EWM27534.1, cds3098 (CDS) Nannochloropsis gaditana

Overview
NameEWM27534.1
Unique Namecds3098
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:728157..728228 +
Alignment locationCM002460.1:728450..728876 +
Alignment locationCM002460.1:729159..729265 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27534.1
ProductKinetochore-Ndc80 subunit Spc24
Orig transcript idgnl|cribi|Naga_100015g56.6350.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:728157..728228 +
CM002460.1supercontigCM002460.1:728450..728876 +
CM002460.1supercontigCM002460.1:729159..729265 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013252Ndc80_Spc24
Homology
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|585109801|gb|EWM27534.1| (Kinetochore-Ndc80 subunit Spc24 [Nannochloropsis gaditana])

HSP 1 Score: 411.764 bits (1057), Expect = 1.334e-145
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query:    1 MPQMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMIDP 201
            MPQMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMIDP
Sbjct:    1 MPQMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMIDP 201          
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|760439849|ref|XP_011396993.1| (hypothetical protein F751_1372 [Auxenochlorella protothecoides] >gi|675351667|gb|KFM24107.1| hypothetical protein F751_1372 [Auxenochlorella protothecoides])

HSP 1 Score: 80.1073 bits (196), Expect = 3.699e-15
Identity = 52/197 (26.40%), Postives = 106/197 (53.81%), Query Frame = 0
Query:    5 TWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDAL-PAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMID 200
             ++E   +++ +++ +A  +DT+TI E+  +Q E++  + SRE      I+ L++   V +A + A+ P  E A  +R   LE     +++ +  +  ++  + +  + +    +EV  K   ++H   +  PR+ H LSLYA+++ I W++D+ ++   I G VS PEK +VR F L   +   F+  N +W +++
Sbjct:    6 VFDEHLGVIAALRDNYARHDDTDTIRELLGIQEELEGLLSSREDTVKQAIQALSS--RVEEARIKAVYPEEEGAHDARLRELEARVAASKQHVAQLTTELEALGKQRQQLGSSMKEVGLKKAQVDHLLLEDEPRIRHQLSLYAHVSKISWRFDNPDR---IAGTVSDPEKADVRLFDL-APQMPRFEATNQLWRLME 196          
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|754346076|ref|XP_004364219.2| (hypothetical protein CAOG_03380 [Capsaspora owczarzaki ATCC 30864] >gi|765551781|gb|KJE92402.1| hypothetical protein CAOG_003380 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 78.1814 bits (191), Expect = 1.788e-14
Identity = 49/194 (25.26%), Postives = 103/194 (53.09%), Query Frame = 0
Query:    4 MTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQA-AVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIW 196
            +T++ T  +M E   +F   +D   + EI +LQR++ +  + RE  +   I  LTA+++  ++  V A P  + A+  +   +E +K    +++  +++    +   +  +  + + ++ + + +E A     P+    +SLY NIT I+W   D E+ +L++GFV+  +  +VR F+LD   ++ + IAN +W
Sbjct:    3 VTFQTTGELMREATRVFTQGDDVREVSEIMQLQRQVSDIHEQRELASKAAILELTAKLSAEESKCVRATPDNQHAEVLQN--IENDKFALAKSINHLDRDNQALTSTMHKLDGDLDAIQARRQAVEQARTVGVPQNKSIVSLYMNITNIKW---DFEQDNLVKGFVT--KNNDVRPFSLDPKVQTPYFIANYLW 189          
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|470384175|ref|XP_004334023.1| (hypothetical protein ACA1_321170 [Acanthamoeba castellanii str. Neff] >gi|440790736|gb|ELR12010.1| hypothetical protein ACA1_321170 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 74.3294 bits (181), Expect = 4.010e-13
Identity = 51/192 (26.56%), Postives = 97/192 (50.52%), Query Frame = 0
Query:    8 ETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMI 199
            E+  I++E+  +F   +D   I  I+E +  I+    +++A     I+ LT++V   +       + E+ + ++ AALE EK      L    + I  M + +  +++    ++ KA  I   + D+ PR  H LSLY +I+ I+W++D    S  I G V+L   ++VR F+ D  K     +A+ +W+++
Sbjct:    8 ESLLILTELTSIFTDEKDAQLICAIKEKESLIRARHDAKQAEMKNTIKALTSDVRKIEMKAQRKESKEQFN-AKIAALEKEKDLVTTNLGQYERNIKKMDEELSRLSLVETNMQAKASTISRETGDEVPRTKHLLSLYRSISNIQWRHD----SDFIEGHVTLV--DDVRPFSFDPTKHPKVVVADQLWDLL 192          
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|919058616|ref|XP_013411178.1| (PREDICTED: kinetochore protein Spc24-like [Lingula anatina] >gi|919058619|ref|XP_013411179.1| PREDICTED: kinetochore protein Spc24-like [Lingula anatina] >gi|919058622|ref|XP_013411180.1| PREDICTED: kinetochore protein Spc24-like [Lingula anatina])

