EWM27541.1, cds3109 (CDS) Nannochloropsis gaditana

Overview
NameEWM27541.1
Unique Namecds3109
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:759484..759705 +
Alignment locationCM002460.1:759773..759830 +
Alignment locationCM002460.1:759911..759963 +
Alignment locationCM002460.1:760055..760232 +
Alignment locationCM002460.1:760402..760526 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27541.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100015g44.6357.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:759484..759705 +
CM002460.1supercontigCM002460.1:759773..759830 +
CM002460.1supercontigCM002460.1:759911..759963 +
CM002460.1supercontigCM002460.1:760055..760232 +
CM002460.1supercontigCM002460.1:760402..760526 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR009783DUF1348
Homology
BLAST of EWM27541.1 vs. NCBI_GenBank
Match: gi|585109808|gb|EWM27541.1| (hypothetical protein Naga_100015g44 [Nannochloropsis gaditana])

HSP 1 Score: 441.039 bits (1133), Expect = 7.897e-157
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MLQQACARVESPISRRVCAGAAAARITPRIAALRAVSKHFTYSERQFTSSTGASNNPEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYIRNPSTGLVEYPLGHPSQT 211
            MLQQACARVESPISRRVCAGAAAARITPRIAALRAVSKHFTYSERQFTSSTGASNNPEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYIRNPSTGLVEYPLGHPSQT
Sbjct:    1 MLQQACARVESPISRRVCAGAAAARITPRIAALRAVSKHFTYSERQFTSSTGASNNPEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYIRNPSTGLVEYPLGHPSQT 211          
BLAST of EWM27541.1 vs. NCBI_GenBank
Match: gi|553188941|ref|XP_005854898.1| (response regulator receiver domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|553196087|ref|XP_005856267.1| response regulator receiver domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292800|gb|EKU20102.1| response regulator receiver domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294162|gb|EKU21462.1| response regulator receiver domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 220.32 bits (560), Expect = 5.043e-71
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query:    1 MLQQACARVESPISRRVCAGAAAARITPRIAALRAVSKHFTYSERQFTSSTGASNNPEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFF 107
            MLQQACARVESPISRRVCAGAAAARITPRIAALRAVSKHFTYSERQFTSSTGASNNPEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFF
Sbjct:    5 MLQQACARVESPISRRVCAGAAAARITPRIAALRAVSKHFTYSERQFTSSTGASNNPEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFF 111          
BLAST of EWM27541.1 vs. NCBI_GenBank
Match: gi|516126703|ref|WP_017557283.1| (DUF1348 domain-containing protein [Nocardiopsis baichengensis])

HSP 1 Score: 206.068 bits (523), Expect = 1.025e-64
Identity = 99/151 (65.56%), Postives = 116/151 (76.82%), Query Frame = 0
Query:   57 PEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYI--RNPSTGLVEYPL 205
            PE+RPP PP+T ETA +KV+ A+DAWNTR+P  VALAYTPDS WRNRD F QGR+ I AFL +KW +E DY L K LW FHGNRI+ RF+YE  D  GQWWRSHGNEQWE+DA+GLM RR+ASINDV I ES+RR I  R  +   +E PL
Sbjct:    2 PESRPPVPPFTLETALQKVQAAEDAWNTRDPHRVALAYTPDSVWRNRDTFLQGRDEIIAFLTRKWERELDYALRKSLWAFHGNRIAVRFQYESRDSAGQWWRSHGNEQWEFDAQGLMLRREASINDVPIAESDRRIIGPRPEAEYGIEIPL 152          
BLAST of EWM27541.1 vs. NCBI_GenBank
Match: gi|971872120|ref|WP_058940933.1| (DUF1348 domain-containing protein [Streptomyces kanasensis] >gi|971328983|gb|KUH39741.1| histidine kinase [Streptomyces kanasensis])

