGACGGGCAGGGT
CAATGGTGGCGATCACACGGGAACGAGCAATGGGAATACGATGCGAAGGG
TACGTCACAGTCATGCACAACGACGCACAAAGCCTTGTTAGAAGCCTGCA
TACGCCAGGAAAAATTTGTTTCCGTGGAGCGTAGAATGATTGATCTTGAA
CCGGCAATAAACTTTGCCAGAGGGACAAGTATCCCAATATGGTATtgtcc
ctttccatcccgcAATAGGCTTAATGAAGCGACGAGATGCCAGCATAAAT
GACGTTCGTATCAAGGAATCCGAAAGGCGATACATTCGGAATCCTTCTAC
GGGTTTGGTAGAGTATCCATTAGGCCATCCTTCCCAGACATGA

Coding sequence (CDS) from alignment at CM002460.1:759484..760526+

>rna3117 ID=rna3117|Name=rna3117|organism=Nannochloropsis gaditana|type=CDS|length=3180bp|location=Sequence derived from alignment at CM002460.1:759484..760526+ (Nannochloropsis gaditana)
ATGTTGCAACAGGCCTGCGCGCGCGTGGAATCCCCTATCTCACGCCGTGT
ATGTGCAGGAGCAGCTGCTGCTCGGATAACCCCGAGAATTGCTGCATTGC
GTGCAGTTTCCAAGCATTTCACATATAGCGAACGACAATTTACCTCCAGT
ACTGGCGCTTCCAACAACCCTGAAGCTCGcccaccttttcccccttacAC
ATTTGAAACAGCCACTGAAAAGGTTCGAAAGGCACAAGACGCTTGGAATA
CTCGAAATCCTGACGTCGTAGCTCTAGCATACACACCCGACAGCAACTGG
CGGAACCGAGACGAATTTTTCCAGGGTCGTGAGGCAATCAGAGCATTTCT
GCGGAAAAAGTGGGCGAAAGAGCGCGATTATTGTCTGATGAAAGAGCTCT
GGGGTTTTCATGGTAATCGAATCAGCGCCCGATTTGAGTACGAATGGCAC
GACGGGCAGGGTCAATGGTGGCGATCACACGGGAACGAGCAATGGGAATA
CGATGCGAAGGGCTTAATGAAGCGACGAGATGCCAGCATAAATGACGTTC
GTATCAAGGAATCCGAAAGGCGATACATTCGGAATCCTTCTACGGGTTTG
GTAGAGTATCCATTAGGCCATCCTTCCCAGACATGAATGTTGCAACAGGC
CTGCGCGCGCGTGGAATCCCCTATCTCACGCCGTGTATGTGCAGGAGCAG
CTGCTGCTCGGATAACCCCGAGAATTGCTGCATTGCGTGCAGTTTCCAAG
CATTTCACATATAGCGAACGACAATTTACCTCCAGTACTGGCGCTTCCAA
CAACCCTGAAGCTCGcccaccttttcccccttacACATTTGAAACAGCCA
CTGAAAAGGTTCGAAAGGCACAAGACGCTTGGAATACTCGAAATCCTGAC
GTCGTAGCTCTAGCATACACACCCGACAGCAACTGGCGGAACCGAGACGA
ATTTTTCCAGGGTCGTGAGGCAATCAGAGCATTTCTGCGGAAAAAGTGGG
CGAAAGAGCGCGATTATTGTCTGATGAAAGAGCTCTGGGGTTTTCATGGT
AATCGAATCAGCGCCCGATTTGAGTACGAATGGCACGACGGGCAGGGTCA
ATGGTGGCGATCACACGGGAACGAGCAATGGGAATACGATGCGAAGGGCT
TAATGAAGCGACGAGATGCCAGCATAAATGACGTTCGTATCAAGGAATCC
GAAAGGCGATACATTCGGAATCCTTCTACGGGTTTGGTAGAGTATCCATT
AGGCCATCCTTCCCAGACATGAATGTTGCAACAGGCCTGCGCGCGCGTGG
