EWM27534.1, cds3098 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|585109801|gb|EWM27534.1| (Kinetochore-Ndc80 subunit Spc24 [Nannochloropsis gaditana]) HSP 1 Score: 411.764 bits (1057), Expect = 1.334e-145 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0 Query: 1 MPQMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMIDP 201 MPQMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMIDP Sbjct: 1 MPQMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMIDP 201
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|760439849|ref|XP_011396993.1| (hypothetical protein F751_1372 [Auxenochlorella protothecoides] >gi|675351667|gb|KFM24107.1| hypothetical protein F751_1372 [Auxenochlorella protothecoides]) HSP 1 Score: 80.1073 bits (196), Expect = 3.699e-15 Identity = 52/197 (26.40%), Postives = 106/197 (53.81%), Query Frame = 0 Query: 5 TWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDAL-PAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMID 200 ++E +++ +++ +A +DT+TI E+ +Q E++ + SRE I+ L++ V +A + A+ P E A +R LE +++ + + ++ + + + + +EV K ++H + PR+ H LSLYA+++ I W++D+ ++ I G VS PEK +VR F L + F+ N +W +++ Sbjct: 6 VFDEHLGVIAALRDNYARHDDTDTIRELLGIQEELEGLLSSREDTVKQAIQALSS--RVEEARIKAVYPEEEGAHDARLRELEARVAASKQHVAQLTTELEALGKQRQQLGSSMKEVGLKKAQVDHLLLEDEPRIRHQLSLYAHVSKISWRFDNPDR---IAGTVSDPEKADVRLFDL-APQMPRFEATNQLWRLME 196
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|754346076|ref|XP_004364219.2| (hypothetical protein CAOG_03380 [Capsaspora owczarzaki ATCC 30864] >gi|765551781|gb|KJE92402.1| hypothetical protein CAOG_003380 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 78.1814 bits (191), Expect = 1.788e-14 Identity = 49/194 (25.26%), Postives = 103/194 (53.09%), Query Frame = 0 Query: 4 MTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQA-AVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIW 196 +T++ T +M E +F +D + EI +LQR++ + + RE + I LTA+++ ++ V A P + A+ + +E +K +++ +++ + + + + + ++ + + +E A P+ +SLY NIT I+W D E+ +L++GFV+ + +VR F+LD ++ + IAN +W Sbjct: 3 VTFQTTGELMREATRVFTQGDDVREVSEIMQLQRQVSDIHEQRELASKAAILELTAKLSAEESKCVRATPDNQHAEVLQN--IENDKFALAKSINHLDRDNQALTSTMHKLDGDLDAIQARRQAVEQARTVGVPQNKSIVSLYMNITNIKW---DFEQDNLVKGFVT--KNNDVRPFSLDPKVQTPYFIANYLW 189
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|470384175|ref|XP_004334023.1| (hypothetical protein ACA1_321170 [Acanthamoeba castellanii str. Neff] >gi|440790736|gb|ELR12010.1| hypothetical protein ACA1_321170 [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 74.3294 bits (181), Expect = 4.010e-13 Identity = 51/192 (26.56%), Postives = 97/192 (50.52%), Query Frame = 0 Query: 8 ETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMI 199 E+ I++E+ +F +D I I+E + I+ +++A I+ LT++V + + E+ + ++ AALE EK L + I M + + +++ ++ KA I + D+ PR H LSLY +I+ I+W++D S I G V+L ++VR F+ D K +A+ +W+++ Sbjct: 8 ESLLILTELTSIFTDEKDAQLICAIKEKESLIRARHDAKQAEMKNTIKALTSDVRKIEMKAQRKESKEQFN-AKIAALEKEKDLVTTNLGQYERNIKKMDEELSRLSLVETNMQAKASTISRETGDEVPRTKHLLSLYRSISNIQWRHD----SDFIEGHVTLV--DDVRPFSFDPTKHPKVVVADQLWDLL 192
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|919058616|ref|XP_013411178.1| (PREDICTED: kinetochore protein Spc24-like [Lingula anatina] >gi|919058619|ref|XP_013411179.1| PREDICTED: kinetochore protein Spc24-like [Lingula anatina] >gi|919058622|ref|XP_013411180.1| PREDICTED: kinetochore protein Spc24-like [Lingula anatina]) HSP 1 Score: 74.3294 bits (181), Expect = 5.118e-13 Identity = 51/195 (26.15%), Postives = 106/195 (54.36%), Query Frame = 0 Query: 7 EETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSR-KAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMID 200 EE RSI+SE+ + E+ ++ E+ +I + +++E I L+ ++ ++ V + E DK + A + E+ + ++ VA +++A + N+E M E+VE K + ++H + + P++ H ++LY +I+ IRW+YD I+G+ L K +V+ F+++ + S F I N +W++++ Sbjct: 5 EEARSIVSELITVLNQDEELTKLQAAGEIVDKINQLRRAQEEAIRNDIHALSTMIDEEESLVAGSQSDEALDKGMGELAAQMEQAQQHKSHVA--QELATTKGNIEQMKSLKEDVEAKKEQVKHKTTEALPKLRHDVNLYHSISNIRWQYDCEPDE--IKGY--LCNKHDVKPFSMNSKQNSQFFIVNYLWDLME 193
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|545375594|ref|XP_005651962.1| (hypothetical protein COCSUDRAFT_64220 [Coccomyxa subellipsoidea C-169] >gi|384253944|gb|EIE27418.1| hypothetical protein COCSUDRAFT_64220 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 73.9442 bits (180), Expect = 7.927e-13 Identity = 50/198 (25.25%), Postives = 94/198 (47.47%), Query Frame = 0 Query: 3 QMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVD-ALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMI 199 Q + E +++ ++ ++ R+D N + I++L+ E+ E RE ++ L E +A ++ A P + A R L + T A+ +NK+ ++ + +A EV+ +++ +E + PR H LSLY +IT I W + I G V P +++R +D +S F + NSIW+ + Sbjct: 6 QERFREHVNVVDALRANYSSRDDLNRVSAIQQLEAELSELCSRRETNVQAVVKELCRETEAVEAVLNEASPPSAHA--GRMKELLSARTSTHSAVEQLNKEKRFLQDQQTSLQQQATEVQLRSERVEELVTETEPRTRHELSLYVHITNISWHLQNNHNR--ISGKVHRPATKDIRHIDIDPSDKSQFDVVNSIWDTL 199
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|971509765|dbj|GAQ88434.1| (hypothetical protein KFL_004280030 [Klebsormidium nitens]) HSP 1 Score: 72.4034 bits (176), Expect = 2.306e-12 Identity = 47/193 (24.35%), Postives = 104/193 (53.89%), Query Frame = 0 Query: 7 EETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMI 199 EET ++M ++Q +F RED + I +I++ E + + SRE A + + ++ +++ P E A + R A++ E + + + + + Q E + + + +E K K +E ++++ P+ L+ ++L+A+I+ I W +++ E+ ++G+++ E+ ++R F D K S F + N +W+ I Sbjct: 7 EETLAVMGDLQRVFESREDADRIVKIQKKCEEAMQLIASRERHMADVLAEMKEQLREAESRATP-PEPESAHEERVDAIKEEARLAWQNIDRLQLDLQQLEQYREGLDEQFKSLEAKRKQLESLAKEEMPKTLYEITLFAHISSITWDFEEKER---VKGYITKIEEGDIRNFDFDTKKISQFDLTNQLWDWI 195
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|1126176981|ref|XP_019620783.1| (PREDICTED: kinetochore protein spc24-like, partial [Branchiostoma belcheri]) HSP 1 Score: 73.1738 bits (178), Expect = 2.481e-12 Identity = 47/194 (24.23%), Postives = 98/194 (50.52%), Query Frame = 0 Query: 7 EETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMID 200 +E I+SE+ + A E +E + E+ +I + + ++ I+ L A + V ++ +EE + ++A LE EK + E+ + + + VE + E V + + ++ + + P V + +LY+N+T ++W + G I+GFV+ K +V+ F+L+ + S F +AN +W+++D Sbjct: 33 QEKMDIVSEMITMLAAGEQAEELERVTEVWAKINQLREEQQEDVKKTIQALLAVSEEEEQKVKSISQSEEGYQRKEAELEAEKSQAEKQRQQAEQGVQSLMGKVEKLKEEQAAVSRQKETVKQNTTEALPDVRYLATLYSNVTKLKWDFTGGPDD--IKGFVTC--KSDVKPFSLNSKQNSKFFVANYLWDLMD 222
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|303290064|ref|XP_003064319.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226453917|gb|EEH51224.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 72.4034 bits (176), Expect = 2.820e-12 Identity = 55/194 (28.35%), Postives = 97/194 (50.00%), Query Frame = 0 Query: 8 ETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPA-AEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMID 200 E ++ E++ ++A EDT ++ E E++E + RE I+ + +V ++ A A P +EE K R A E EK EE L M + + + + EA +++ K + + + PR+ H LSLYA+I+ I W YD ++ I+G V+ EV+ F + + F++ N +W++ID Sbjct: 16 ECHELIEEMRRIYATDEDTMKARQLNEQFAEVRELCERREVHMQDVIKEMVQKVKEAEKA--ATPTESEEEHKKRLAQAESEKRAAEEYLTHMEHEAMALENSQAELKAEAAKLKMKKQELTDMEDEGVPRLKHELSLYAHISKISWAYDRPDR---IKGRVN--GAGEVKPFDFAPDEMTEFELVNKMWDLID 202
BLAST of EWM27534.1 vs. NCBI_GenBank
Match: gi|552826817|ref|XP_005847103.1| (hypothetical protein CHLNCDRAFT_52771 [Chlorella variabilis] >gi|307106756|gb|EFN55001.1| hypothetical protein CHLNCDRAFT_52771 [Chlorella variabilis]) HSP 1 Score: 72.4034 bits (176), Expect = 3.004e-12 Identity = 51/211 (24.17%), Postives = 97/211 (45.97%), Query Frame = 0 Query: 3 QMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMT--------------VEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMI 199 Q ++E ++S +++ +A ED + + + Q+E+ RE I+ LT V ++ R+AA GE+G E+ + AM+ + R+NV+ + + +++KA IE + PR H LSLYA+++ I W+++ ++ + G VS P +R F D F+I N++W+++ Sbjct: 6 QDVFDEHLGVISALRDNYARTEDASAVAGLVRAQQEVAAACSQREEQVKEAIKVLTGRVRTAE---------------REAAYPGEEGAHEQRVAAMSTVAHEARENVDSLNSQLQALQQQRQDIKAQVAALQQKADHIEQIVTEAEPRTRHQLSLYAHVSKITWQFEQRDR---VAGTVSSP----LRAFDFDPAATPDFEITNTLWDLM 194 The following BLAST results are available for this feature:
BLAST of EWM27534.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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