HSP 1 Score: 204.912 bits (520), Expect = 2.511e-64
Identity = 100/152 (65.79%), Postives = 118/152 (77.63%), Query Frame = 0
Query:   57 PEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYIRNP---STGLVEYPL 205
            PE RPP+PP+T ETA +KV+ A+DAWNTR+P  VA AYTPDS WRNRD F  GRE I AFL +KW +ERDY L K LWGFHGNRI+ RF+YEWHD +GQWWRS+GNE WE+DA+GLM+RR+ASINDV I  +ERR I  P   S   V+ PL
Sbjct:    2 PEDRPPYPPFTQETALQKVQAAEDAWNTRDPRRVASAYTPDSMWRNRDRFVAGREEIVAFLTRKWERERDYALRKSLWGFHGNRIAVRFQYEWHDAEGQWWRSYGNELWEFDARGLMRRREASINDVAITGAERR-IHGPRPLSEHGVDIPL 152          
BLAST of EWM27541.1 vs. NCBI_GenBank
Match: gi|516106407|ref|WP_017536987.1| (DUF1348 domain-containing protein [Nocardiopsis halophila])

HSP 1 Score: 204.527 bits (519), Expect = 3.682e-64
Identity = 98/151 (64.90%), Postives = 115/151 (76.16%), Query Frame = 0
Query:   57 PEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYI--RNPSTGLVEYPL 205
            PE+RPP PP+T ETA +KV+ A+DAWNTR+P  VALAYTPDS WRNRD F QG + I AFL +KW +E DY L K LW FHGNRI+ RF+YE  D  GQWWRSHGNEQWE+DA+GLM RR+ASINDV I ES+RR I  R  +   +E PL
Sbjct:    2 PESRPPVPPFTLETALQKVQAAEDAWNTRDPHRVALAYTPDSVWRNRDTFLQGHDEIIAFLTRKWERELDYALRKSLWAFHGNRIAVRFQYESRDSAGQWWRSHGNEQWEFDAQGLMLRREASINDVAIAESDRRIIGPRPEAEYGIEIPL 152          
BLAST of EWM27541.1 vs. NCBI_GenBank
Match: gi|519030188|ref|WP_020186063.1| (hypothetical protein [Methylopila sp. 73B])

HSP 1 Score: 202.986 bits (515), Expect = 1.663e-63
Identity = 91/136 (66.91%), Postives = 113/136 (83.09%), Query Frame = 0
Query:   58 EARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYI 193
            + RPP PP+TFETAT K RKA+DAWNT +P+ V+LAYT DS WRNR +FF GR AI AFL +KWAKE DY L+KELW FH NRI+ RF+YEWHD  G W+RS+GNEQWE+D +GLM+RR+ASINDV I+ES+R+++
Sbjct:    3 DTRPPLPPFTFETATLKARKAEDAWNTHDPEKVSLAYTEDSTWRNRSDFFTGRPAIVAFLTRKWAKELDYRLIKELWAFHDNRIAVRFQYEWHDAAGDWFRSYGNEQWEFDERGLMRRREASINDVVIRESQRKFL 138          
BLAST of EWM27541.1 vs. NCBI_GenBank
Match: gi|1110674190|ref|WP_071902744.1| (DUF1348 domain-containing protein [Cystobacter ferrugineus] >gi|1109185313|gb|OJH36251.1| hypothetical protein BON30_34410 [Cystobacter ferrugineus])

HSP 1 Score: 201.445 bits (511), Expect = 7.762e-63
Identity = 93/136 (68.38%), Postives = 108/136 (79.41%), Query Frame = 0
Query:   58 EARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYI 193
            E RPP PP+T+ETA EKVRKA+DAWN+R+P  VALAYT DS WRNR EF QGR AI   L +KW KE DY L+KELW FH NRIS RF+YEWHD  G W+RSHGNEQWE+D  GLM+RR+ASINDV I  SER+++
Sbjct:    3 ELRPPLPPFTYETAVEKVRKAEDAWNSRDPQRVALAYTQDSRWRNRSEFVQGRPAIIGLLTRKWEKELDYRLIKELWAFHQNRISVRFQYEWHDSTGNWFRSHGNEQWEFDENGLMRRREASINDVPISASERKFL 138          
BLAST of EWM27541.1 vs. NCBI_GenBank
Match: gi|506412073|ref|WP_015931792.1| (DUF1348 domain-containing protein [Methylobacterium nodulans] >gi|219949791|gb|ACL60183.1| protein of unknown function DUF1348 [Methylobacterium nodulans ORS 2060])