HSP 1 Score: 74.3294 bits (181), Expect = 5.118e-13
Identity = 51/195 (26.15%), Postives = 106/195 (54.36%), Query Frame = 0
Query:    7 EETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSR-KAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMID 200
            EE RSI+SE+  +    E+   ++   E+  +I +  +++E      I  L+  ++  ++ V    + E  DK   + A + E+ +  ++ VA  +++A  + N+E M    E+VE K + ++H + +  P++ H ++LY +I+ IRW+YD       I+G+  L  K +V+ F+++  + S F I N +W++++
Sbjct:    5 EEARSIVSELITVLNQDEELTKLQAAGEIVDKINQLRRAQEEAIRNDIHALSTMIDEEESLVAGSQSDEALDKGMGELAAQMEQAQQHKSHVA--QELATTKGNIEQMKSLKEDVEAKKEQVKHKTTEALPKLRHDVNLYHSISNIRWQYDCEPDE--IKGY--LCNKHDVKPFSMNSKQNSQFFIVNYLWDLME 193          
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|545375594|ref|XP_005651962.1| (hypothetical protein COCSUDRAFT_64220 [Coccomyxa subellipsoidea C-169] >gi|384253944|gb|EIE27418.1| hypothetical protein COCSUDRAFT_64220 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 73.9442 bits (180), Expect = 7.927e-13
Identity = 50/198 (25.25%), Postives = 94/198 (47.47%), Query Frame = 0
Query:    3 QMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVD-ALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMI 199
            Q  + E  +++  ++  ++ R+D N +  I++L+ E+ E    RE      ++ L  E    +A ++ A P +  A   R   L   +  T  A+  +NK+   ++     +  +A EV+ +++ +E    +  PR  H LSLY +IT I W   +      I G V  P  +++R   +D   +S F + NSIW+ +
Sbjct:    6 QERFREHVNVVDALRANYSSRDDLNRVSAIQQLEAELSELCSRRETNVQAVVKELCRETEAVEAVLNEASPPSAHA--GRMKELLSARTSTHSAVEQLNKEKRFLQDQQTSLQQQATEVQLRSERVEELVTETEPRTRHELSLYVHITNISWHLQNNHNR--ISGKVHRPATKDIRHIDIDPSDKSQFDVVNSIWDTL 199          
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|971509765|dbj|GAQ88434.1| (hypothetical protein KFL_004280030 [Klebsormidium nitens])

HSP 1 Score: 72.4034 bits (176), Expect = 2.306e-12
Identity = 47/193 (24.35%), Postives = 104/193 (53.89%), Query Frame = 0
Query:    7 EETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMI 199
            EET ++M ++Q +F  RED + I +I++   E  + + SRE   A  +  +  ++  +++     P  E A + R  A++ E     + +  +   +  + Q  E +  + + +E K K +E  ++++ P+ L+ ++L+A+I+ I W +++ E+   ++G+++  E+ ++R F  D  K S F + N +W+ I
Sbjct:    7 EETLAVMGDLQRVFESREDADRIVKIQKKCEEAMQLIASRERHMADVLAEMKEQLREAESRATP-PEPESAHEERVDAIKEEARLAWQNIDRLQLDLQQLEQYREGLDEQFKSLEAKRKQLESLAKEEMPKTLYEITLFAHISSITWDFEEKER---VKGYITKIEEGDIRNFDFDTKKISQFDLTNQLWDWI 195          
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|1126176981|ref|XP_019620783.1| (PREDICTED: kinetochore protein spc24-like, partial [Branchiostoma belcheri])

