rna3107, rna3107 (mRNA) Nannochloropsis gaditana

Overview
Namerna3107
Unique Namerna3107
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1206
Alignment locationCM002460.1:729625..730800 -

Link to JBrowse

Properties
Property NameValue
Productmethyltransferase type 11
Orig transcript idgnl|cribi|Naga_100015g55.6352.mrna
Orig protein idgnl|cribi|Naga_100015g55.6352
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:729625..730800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100015g55gene2985Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27536.1cds3099Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3107rna3107-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3107 ID=rna3107|Name=rna3107|organism=Nannochloropsis gaditana|type=mRNA|length=1206bp
CCTGCCGGGTGCGAAGCATGTAGCTTATCAGGCCGCACAGTGACCAGTTT
CTTCATCTTAGTATGGCCGTGTGTTTGAAGTGAGAGCGCGTCCATGGAAA
CGCGACTTTGGTTAAGCCTGGTGAGCATCGTCTTTTGACAGCACCATTTA
ACGACCACTTCTCCCTGGCATAGGCGACATCCATCCAATTGAACGCATAA
TTCGAAGATTTCTCTCCTTCTCTCCACGTGCGATAGGATAGAATGCCACA
AATGACTTGGGAAGAGACGCGGAGCATCATGTCCGAGGTCCAAGAGCTCT
TTGCAGGGCGTGAGGACACGAATACAATCGAAGAGATCCGGGAATTGCAA
AGAGAGATCAAGGAGACCGTACAGTCACGTGAAGCTGGAGCTGCGACTTG
CATCCGCGGTTTGACTGCAGAAGTCAACGTTTCGCAAGCTGCAGTTGACG
CTCTGCCGGCTGCGGAAGAGGCAGACAAATCCCGAAAAGCGGCATTGGAA
GGAGAGAAAGGAGAGACGGAGGAAGCACTAGTTGCGATGAACAAAAAGAT
CGCAGATATGCGACAAAATGTTGAGTGTATGACAGTTGAGGCGGAAGAAG
TGGAGGAGAAGGCGAAAGGAATTGAGCATGCCAGCCAAGACCAAGCGCCG
CGTGTCTTGCACGCTCTAAGCCTGTACGCCAACATCACTGGGATTCGATG
GAAATACGACGACGGCGAGAAGAGTCACTTGATCCGAGGATTCGTCTCTT
TGCCTGAAAAAGAAGAGGTGCGGGAGTTCACCCTGGACTGTCACAAAGAG
AGCAGCTTCAAGATAGCCAATTCCATATGGAACATGATCGACCCCTGATC
CTATTTGATGCCGCTTTCGAAGCCCAAGAGGGGAAGAGAATAGGAGTTAT
GCCGCAGTAGGTGATGTGCACGGCGTGCGAAGAACTAAACTGTCAAAGCG
TACGAATATGAGTCGGAAAAGTAAGCAACCGGCGTCGGATGCCGGTTTCC
TATCTGGTCAAGATTTCCGAAGAGATATGCCTAGCTGCTCGCTTTTTGCG
AGCAAATGAACTTTATGTGTCTTGTGCTCACGTTGGGGTTGAGATGTGGC
GGCCCTGCTAATCAAACAAGCGGGTTCAATACGTTGCAGTTAAGGCGAAT
GTGACTGAGCGGCTGCATCGTTCTGTAAAAAAAACAAATTACACCTAAGT
TTCAGG
back to top

protein sequence of rna3107

>rna3107-protein ID=rna3107-protein|Name=rna3107|organism=Nannochloropsis gaditana|type=polypeptide|length=298bp
MQDNGSPSHPCEEQAMVSNQEAHYDDVAKEYNKAWFYEDGTDYQQWLVRS
LQTRLQAAPDSRVVDMGGGTGNFSAAFYRECELEEPVLCVDPSRALLAQA
QRHVSEVEPLLADGLSFVGMTAYNQAYDRILFKEVVHHFPRDELGVVFAG
TFQQLRPGGRLVVMTRPHDSTHYPFFHAAHQTWKAVQQDETIYAQELRTA
GFDVSVDHADYTVTMPLSRWLSMVESRFWSTLHGFSDAEMAEGLKEIKAR
FLRDSQSASSTTHREQGDHKGEALRCEERNDPPISFPDRLVFITGLKA
back to top

mRNA from alignment at CM002460.1:729625..730800-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3107 ID=rna3107|Name=rna3107|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp|location=Sequence derived from alignment at CM002460.1:729625..730800- (Nannochloropsis gaditana)
GTTGCTCGTCGACCATGACCTTCCAGCCACGCAAAAGCGTTTACTGCATG
GTAGATATCCTGTGCGTTGTAAATAGCAAAGAAGTATGGCTTTATTCCTG
TCGTGCCATCCATCTCGTGCGCCGTGTCGAGGCCTCATCGGGATGCAACC
ACCTGCTACGTGACAACGGATAGCAGCGAGGTCTATGGCCCATTCCACCT
CAACACAGCGACCGCTGACAAATGCAGGACAACGGCTCACCATCCCATCC
ATGCGAAGAACAGGCGATGGTGTCAAACCAAGAAGCACACTATGACGATG
TTGCCAAGGAATACAATAAGGCATGGTTTTACGAGGACGGCACAGACTAC
CAACAGTGGCTAGTGCGAAGCTTACAAACTCGCTTACAGGCTGCACCCGA
CAGCCGTGTAGTCGACATGGGTGGAGGCACGGGCAATTTCAGCGCCGCCT
TCTACAGGGAATGTGAATTAGAGGAGCCTGTTCTGTGCGTGGATCCCTCC
AGGGCGCTACTGGCGCAGGCGCAGAGACATGTATCTGAAGTGGAGCCTTT
ATTGGCCGACGGTTTATCCTTCGTAGGCATGACAGCCTACAACCAAGCAT
ACGACCGTATTCTATTCAAGGAGGTCGTGCATCACTTTCCACGAGACGAA
TTGGGCGTCGTATTTGCGGGTACTTTCCAGCAACTGCGCCCGGGAGGTCG
GCTCGTTGTCATGACGCGCCCGCATGACTCAACCCACTACCCCTTTTTCC
ACGCAGCACATCAGACATGGAAAGCGGTGCAGCAAGATGAGACCATCTAT
GCTCAGGAATTAAGAACCGCAGGCTTTGACGTCTCTGTAGACCATGCGGA
TTACACGGTGACCATGCCTCTTTCTCGATGGCTGAGCATGGTGGAGAGTC
GCTTCTGGTCGACCTTGCATGGATTTTCGGACGCGGAGATGGCGGAGGGC
TTGAAGGAAATTAAAGCGCGATTTCTGAGGGACTCTCAAAGTGCATCTTC
GACAACACATCGAGAGCAAGGTGATCACAAGGGGGAAGCGCTGCGTTGTG
AAGAGAGGAACGACCCGCCTATCTCCTTCCCGGATCGGCTCGTCTTCATC
ACGGGCCTAAAAGCTTAAAGGAGGTTACGCTTGAGGACATTTTAGAGATT
TCAAGGAAAGAAGACAATGCGTCAGT
back to top

Coding sequence (CDS) from alignment at CM002460.1:729625..730800-

>rna3107 ID=rna3107|Name=rna3107|organism=Nannochloropsis gaditana|type=CDS|length=897bp|location=Sequence derived from alignment at CM002460.1:729625..730800- (Nannochloropsis gaditana)
ATGCAGGACAACGGCTCACCATCCCATCCATGCGAAGAACAGGCGATGGT
GTCAAACCAAGAAGCACACTATGACGATGTTGCCAAGGAATACAATAAGG
CATGGTTTTACGAGGACGGCACAGACTACCAACAGTGGCTAGTGCGAAGC
TTACAAACTCGCTTACAGGCTGCACCCGACAGCCGTGTAGTCGACATGGG
TGGAGGCACGGGCAATTTCAGCGCCGCCTTCTACAGGGAATGTGAATTAG
AGGAGCCTGTTCTGTGCGTGGATCCCTCCAGGGCGCTACTGGCGCAGGCG
CAGAGACATGTATCTGAAGTGGAGCCTTTATTGGCCGACGGTTTATCCTT
CGTAGGCATGACAGCCTACAACCAAGCATACGACCGTATTCTATTCAAGG
AGGTCGTGCATCACTTTCCACGAGACGAATTGGGCGTCGTATTTGCGGGT
ACTTTCCAGCAACTGCGCCCGGGAGGTCGGCTCGTTGTCATGACGCGCCC
GCATGACTCAACCCACTACCCCTTTTTCCACGCAGCACATCAGACATGGA
AAGCGGTGCAGCAAGATGAGACCATCTATGCTCAGGAATTAAGAACCGCA
GGCTTTGACGTCTCTGTAGACCATGCGGATTACACGGTGACCATGCCTCT
TTCTCGATGGCTGAGCATGGTGGAGAGTCGCTTCTGGTCGACCTTGCATG
GATTTTCGGACGCGGAGATGGCGGAGGGCTTGAAGGAAATTAAAGCGCGA
TTTCTGAGGGACTCTCAAAGTGCATCTTCGACAACACATCGAGAGCAAGG
TGATCACAAGGGGGAAGCGCTGCGTTGTGAAGAGAGGAACGACCCGCCTA
TCTCCTTCCCGGATCGGCTCGTCTTCATCACGGGCCTAAAAGCTTAA
back to top
Synonyms
Publications