HSP 1 Score: 201.06 bits (510), Expect = 1.009e-62
Identity = 97/154 (62.99%), Postives = 116/154 (75.32%), Query Frame = 0
Query:   58 EARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYIRNPSTGLVEYPLGHPSQT 211
            E+RPPFPPYT ETA  K R A+DAWN R+P  V+LAYTPDS WRNR EFF GREAI AFL +KWA+E DY L+KE+W FH NRI+ RF YEWHD  G W+RSHGNEQWE+D  GLM+RR+ASINDV I+E++R++       L   P GHP  +
Sbjct:    3 ESRPPFPPYTAETAARKARAAEDAWNHRDPVRVSLAYTPDSRWRNRAEFFSGREAIVAFLERKWARELDYRLIKEVWAFHQNRIAVRFAYEWHDDSGNWFRSHGNEQWEFDDSGLMRRREASINDVPIRETDRKF----HWPLGPRPEGHPGLS 152          
BLAST of EWM27541.1 vs. NCBI_GenBank
Match: gi|517042945|ref|WP_018231763.1| (DUF1348 domain-containing protein [Thioalkalivibrio thiocyanodenitrificans])

HSP 1 Score: 200.29 bits (508), Expect = 2.098e-62
Identity = 91/134 (67.91%), Postives = 113/134 (84.33%), Query Frame = 0
Query:   60 RPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYI 193
            RPPFPP+T ETA +KVR A++AWNT +P+ V+LAYT DS WRNR EFFQGREAI AFL++KWA+E DY L+KELW FH NRI+ RF+YEWHD  G W+R+HGNE WE+D +GLM+RR+ASINDV I ESER+++
Sbjct:    4 RPPFPPFTRETAIQKVRMAENAWNTGDPEKVSLAYTEDSRWRNRAEFFQGREAIVAFLKRKWARELDYRLIKELWAFHDNRIAVRFQYEWHDDSGNWFRAHGNENWEFDERGLMRRREASINDVPIGESERKFL 137          
BLAST of EWM27541.1 vs. NCBI_GenBank
Match: gi|516220856|ref|WP_017624819.1| (hypothetical protein [Nocardiopsis chromatogenes])

HSP 1 Score: 199.904 bits (507), Expect = 2.169e-62
Identity = 98/150 (65.33%), Postives = 112/150 (74.67%), Query Frame = 0
Query:   58 EARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYI--RNPSTGLVEYPL 205
            E RPPFPP+T ETA +KV+ A+DAWNTR+P+ VALAYTPDS WRNRD F QGRE I AFL +KW +E DY L K LW FHGNRI+ RF+YE  D  GQWWRSHGNEQWE+D  GLM RR+ASINDV I ES+RR    R      +E PL
Sbjct:    3 EPRPPFPPFTEETALQKVQAAEDAWNTRDPERVALAYTPDSVWRNRDVFLQGREEIAAFLARKWERELDYALRKSLWAFHGNRIAVRFQYECRDTSGQWWRSHGNEQWEFDTNGLMLRREASINDVPIAESDRRIFGTRPKEEYGIEIPL 152          
The following BLAST results are available for this feature:
BLAST of EWM27541.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109808|gb|EWM27541.1|7.897e-157100.00hypothetical protein Naga_100015g44 [Nannochlorops... [more]
gi|553188941|ref|XP_005854898.1|5.043e-71100.00response regulator receiver domain-containing prot... [more]
gi|516126703|ref|WP_017557283.1|1.025e-6465.56DUF1348 domain-containing protein [Nocardiopsis ba... [more]
gi|971872120|ref|WP_058940933.1|2.511e-6465.79DUF1348 domain-containing protein [Streptomyces ka... [more]
gi|516106407|ref|WP_017536987.1|3.682e-6464.90DUF1348 domain-containing protein [Nocardiopsis ha... [more]
gi|519030188|ref|WP_020186063.1|1.663e-6366.91hypothetical protein [Methylopila sp. 73B][more]
gi|1110674190|ref|WP_071902744.1|7.762e-6368.38DUF1348 domain-containing protein [Cystobacter fer... [more]
gi|506412073|ref|WP_015931792.1|1.009e-6262.99DUF1348 domain-containing protein [Methylobacteriu... [more]
gi|517042945|ref|WP_018231763.1|2.098e-6267.91DUF1348 domain-containing protein [Thioalkalivibri... [more]
gi|516220856|ref|WP_017624819.1|2.169e-6265.33hypothetical protein [Nocardiopsis chromatogenes][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3117rna3117Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications