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Properties
| Property Name | Value |
|---|
| Product | Kinetochore-Ndc80 subunit Spc24 |
| Orig transcript id | gnl|cribi|Naga_100015g56.6350.mrna |
| Orig protein id | gnl|cribi|Naga_100015g56.6350 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:727915..729623 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3106 ID=rna3106|Name=rna3106|organism=Nannochloropsis gaditana|type=mRNA|length=1590bp
CGTCAGTCTATTTGAAATTTTGTTGAGCTGTACCTTAAAGTCATGCCAGG
TGCATCGAAGTCGTTTGCTTGGTGTGAGACAAATCCCCTTCTCTTTTTAT
TCACTGACACGCAGCACTTCCTTTCCCTATATTAACGCCGCTTTTTAATG
CGAAGATGGAGCTCCCTGCGCCATCGACCAAGCGGTTCGACGCACCACGG
AGGGATACTGGAAATATGAGGGTGGCTGTAGAGAACGTGGAGGAGCAGCC
TGTGCACATGCCTCTTGGCTCAGCCACGCATTTCGAAAATGCGATCAGTA
CCGCCAAGTCTATTATGGCAGGAGGACTGGCAGGCATGGTGGCGAAAAGT
GTTGTGGCACCAGTGGACCGGATCAAAATTTTGTTTCAAGTTTCTTCTGA
GGAATTTTGTCTGCGGAAAGTCCTCTTTATAATGAGGCGGATATACCATG
AGGAGGGCTTCGGAGGGCTATGGAAGGGGAACAGCGCAACTATGCTACGA
GTGTTCCCCTATGCCGGGATTCAATTCATGACTTTCGACACCGTGAAGGC
GTACATTTTGAAGATGAACGGGGAGGTTGAAGGTGGGCAGCTGACGAACT
TGGAGAGCCTGTTCGCTGGGTCTTTTGCGGGGTTCGTTTCTTGTACTTGT
ACGTATCCTTTGGATTTCGCAAGAGCTCGGCTGGCCGTGGAGGGTGCACA
AGGGGCCCAGTACCTTCGGAGAAATATGCCGGCTGGTGGCAGAGGAGTGG
GGGTCGAAAGAGCCTCCACGTCGTCAGTATCACATGCAGTTCAGGATGGG
AAAAAGACTGGAGGAAAGCTGGGAAGTAAGGGGGTTCTCGCGAATGGTGC
TGGTCGCGCCCATCACACCGTCCTGGATGTGTTCAAGGCTGCCTACCGAG
AAGGAGGGATCCTCTCTCTGTACAGAGGCGTCACCCCTACCTTACTGGGC
ATTTTGCCTTACGCCGGCATAGCCTTCACAATAAATGACAAGGCGAATCA
TCAGATCCATCGTTTGACCGGGGAGGAGCCAAGCACTCTGCAAAAGCTCG
GGTGCGGTGCCTTTGCGGGGCTCGCCGCCCAGTCGGCCACCTACCCGCTG
GACGTGGTCCGGAGACGGATGCAGACGGCTGGAGTGAAGTCTCCGGAAAT
GCCTGTGCAGAGAGGGGATGTAGAAGGGAGGGAAAAAGGATATGCAGCTG
TAGGAGCAGGGGAACCCCGGCGTGGCCATGTGCCCCTCCGAGCAACACCG
TCTAGTGGGTACGACCCGCTGTCAGCAAGCATGCGGGCGGTACTTCGGGA
AGTATACACACAGGAAGGAGTAAAAGGCTTGTTCAAAGGCTTGTCGATGA
ATTGGATAAAGGGGCCTGTGGCTTTGGGGATAAGCTTCACAACTTTTGAT
TTCTTAAAACGTCTTCTCAACGTGCAACAGCCGGGAAAGAAGGCACCGAT
ATAGTATGATTGGGGCCGGCGGAGGAGGAGTACGGGAGACAAGGTTTTTA
AAGCAGCGGCTTTGAAACAGTAAATGACAAAATCAAATCATATCGCCATG
TACTTGAGATGTTGTGTCAGTAAGATGAAAAATTGATTGA back to topprotein sequence of rna3106 >rna3106-protein ID=rna3106-protein|Name=rna3106|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
MPQMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGA
ATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMN
KKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITG
IRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMID
P back to topmRNA from alignment at CM002460.1:727915..729623+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3106 ID=rna3106|Name=rna3106|organism=Nannochloropsis gaditana|type=mRNA|length=1709bp|location=Sequence derived from alignment at CM002460.1:727915..729623+ (Nannochloropsis gaditana)
CCTGCCGGGTGCGAAGCATGTAGCTTATCAGGCCGCACAGTGACCAGTTT
CTTCATCTTAGTATGGCCGTGTGTTTGAAGTGAGAGCGCGTCCATGGAAA
CGCGACTTTGGTTAAGCCTGGTGAGCATCGTCTTTTGACAGCACCATTTA
ACGACCACTTCTCCCTGGCATAGGCGACATCCATCCAATTGAACGCATAA
TTCGAAgatttctctccttctctccacgTGCGATAGGATAGAATGCCACA
AATGACTTGGGAAGAGACGCGGAGCATCATGTCCGAGGTCCAAGAGCTCT
TTGCAGGGCGTGAGGTAAGGTGGACTTCACCTACCGGGGCAAGGAAAATG
TGATAAAATAAAGATGCCCTAGATGCTCCCTCTcgcgctctctctctctt
aAACGATGTCCCCATAATTTTTCTTTCATTCAAAGGGGACTGGCTTGACA
ATCACTTGTTTTTCCGTGTCTCTTTGTCGTCATTCACTATGATGTGAAAA
TTATTGACGTATGTTCTAACTGCGCGATGTTCCAGGACACGAATACAATC
GAAGAGATCCGGGAATTGCAAAGAGAGATCAAGGAGACCGTACAGTCACG
TGAAGCTGGAGCTGCGACTTGCATCCGCGGTTTGACTGCAGAAGTCAACG
TTTCGCAAGCTGCAGTTGACGCTCTGCCGGCTGCGGAAGAGGCAGACAAA
TCCCGAAAAGCGGCattggaaggagagaaaggagagacggaggaagcacT
AGTTGCGATGAACAAAAAGATCGCAGATATGCGACAAAATGTTGAGTGTA
TGACAGTTGAGGcggaagaagtggaggagaaggcgaaaggaATTGAGCAT
GCCAGCCAAGACCAAGCGCCGCGTGTCTTGCACGCTCTAAGCCTGTACGC
CAACATCACTGGGATTCGATGGAAATACGACGACGGCGAGAAGAGTCACT
TGATCCGAGGATGTAAGtttcgaggaggaaacgcaGTGGGAGCGGAAACG
GAGAGGGTTTCGTGGATTGAGTGGTCGCCTTTTCACGATACTGAGGGGGC
GGGTCGCGCCTCTCCTGTGGCCCTCGTTTGCCGCCGGTTGATTTAAATGT
GTCGCGCTCCGATCTCTACTACCCTATGCCATACTCGTGTCGATATCGTA
TCACTTACATTAGCCTTTTCACGAGATTTCTAGGTTTTATTCTCCTGTTC
CAGCGCCGCCACTCATTTTACCACTCTCTCCATGCCCTTTCCAGTCGTCT
CTTTGcctgaaaaagaagaggtgCGGGAGTTCACCCTGGACTGTCACAAA
GAGAGCAGCTTCAAGATAGCCAATTCCATATGGAACATGATCGACCCCTG
ATCCTATTTGATGCCGCTTTCGAAGCccaagaggggaagagaataGGAGT
TATGCCGCAGTAGGTGATGTGCACGGCGTGCGAAGAACTAAACTGTCAAA
GCGTACGAATATGAGTCGGAAAAGTAAGCAACCGGCGTCGGATGCCGGTT
TCCTATCTGGTCAAGATTTCCGAAGAGATATGCCTAGCTGCTCGCTTTTT
GCGAGCAAATGAACTTTATGTGTCTTGTGCTCACGTTGGGGTTGAGATGT
GGCGGCCCTGCTAATCAAACAAGCGGGTTCAATACGTTGCAGTTAAGGCG
AATGTGACTGAGCGGCTGCATCGTTCTGTAAAAAAAACAAATTACACCTA
AGTTTCAGG back to topCoding sequence (CDS) from alignment at CM002460.1:727915..729623+ >rna3106 ID=rna3106|Name=rna3106|organism=Nannochloropsis gaditana|type=CDS|length=1818bp|location=Sequence derived from alignment at CM002460.1:727915..729623+ (Nannochloropsis gaditana)
ATGCCACAAATGACTTGGGAAGAGACGCGGAGCATCATGTCCGAGGTCCA
AGAGCTCTTTGCAGGGCGTGAGGACACGAATACAATCGAAGAGATCCGGG
AATTGCAAAGAGAGATCAAGGAGACCGTACAGTCACGTGAAGCTGGAGCT
GCGACTTGCATCCGCGGTTTGACTGCAGAAGTCAACGTTTCGCAAGCTGC
AGTTGACGCTCTGCCGGCTGCGGAAGAGGCAGACAAATCCCGAAAAGCGG
CattggaaggagagaaaggagagacggaggaagcacTAGTTGCGATGAAC
AAAAAGATCGCAGATATGCGACAAAATGTTGAGTGTATGACAGTTGAGGc
ggaagaagtggaggagaaggcgaaaggaATTGAGCATGCCAGCCAAGACC
AAGCGCCGCGTGTCTTGCACGCTCTAAGCCTGTACGCCAACATCACTGGG
ATTCGATGGAAATACGACGACGGCGAGAAGAGTCACTTGATCCGAGGATT
CGTCTCTTTGcctgaaaaagaagaggtgCGGGAGTTCACCCTGGACTGTC
ACAAAGAGAGCAGCTTCAAGATAGCCAATTCCATATGGAACATGATCGAC
CCCTGAATGCCACAAATGACTTGGGAAGAGACGCGGAGCATCATGTCCGA
GGTCCAAGAGCTCTTTGCAGGGCGTGAGGACACGAATACAATCGAAGAGA
TCCGGGAATTGCAAAGAGAGATCAAGGAGACCGTACAGTCACGTGAAGCT
GGAGCTGCGACTTGCATCCGCGGTTTGACTGCAGAAGTCAACGTTTCGCA
AGCTGCAGTTGACGCTCTGCCGGCTGCGGAAGAGGCAGACAAATCCCGAA
AAGCGGCattggaaggagagaaaggagagacggaggaagcacTAGTTGCG
ATGAACAAAAAGATCGCAGATATGCGACAAAATGTTGAGTGTATGACAGT
TGAGGcggaagaagtggaggagaaggcgaaaggaATTGAGCATGCCAGCC
AAGACCAAGCGCCGCGTGTCTTGCACGCTCTAAGCCTGTACGCCAACATC
ACTGGGATTCGATGGAAATACGACGACGGCGAGAAGAGTCACTTGATCCG
AGGATTCGTCTCTTTGcctgaaaaagaagaggtgCGGGAGTTCACCCTGG
ACTGTCACAAAGAGAGCAGCTTCAAGATAGCCAATTCCATATGGAACATG
ATCGACCCCTGAATGCCACAAATGACTTGGGAAGAGACGCGGAGCATCAT
GTCCGAGGTCCAAGAGCTCTTTGCAGGGCGTGAGGACACGAATACAATCG
AAGAGATCCGGGAATTGCAAAGAGAGATCAAGGAGACCGTACAGTCACGT
GAAGCTGGAGCTGCGACTTGCATCCGCGGTTTGACTGCAGAAGTCAACGT
TTCGCAAGCTGCAGTTGACGCTCTGCCGGCTGCGGAAGAGGCAGACAAAT
CCCGAAAAGCGGCattggaaggagagaaaggagagacggaggaagcacTA
GTTGCGATGAACAAAAAGATCGCAGATATGCGACAAAATGTTGAGTGTAT
GACAGTTGAGGcggaagaagtggaggagaaggcgaaaggaATTGAGCATG
CCAGCCAAGACCAAGCGCCGCGTGTCTTGCACGCTCTAAGCCTGTACGCC
AACATCACTGGGATTCGATGGAAATACGACGACGGCGAGAAGAGTCACTT
GATCCGAGGATTCGTCTCTTTGcctgaaaaagaagaggtgCGGGAGTTCA
CCCTGGACTGTCACAAAGAGAGCAGCTTCAAGATAGCCAATTCCATATGG
AACATGATCGACCCCTGA back to top
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