AATCCCCTATCTCACGCCGTGTATGTGCAGGAGCAGCTGCTGCTCGGATA
ACCCCGAGAATTGCTGCATTGCGTGCAGTTTCCAAGCATTTCACATATAG
CGAACGACAATTTACCTCCAGTACTGGCGCTTCCAACAACCCTGAAGCTC
GcccaccttttcccccttacACATTTGAAACAGCCACTGAAAAGGTTCGA
AAGGCACAAGACGCTTGGAATACTCGAAATCCTGACGTCGTAGCTCTAGC
ATACACACCCGACAGCAACTGGCGGAACCGAGACGAATTTTTCCAGGGTC
GTGAGGCAATCAGAGCATTTCTGCGGAAAAAGTGGGCGAAAGAGCGCGAT
TATTGTCTGATGAAAGAGCTCTGGGGTTTTCATGGTAATCGAATCAGCGC
CCGATTTGAGTACGAATGGCACGACGGGCAGGGTCAATGGTGGCGATCAC
ACGGGAACGAGCAATGGGAATACGATGCGAAGGGCTTAATGAAGCGACGA
GATGCCAGCATAAATGACGTTCGTATCAAGGAATCCGAAAGGCGATACAT
TCGGAATCCTTCTACGGGTTTGGTAGAGTATCCATTAGGCCATCCTTCCC
AGACATGAATGTTGCAACAGGCCTGCGCGCGCGTGGAATCCCCTATCTCA
CGCCGTGTATGTGCAGGAGCAGCTGCTGCTCGGATAACCCCGAGAATTGC
TGCATTGCGTGCAGTTTCCAAGCATTTCACATATAGCGAACGACAATTTA
CCTCCAGTACTGGCGCTTCCAACAACCCTGAAGCTCGcccaccttttccc
ccttacACATTTGAAACAGCCACTGAAAAGGTTCGAAAGGCACAAGACGC
TTGGAATACTCGAAATCCTGACGTCGTAGCTCTAGCATACACACCCGACA
GCAACTGGCGGAACCGAGACGAATTTTTCCAGGGTCGTGAGGCAATCAGA
GCATTTCTGCGGAAAAAGTGGGCGAAAGAGCGCGATTATTGTCTGATGAA
AGAGCTCTGGGGTTTTCATGGTAATCGAATCAGCGCCCGATTTGAGTACG
AATGGCACGACGGGCAGGGTCAATGGTGGCGATCACACGGGAACGAGCAA
TGGGAATACGATGCGAAGGGCTTAATGAAGCGACGAGATGCCAGCATAAA
TGACGTTCGTATCAAGGAATCCGAAAGGCGATACATTCGGAATCCTTCTA
CGGGTTTGGTAGAGTATCCATTAGGCCATCCTTCCCAGACATGAATGTTG
CAACAGGCCTGCGCGCGCGTGGAATCCCCTATCTCACGCCGTGTATGTGC
AGGAGCAGCTGCTGCTCGGATAACCCCGAGAATTGCTGCATTGCGTGCAG
TTTCCAAGCATTTCACATATAGCGAACGACAATTTACCTCCAGTACTGGC
GCTTCCAACAACCCTGAAGCTCGcccaccttttcccccttacACATTTGA
AACAGCCACTGAAAAGGTTCGAAAGGCACAAGACGCTTGGAATACTCGAA
ATCCTGACGTCGTAGCTCTAGCATACACACCCGACAGCAACTGGCGGAAC
CGAGACGAATTTTTCCAGGGTCGTGAGGCAATCAGAGCATTTCTGCGGAA
AAAGTGGGCGAAAGAGCGCGATTATTGTCTGATGAAAGAGCTCTGGGGTT
TTCATGGTAATCGAATCAGCGCCCGATTTGAGTACGAATGGCACGACGGG
CAGGGTCAATGGTGGCGATCACACGGGAACGAGCAATGGGAATACGATGC
GAAGGGCTTAATGAAGCGACGAGATGCCAGCATAAATGACGTTCGTATCA
AGGAATCCGAAAGGCGATACATTCGGAATCCTTCTACGGGTTTGGTAGAG
TATCCATTAGGCCATCCTTCCCAGACATGA

Synonyms

Publications