HSP 1 Score: 73.1738 bits (178), Expect = 2.481e-12
Identity = 47/194 (24.23%), Postives = 98/194 (50.52%), Query Frame = 0
Query:    7 EETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMID 200
            +E   I+SE+  + A  E    +E + E+  +I +  + ++      I+ L A     +  V ++  +EE  + ++A LE EK + E+      + +  +   VE +  E   V  + + ++  + +  P V +  +LY+N+T ++W +  G     I+GFV+   K +V+ F+L+  + S F +AN +W+++D
Sbjct:   33 QEKMDIVSEMITMLAAGEQAEELERVTEVWAKINQLREEQQEDVKKTIQALLAVSEEEEQKVKSISQSEEGYQRKEAELEAEKSQAEKQRQQAEQGVQSLMGKVEKLKEEQAAVSRQKETVKQNTTEALPDVRYLATLYSNVTKLKWDFTGGPDD--IKGFVTC--KSDVKPFSLNSKQNSKFFVANYLWDLMD 222          
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|303290064|ref|XP_003064319.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226453917|gb|EEH51224.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 72.4034 bits (176), Expect = 2.820e-12
Identity = 55/194 (28.35%), Postives = 97/194 (50.00%), Query Frame = 0
Query:    8 ETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPA-AEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMID 200
            E   ++ E++ ++A  EDT    ++ E   E++E  + RE      I+ +  +V  ++ A  A P  +EE  K R A  E EK   EE L  M  +   +  +   +  EA +++ K + +     +  PR+ H LSLYA+I+ I W YD  ++   I+G V+     EV+ F     + + F++ N +W++ID
Sbjct:   16 ECHELIEEMRRIYATDEDTMKARQLNEQFAEVRELCERREVHMQDVIKEMVQKVKEAEKA--ATPTESEEEHKKRLAQAESEKRAAEEYLTHMEHEAMALENSQAELKAEAAKLKMKKQELTDMEDEGVPRLKHELSLYAHISKISWAYDRPDR---IKGRVN--GAGEVKPFDFAPDEMTEFELVNKMWDLID 202          
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|552826817|ref|XP_005847103.1| (hypothetical protein CHLNCDRAFT_52771 [Chlorella variabilis] >gi|307106756|gb|EFN55001.1| hypothetical protein CHLNCDRAFT_52771 [Chlorella variabilis])

HSP 1 Score: 72.4034 bits (176), Expect = 3.004e-12
Identity = 51/211 (24.17%), Postives = 97/211 (45.97%), Query Frame = 0
Query:    3 QMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMT--------------VEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMI 199
            Q  ++E   ++S +++ +A  ED + +  +   Q+E+      RE      I+ LT  V  ++               R+AA  GE+G  E+ + AM+    + R+NV+ +                +   +++KA  IE    +  PR  H LSLYA+++ I W+++  ++   + G VS P    +R F  D      F+I N++W+++
Sbjct:    6 QDVFDEHLGVISALRDNYARTEDASAVAGLVRAQQEVAAACSQREEQVKEAIKVLTGRVRTAE---------------REAAYPGEEGAHEQRVAAMSTVAHEARENVDSLNSQLQALQQQRQDIKAQVAALQQKADHIEQIVTEAEPRTRHQLSLYAHVSKITWQFEQRDR---VAGTVSSP----LRAFDFDPAATPDFEITNTLWDLM 194          
The following BLAST results are available for this feature:
BLAST of EWM27534.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109801|gb|EWM27534.1|1.334e-145100.00Kinetochore-Ndc80 subunit Spc24 [Nannochloropsis g... [more]
gi|760439849|ref|XP_011396993.1|3.699e-1526.40hypothetical protein F751_1372 [Auxenochlorella pr... [more]
gi|754346076|ref|XP_004364219.2|1.788e-1425.26hypothetical protein CAOG_03380 [Capsaspora owczar... [more]
gi|470384175|ref|XP_004334023.1|4.010e-1326.56hypothetical protein ACA1_321170 [Acanthamoeba cas... [more]
gi|919058616|ref|XP_013411178.1|5.118e-1326.15PREDICTED: kinetochore protein Spc24-like [Lingula... [more]
gi|545375594|ref|XP_005651962.1|7.927e-1325.25hypothetical protein COCSUDRAFT_64220 [Coccomyxa s... [more]
gi|971509765|dbj|GAQ88434.1|2.306e-1224.35hypothetical protein KFL_004280030 [Klebsormidium ... [more]
gi|1126176981|ref|XP_019620783.1|2.481e-1224.23PREDICTED: kinetochore protein spc24-like, partial... [more]
gi|303290064|ref|XP_003064319.1|2.820e-1228.35predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|552826817|ref|XP_005847103.1|3.004e-1224.17hypothetical protein CHLNCDRAFT_52771 [Chlorella v... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3106rna3106Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications