rna3110, rna3110 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3110
Unique Name	rna3110
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	829
Alignment location	CM002460.1:733376..735754 +

Link to JBrowse

Properties


Property Name	Value
Product	arginyl-trna synthetase
Orig transcript id	gnl\|cribi\|Naga_100015g52.6353.mrna
Orig protein id	gnl\|cribi\|Naga_100015g52.6353
Gene	ARGRS
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:733376..735754 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ARGRS	gene2988	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3110	rna3110-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27537.1	cds3102	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:733376..735754+
coding sequence from alignment at CM002460.1:733376..735754+

mRNA sequence

>rna3110 ID=rna3110|Name=rna3110|organism=Nannochloropsis gaditana|type=mRNA|length=829bp
TATACAATTGTGACATTTAAAATGGTGAATTTTCGAAAATGGCACCCCAA
ATCCTCCAACAAGCTGGCGCCCAGTACATAACCTCCTCCCTAACTCCCTT
TCCCCCCCCGCCTAGAGCCACATAGAACCAGGCGTAAATTTTTCAATCTC
ATTTCACCCAAAGCTCTCCTTACTGTCCCACGCGCATGCACTCTTGATTC
TAGGTTGATTATGAAGGAAAACGCTAACCCTACTATCTATGCCGTGGAGC
GTAAGCGCAGGGATCACCCGATAAGCAGCCACGTGGAAACAAATTGGGAC
GAGGATGCTCGAGACGCCTTTACAGCGGAGGAGGTGTTCGAACTAATCCG
AAATTTGAACGATCCCGAGCACCCGTTGACTCTAGAGCAGCTGAAGGTAG
CCACGCTCGAAAATGTGCGCGTGGACGACTCCCGCTCCACGATCAGTATC
CGATTTACACCGACTATTCCTCATTGCTCCATGGCGACCCTTATTGGCTT
ATGTATACGTGTAAAGTTGTTGCGGTCATTACCACAGCGCTTTAAGGTGC
GCGTAGAGGTAAGTCCGGGGGCGCACGCATCAGAAGCTGCAGTGAACAAG
CAACTCAATGACAAAGAGCGAGTGGCAGCAGCTCTGGAGAATGCTCACTT
GTTGGGTGTTGTAAATAAGTGTCTGGAGGAGACGGAACACTCAGGCGTGG
ACCTCAGACAGTAAACGTTGTAAGCGGAAGTTACATATGTACATGATCAT
ATCCGGGAATGGCTTGCTTGAAGACGCCTCTCACCTTCAAAATATGAAAA
ATAAATTTCGTCAAGGTTCAAGTCGATCA

protein sequence of rna3110

>rna3110-protein ID=rna3110-protein|Name=rna3110|organism=Nannochloropsis gaditana|type=polypeptide|length=709bp
MRLMSRLFMLLFSQQLLSSSRLVALTATRSIRRGGRHLFKGQQHSHPQLG
FLHIGAGFRPILPPSMSSSSFYPSCKGIFSFSSSGSSPPHKRSRTVQLSA
TTTPSEHLPSLLEASNYRRALTYQVRDSLREAFGPDADGADPMVTPATRP
EFGDYQCNAALALAKRLKAKPRDVAEKLKDALESRTQKWCEPLEIAGPGF
INVRMTPAFVESRLNAMLSDQTGRLGVPRPARAQRVVVDFSSPNIAKEMH
VGHLRSTVIGDTLARVLEFLGHGVLRLNHVGDWGTQFGMLITHLKDRHPD
VLAEGEAAAQTDLGDLVEFYKTAKQRFDVEETFKARSRQEVVNLQRGEPA
TLQAWRTLCQLSRVEFQKIYDALGVRLEERGESFYNPLLAQVLSDLDASG
LLKESEGARVVYLEGYQTREGEAQPFIVQKSDGGFLYATTDLAAARHRAL
EEKAERILYVTDAGQASHFDQVFQVARQASLVPPEVQLKHVPFGLVQGED
GKKFKTRAGETVRLKDLLDEAVRIARDDLLKRAEEGTQPLPEDLERSARI
IGLGAVKYADLSLNRESDYKFSYKKMLSLSGNTAPYMLYAYARIQSILRK
GNNGENEDRLSQGSTPPVVLAEPAEMNLARQLIKLTELLQRVEAELYPHI
LCEYMYDLCQKFNQFYEACQVNNAPTPDLVRSRRALCVLTAQVLRLCLDL
LGIEVLERM

mRNA from alignment at CM002460.1:733376..735754+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3110 ID=rna3110|Name=rna3110|organism=Nannochloropsis gaditana|type=mRNA|length=2379bp|location=Sequence derived from alignment at CM002460.1:733376..735754+ (Nannochloropsis gaditana)
ATGTCACAATTGTATACGACAGACGTGGCAGACGATGCGTCTTATGTCAA
GGCTTTTCATGCTATTGTTTTCGCAGCAGCTTCTTAGCAGTAGCCGACTT
GTCGCATTGACTGCCACACGAAGCatcaggagaggaggtcgacaTCTCTT
TAAAGGGCAGCAACACAGGTACGATAGCGAGAGACAATCTGACGTATGTT
TTATGCTGTATATTTTTTTGCTCGTTTTCTTAAGATGTACGCATGCTCCC
GAAAGCACTGCTATAATATGTCGAGGTGCAACCGTATTTTTATCATTAAC
GATCGCCTGTCGACACTTCCTTTTTCAAGCCACCCACAGCTCGGATTTCT
GCACATTGGGGCAGGCTTTCGGCCTATCCTTCCGCCAAGTATGTCCTCAT
CGTCGTTTTATCCCTCTTGTAAAGgaattttttctttctcctcttccggt
TCCTCTCCACCGCACAAGCGCTCTCGTACCGTCCAACTGTCCGCTACGAC
GACGCCCTCCGAACACTTACCATCCCTTCTCGAAGCAAGCAACTACCGAC
GTGCGCTCACATATCAAGTCCGTGATTCTTTACGTGAGGCTTTTGGGCCT
GACGCGGACGGTGCCGACCCAATGGTGACACCGGCAACGCGTCCTGAGTT
CGGGGATTATCAGTGCAACGCCGCCTTAGCCCTTGCCAAACGGCTGAAAG
CGAAGCCACGAGACGTGGCGGAGAAACTGAAAGACGCACTAGAAAGTCGG
ACGCAAAAATGGTGCGAGCCGTTGGAAATCGCAGGACCAGGTTTTATTAA
CGTGCGGATGACGCCTGCGTTCGTGGAGAGCCGCCTGAACGCGATGCTGT
CCGACCAGACAGGTCGCCTGGGCGTTCCCAGACCCGCGCGAGCACAACGT
GTGGTGGTGGACTTTTCCAGTCCCAACATCGCTAAGGAGATGCACGTGGG
ACATTTGCGAAGCACGGTGATTGGGGACACGCTGGCACGGGTCTTGGAAT
TCTTGGGCCATGGGGTGCTTCGGCTCAATCACGTGGGCGACTGGGGCACC
CAGTTCGGGATGCTGATCACGCATTTGAAAGACCGGCACCCAGATGTATT
ggccgagggcgaggcggcggcgcAGACGGATCTGGGCGACCTGGTTGAGT
TCTACAAGACAGCCAAGCAGCGCTTCGACGTGGAAGAGACGTTCAAAGCG
CGCAGCAGGCAGGAAGTAGTGAACCTTCAGCGTGGAGAGCCGGCCACACT
GCAGGCCTGGCGCACGCTTTGTCAACTCTCCCGGGTCGAGTTTCAAAAGA
TCTACGACGCCCTGGGAGTGCGtctggaggagcggggggagtCGTTCTAC
AACCCATTGCTGGCCCAAGTGCTTTCAGATTTGGACGCCTCGGGCCTGCT
caaagagagcgagggcgcTCGGGTCGTTTATCTAGAAGGGTACCAGACCc
gtgagggggaggcgcagcCCTTCATCGTCCAGAAGTCGGACGGGGGTTTT
TTGTACGCAACGACCGACCTAGCGGCGGCGCGTCACCGggctctggagga
gaaggcagaaCGTATATTGTACGTGACCGACGCGGGGCAGGCCTCGCATT
TCGACCAGGTCTTTCAAGTCGCCCGCCAGGCTTCTTTGGTGCCTCCAGAG
GTGCAGTTGAAGCACGTGCCTTTTGGGCTGGtccaaggggaggatgggaa
gaaaTTCAAGACACGGGCCGGGGAGACGGTTAGGCTGAAGGATTTACTGG
ACGAAGCCGTGCGTATTGCACGTGATGATTTGTTAAAGCGGGCGGAAGAG
GGCACCCAGCCTCTGCCAGAAGATTTGGAGAGAAGCGCGAGGATAATCGG
CCTGGGCGCGGTCAAATATGCTGACCTTTCTCTAAATAGGGAATCAGATT
ACAAGTTTTCCTACAAAAAGATGCTCTCGCTCAGTGGAAATACGGCACCC
TACATGTTGTACGCCTACGCCCGAATTCAAAGTATACTTCGTAAAGGCAA
CAACGGTGAAAATGAGGATAGGCTTTCTCAGGGGAGCACGCCGCCAGTCG
TGCTTGCAGAGCCGGCGGAGATGAATTTGGCCCGACAACTCATCAAGCTT
ACCGAGCTCTTGCAGCGGGTTGAGGCTGAATTATACCCGCACATACTCTG
TGAGTACATGTACGATTTATGTCAGAAATTCAACCAGTTTTACGAGGCCT
GCCAGGTGAACAACGCACCGACCCCTGATCTGGTTCGTTCACGGCGCGCC
CTCTGCGTTCTCACAGCTCAAGTGCTACGTCTATGTCTAGATTTGCTCGG
AATCGAGGTACTAGAACGAATGTAATGCCATCTTAAAATTCAcgaaggaa
atggagaaTAAAACTGAAACAGACCGTCA

Coding sequence (CDS) from alignment at CM002460.1:733376..735754+

>rna3110 ID=rna3110|Name=rna3110|organism=Nannochloropsis gaditana|type=CDS|length=4260bp|location=Sequence derived from alignment at CM002460.1:733376..735754+ (Nannochloropsis gaditana)
ATGCGTCTTATGTCAAGGCTTTTCATGCTATTGTTTTCGCAGCAGCTTCT
TAGCAGTAGCCGACTTGTCGCATTGACTGCCACACGAAGCatcaggagag
gaggtcgacaTCTCTTTAAAGGGCAGCAACACAGCCACCCACAGCTCGGA
TTTCTGCACATTGGGGCAGGCTTTCGGCCTATCCTTCCGCCAAGTATGTC
CTCATCGTCGTTTTATCCCTCTTGTAAAGgaattttttctttctcctctt
ccggtTCCTCTCCACCGCACAAGCGCTCTCGTACCGTCCAACTGTCCGCT
ACGACGACGCCCTCCGAACACTTACCATCCCTTCTCGAAGCAAGCAACTA
CCGACGTGCGCTCACATATCAAGTCCGTGATTCTTTACGTGAGGCTTTTG
GGCCTGACGCGGACGGTGCCGACCCAATGGTGACACCGGCAACGCGTCCT
GAGTTCGGGGATTATCAGTGCAACGCCGCCTTAGCCCTTGCCAAACGGCT
GAAAGCGAAGCCACGAGACGTGGCGGAGAAACTGAAAGACGCACTAGAAA
GTCGGACGCAAAAATGGTGCGAGCCGTTGGAAATCGCAGGACCAGGTTTT
ATTAACGTGCGGATGACGCCTGCGTTCGTGGAGAGCCGCCTGAACGCGAT
GCTGTCCGACCAGACAGGTCGCCTGGGCGTTCCCAGACCCGCGCGAGCAC
AACGTGTGGTGGTGGACTTTTCCAGTCCCAACATCGCTAAGGAGATGCAC
GTGGGACATTTGCGAAGCACGGTGATTGGGGACACGCTGGCACGGGTCTT
GGAATTCTTGGGCCATGGGGTGCTTCGGCTCAATCACGTGGGCGACTGGG
GCACCCAGTTCGGGATGCTGATCACGCATTTGAAAGACCGGCACCCAGAT
GTATTggccgagggcgaggcggcggcgcAGACGGATCTGGGCGACCTGGT
TGAGTTCTACAAGACAGCCAAGCAGCGCTTCGACGTGGAAGAGACGTTCA
AAGCGCGCAGCAGGCAGGAAGTAGTGAACCTTCAGCGTGGAGAGCCGGCC
ACACTGCAGGCCTGGCGCACGCTTTGTCAACTCTCCCGGGTCGAGTTTCA
AAAGATCTACGACGCCCTGGGAGTGCGtctggaggagcggggggagtCGT
TCTACAACCCATTGCTGGCCCAAGTGCTTTCAGATTTGGACGCCTCGGGC
CTGCTcaaagagagcgagggcgcTCGGGTCGTTTATCTAGAAGGGTACCA
GACCcgtgagggggaggcgcagcCCTTCATCGTCCAGAAGTCGGACGGGG
GTTTTTTGTACGCAACGACCGACCTAGCGGCGGCGCGTCACCGggctctg
gaggagaaggcagaaCGTATATTGTACGTGACCGACGCGGGGCAGGCCTC
GCATTTCGACCAGGTCTTTCAAGTCGCCCGCCAGGCTTCTTTGGTGCCTC
CAGAGGTGCAGTTGAAGCACGTGCCTTTTGGGCTGGtccaaggggaggat
gggaagaaaTTCAAGACACGGGCCGGGGAGACGGTTAGGCTGAAGGATTT
ACTGGACGAAGCCGTGCGTATTGCACGTGATGATTTGTTAAAGCGGGCGG
AAGAGGGCACCCAGCCTCTGCCAGAAGATTTGGAGAGAAGCGCGAGGATA
ATCGGCCTGGGCGCGGTCAAATATGCTGACCTTTCTCTAAATAGGGAATC
AGATTACAAGTTTTCCTACAAAAAGATGCTCTCGCTCAGTGGAAATACGG
CACCCTACATGTTGTACGCCTACGCCCGAATTCAAAGTATACTTCGTAAA
GGCAACAACGGTGAAAATGAGGATAGGCTTTCTCAGGGGAGCACGCCGCC
AGTCGTGCTTGCAGAGCCGGCGGAGATGAATTTGGCCCGACAACTCATCA
AGCTTACCGAGCTCTTGCAGCGGGTTGAGGCTGAATTATACCCGCACATA
CTCTGTGAGTACATGTACGATTTATGTCAGAAATTCAACCAGTTTTACGA
GGCCTGCCAGGTGAACAACGCACCGACCCCTGATCTGGTTCGTTCACGGC
GCGCCCTCTGCGTTCTCACAGCTCAAGTGCTACGTCTATGTCTAGATTTG
CTCGGAATCGAGGTACTAGAACGAATGTAAATGCGTCTTATGTCAAGGCT
TTTCATGCTATTGTTTTCGCAGCAGCTTCTTAGCAGTAGCCGACTTGTCG
CATTGACTGCCACACGAAGCatcaggagaggaggtcgacaTCTCTTTAAA
GGGCAGCAACACAGCCACCCACAGCTCGGATTTCTGCACATTGGGGCAGG
CTTTCGGCCTATCCTTCCGCCAAGTATGTCCTCATCGTCGTTTTATCCCT
CTTGTAAAGgaattttttctttctcctcttccggtTCCTCTCCACCGCAC
AAGCGCTCTCGTACCGTCCAACTGTCCGCTACGACGACGCCCTCCGAACA
CTTACCATCCCTTCTCGAAGCAAGCAACTACCGACGTGCGCTCACATATC
AAGTCCGTGATTCTTTACGTGAGGCTTTTGGGCCTGACGCGGACGGTGCC
GACCCAATGGTGACACCGGCAACGCGTCCTGAGTTCGGGGATTATCAGTG
CAACGCCGCCTTAGCCCTTGCCAAACGGCTGAAAGCGAAGCCACGAGACG
TGGCGGAGAAACTGAAAGACGCACTAGAAAGTCGGACGCAAAAATGGTGC
GAGCCGTTGGAAATCGCAGGACCAGGTTTTATTAACGTGCGGATGACGCC
TGCGTTCGTGGAGAGCCGCCTGAACGCGATGCTGTCCGACCAGACAGGTC
GCCTGGGCGTTCCCAGACCCGCGCGAGCACAACGTGTGGTGGTGGACTTT
TCCAGTCCCAACATCGCTAAGGAGATGCACGTGGGACATTTGCGAAGCAC
GGTGATTGGGGACACGCTGGCACGGGTCTTGGAATTCTTGGGCCATGGGG
TGCTTCGGCTCAATCACGTGGGCGACTGGGGCACCCAGTTCGGGATGCTG
ATCACGCATTTGAAAGACCGGCACCCAGATGTATTggccgagggcgaggc
ggcggcgcAGACGGATCTGGGCGACCTGGTTGAGTTCTACAAGACAGCCA
AGCAGCGCTTCGACGTGGAAGAGACGTTCAAAGCGCGCAGCAGGCAGGAA
GTAGTGAACCTTCAGCGTGGAGAGCCGGCCACACTGCAGGCCTGGCGCAC
GCTTTGTCAACTCTCCCGGGTCGAGTTTCAAAAGATCTACGACGCCCTGG
GAGTGCGtctggaggagcggggggagtCGTTCTACAACCCATTGCTGGCC
CAAGTGCTTTCAGATTTGGACGCCTCGGGCCTGCTcaaagagagcgaggg
cgcTCGGGTCGTTTATCTAGAAGGGTACCAGACCcgtgagggggaggcgc
agcCCTTCATCGTCCAGAAGTCGGACGGGGGTTTTTTGTACGCAACGACC
GACCTAGCGGCGGCGCGTCACCGggctctggaggagaaggcagaaCGTAT
ATTGTACGTGACCGACGCGGGGCAGGCCTCGCATTTCGACCAGGTCTTTC
AAGTCGCCCGCCAGGCTTCTTTGGTGCCTCCAGAGGTGCAGTTGAAGCAC
GTGCCTTTTGGGCTGGtccaaggggaggatgggaagaaaTTCAAGACACG
GGCCGGGGAGACGGTTAGGCTGAAGGATTTACTGGACGAAGCCGTGCGTA
TTGCACGTGATGATTTGTTAAAGCGGGCGGAAGAGGGCACCCAGCCTCTG
CCAGAAGATTTGGAGAGAAGCGCGAGGATAATCGGCCTGGGCGCGGTCAA
ATATGCTGACCTTTCTCTAAATAGGGAATCAGATTACAAGTTTTCCTACA
AAAAGATGCTCTCGCTCAGTGGAAATACGGCACCCTACATGTTGTACGCC
TACGCCCGAATTCAAAGTATACTTCGTAAAGGCAACAACGGTGAAAATGA
GGATAGGCTTTCTCAGGGGAGCACGCCGCCAGTCGTGCTTGCAGAGCCGG
CGGAGATGAATTTGGCCCGACAACTCATCAAGCTTACCGAGCTCTTGCAG
CGGGTTGAGGCTGAATTATACCCGCACATACTCTGTGAGTACATGTACGA
TTTATGTCAGAAATTCAACCAGTTTTACGAGGCCTGCCAGGTGAACAACG
CACCGACCCCTGATCTGGTTCGTTCACGGCGCGCCCTCTGCGTTCTCACA
GCTCAAGTGCTACGTCTATGTCTAGATTTGCTCGGAATCGAGGTACTAGA
ACGAATGTAA

Synonyms

Publications