rna3104, rna3104 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3104
Unique Name	rna3104
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2086
Alignment location	CM002460.1:723723..725703 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100015g58.6368.mrna
Orig protein id	gnl\|cribi\|Naga_100015g58.6368
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:723723..725703 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g58	gene2982	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3104	rna3104-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27552.1	cds3096	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:723723..725703+
coding sequence from alignment at CM002460.1:723723..725703+

mRNA sequence

>rna3104 ID=rna3104|Name=rna3104|organism=Nannochloropsis gaditana|type=mRNA|length=2086bp
TCGTGCCAGCGAGCAAATCACCTTGGAAGCCCAAAATTATGCTGCGAATA
AGGCTACTCATACATGAGACAAAGAATTTAATGGCAAATTGTTCCAAAAT
AATTTACATTTGACAATTATCTTCTCCCCTTCACACCACACCAGTCGAAC
AAGACCTTGGTCCTGATCTGGGACCCTCTCTTCCCTCTTGGATTTAAACT
TCTACATAGTTGCCGCGACCTGCATAATGCGATGCCTTTGGTTCGAAACA
ATGTTGGGTTTAGCTCTTGCACAGTCGACAGCAACGTCAAACCTCCGCCT
CCGAAGGAGCATCGTGGTAAAGGATTCCTTTCACCGAAGTTACTGTTCAA
AGGTGGAGTCAGCTACGAGTTTCTCGGGGCTCTCCTTGTCCAAGATCAGT
GCAGGCGTCGATCAACCAAAGAACGCTCCTCTTATTATGGAGACTTTAGG
CACAACCATTATAACAGTCACTGCTGGTCTACTTGGGAAAGCTGATATGT
CACCAGGATTGAAGGCTCTTGGCGTAGCGGCTGTTCTTATGCCTCTGATT
CATGCGGGAGCCCGAGTCAGCGGCGCGAACTACAACCCAAGCATTTCAGT
GGCTTTGCTTCTCCTTGGGAAGATGCCTCCCGCACAATGTCTTTTTTATA
TCAGCTGTCAGCTTGTTGGTGCTCTAATAGGAGGGGTTTTGACCAAAGTA
TTGCTCCCTCAAGGTGCCATGGACCCATCCTCGGTCGGAACCATAGCCAC
CTGTGTACCGGAAGCGCTCTTTTCCTTCGCCCTGATCCTAACCGCACTAC
AGACTACAGTATCAAAATCACAATCACGAAACAGTTTTTTTGGCTCCGCT
ATTTCTATTGTCGTATTTTTGGGTGTAGCATTTGGTGCAGGGATGAATCC
TGCTGTTGCAGGAGGTCTATTTGCTGGTGCCGGGCATCAGAAAGGCCTTC
TCGCTCGTACAATCCTTCCCTTGATTATGACATTTCCTGCTGCCTTCTTC
TTCCGGCTGACAGACATTGATGAAACTTATGCAAGGGAAATGGGACTCGT
TCCGTCCGTATCAGCAGCTTTTGTGCGGGCATACGGCCCGTACTTGATCG
AGTTGGTGGGAAGCTTTCTCCTGACAACAACCATAGGCTTGGCATTGGTC
ACAAAGAACCTTCCGATCCCATTGGCTGCTGGACTTGCCCTTACATTTTT
AGCCTTTGGATCCGGGTACGTGAGCGGCGCCCATCTCAACCCTGCCGTGA
GTCTGGGCGTGTATCTACGCAACGCAAGACGCATTAGGATGCAGAAGCTC
GCAGGCTATGCAAGTATCCAGGTTTTGGGCGCCCTTGCTTCCGGAGCAAT
GCTTCGGTATGTTGTGGGTGCTGGAGCTCTTGAAGGCAGGTATTCTGTTC
CTCGAGCGGTAATTTCCTGCGGACAGGCCTTTGCTGTCGAGGCACTCTTT
ACCTGTATGATGGTCTCTACCATCCTCCACATAAATGCGTCCACAGGATA
CCAAGGCAATCAGTGTAATGGGTTGGTCGTTGGGCTTGCACTAATGGGCG
GTCTTCTTATAACAGATGTGGTGGGGGGGGGTTGCTGAACCCTGCAGCGG
TACTTGGCCTATCTGTGAGCAACGTAGCATTTGAGAGGCACGCACGACGC
AGAGTGGCGGTTTTCATAGGAGCTCCTTTTGTGGGTGCGATTTTGGGAAA
CTTGACTGTCATGCTGACTTCGCCACCCGAAATAGGGAAGAAGTGAGAAA
AAGAGCATTCGAGAATCATGGTATCGTGGCAGGTCTAGCAGTGCATAAGG
GTAAATCGTCGAATGGTCGACGATAACGAAGGAAAGTTGGAGGATGTAAA
GTGCAAAGTAGATAAAATAGATGATGGAAAAGCTCAAAAATGACTATAAC
AGGTTGGGAAAGAGGATAAGCAAGAAAATGGAATGAAATTATAAGGGTTT
AAAGTGAAGAAGCACTGTATTACAACTGGAAATGCGAACAAAGGTACACG
AGACAGAAAAATATCAAAAGAGGATTCAGCACGTGGAGGAAAATGAAAAT
AGGAAATGAATTTCAAGAGATCTATGAAGGCATTGA

protein sequence of rna3104

>rna3104-protein ID=rna3104-protein|Name=rna3104|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MKRTSIILVAVTLVALPWATSASNVSDANPLAAGQKVCSKRQLKSFLGCA
YAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLS
KNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSL
FFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLL
ANKEATEDCPVVEGYFKKNGSPSVRILKAGAKLTYQE

mRNA from alignment at CM002460.1:723723..725703+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3104 ID=rna3104|Name=rna3104|organism=Nannochloropsis gaditana|type=mRNA|length=1981bp|location=Sequence derived from alignment at CM002460.1:723723..725703+ (Nannochloropsis gaditana)
CCTTTATGAGTCTTACATGAAACGACATAACGTGATCGCTATCGCTTACT
CCTTCTTCGCAATGTTAAGGACCTGAGGGAGTGTACACCAACTAGGTATA
GACCAGGACACTGGATACAGTAATGCCAGGGCGTTGGGAACTTGTGCGGA
GCAAAATTGCTCATTTCATTCGTTTATGTACCATCCTGAACAACGAGCAA
TCACTATAACTAATCCTGCCAAGACGACACCTTTTTCAAACAGTTCTCTT
ATTTGCCACAAGATCGTAACAAAAATATGAAAAGAACATCGATCATACTT
GTTGCAGTCACTCTAGTGGCTCTGCCTTGGGCCACCAGCGCTTCTAACGT
ATCTGATGCAAATCCTCTCGCGGCTGGCCAAAAAGTTTGCAGCAAAAGGC
AACTCAAGAGCTTTTTAGGGTGCGCTTATGCCGAGAAAGGTAGCGCAAGC
ATTTGGCCCAGTCTCTCGCCTTGTGAAGGGCAACTGGGAAAGTGTCGAGG
ATGGGCTTATGATGGACTTGACGCGCAAATTGTGACAAACGAGGACGAGC
CTTTCCTTGGAGTCGCAGGGCTTTCGAAAAACGCAAGGTACTTTGGCTAC
TATGCGTATGGTGATCTGGACCCCAAGAAATGTAAGTACGTGCTTTTAAA
TTTCCCATGCTATTTTCTCGAACGCGGCAGGAGAACTTACCTTATCTACC
CTTTCAAATCAGACGTGCCATTCAATTGCAATTACGTATCCAAGCTCTTC
CAAAAGGTACGTCGTGCAGAGACTCTGCATCATGTCCAATTTGAAGTGGC
ATGAGAATCTTCTTCGATTCTCATCTCAATCCTGGCTTTTGCAACTTTTT
AAATGAATCTCAGGTGGGGCGTTGTATTTTGGGTAAAACAACGACAGCAA
GCCAGGGTTCTTTGTTTTTTGAGAGAGTGGTGGTCGAATGCATTAGGTCT
GTTTTGGACCCTGCGGAGCAGTCGTTCGTCTTCACTCAGACCGATTATAC
TAGGAGTGCCCCGATGGAGCCTGGGCTTGTAACTTATTTCTACATAAGCC
CCTTCTTGTTGCTGGCTAATAAAGAAGCTACGGAAGATTGCCCAGTTGTT
GAGGGCTATTTCAAAAAAAATGGATCTCCATCTGTTCGTATTCTTAAAGC
TGGTGCGAAATTGACCTATCAGGAATAAAGCTATACACTTTGATTTAAAT
GCGCGGCCGAGGCATGTCCCGTATAGAGACAGAGACACATGCCATGAAGA
TGTCATTGACCGAACGATTGGAGGTCTGGCTTACTGCGTGGTATGTCTGT
GGTATGTGAGGAGCGGTAGTGGAAATTGTGGCGATTTAAATGACGAGTTG
TGTTGCTGAGgtgtcgggggggggagataTACAAGATGCAGCAGCTAATA
CTATCCATTCAGTGTTTTAATGATGACGGAGGGCCATGGTCGACCGTGCG
TTAAAATTTTGTATGGCTTTCATCCGCCATGATAGTGAAAGTGTGGCATG
ATTCCGGATCTAAACCGGACAATAAGTTAACCACGGAGCGTTTTTTGAAT
TCAACTGTCGCGTGGAAGAGGATTGGCTTAGCAGCAAGGGAACGAGAAAA
TGAAATTATGGAGGATAAGAACacaaaaaaaggaaagtaaggaagaaaat
gtttACATGGCGTGAAAGCTTTTGTGCGCTTACTCTTTTCAATTCCATCT
CACGAGAGGTCGATGCCGCATTAAAACTAAAAGGAGAAAAGTGAGAAATA
CGCTAACGCTGCGTGTCAGATGGTGTTTTGGTCAAATTCATCTCTTCTGA
AAACTAACCTCCCCTTCTACGCAGAACAAAGTGACTACCCGGAGGACAAC
GAATCATCGAGATCGTGGACCCTTCATTCGCAAATTGACTGACAAATCTG
TAATGATACTTTGCTTGCACACGTACATACCATGCACAGGGCCTCTGCTG
ACCTGAGGAACCCGGTGTATATTTGGAGCGG

Coding sequence (CDS) from alignment at CM002460.1:723723..725703+

>rna3104 ID=rna3104|Name=rna3104|organism=Nannochloropsis gaditana|type=CDS|length=2142bp|location=Sequence derived from alignment at CM002460.1:723723..725703+ (Nannochloropsis gaditana)
ATGAAAAGAACATCGATCATACTTGTTGCAGTCACTCTAGTGGCTCTGCC
TTGGGCCACCAGCGCTTCTAACGTATCTGATGCAAATCCTCTCGCGGCTG
GCCAAAAAGTTTGCAGCAAAAGGCAACTCAAGAGCTTTTTAGGGTGCGCT
TATGCCGAGAAAGGTAGCGCAAGCATTTGGCCCAGTCTCTCGCCTTGTGA
AGGGCAACTGGGAAAGTGTCGAGGATGGGCTTATGATGGACTTGACGCGC
AAATTGTGACAAACGAGGACGAGCCTTTCCTTGGAGTCGCAGGGCTTTCG
AAAAACGCAAGGTACTTTGGCTACTATGCGTATGGTGATCTGGACCCCAA
GAAATACGTGCCATTCAATTGCAATTACGTATCCAAGCTCTTCCAAAAGG
TGGGGCGTTGTATTTTGGGTAAAACAACGACAGCAAGCCAGGGTTCTTTG
TTTTTTGAGAGAGTGGTGGTCGAATGCATTAGGTCTGTTTTGGACCCTGC
GGAGCAGTCGTTCGTCTTCACTCAGACCGATTATACTAGGAGTGCCCCGA
TGGAGCCTGGGCTTGTAACTTATTTCTACATAAGCCCCTTCTTGTTGCTG
GCTAATAAAGAAGCTACGGAAGATTGCCCAGTTGTTGAGGGCTATTTCAA
AAAAAATGGATCTCCATCTGTTCGTATTCTTAAAGCTGGTGCGAAATTGA
CCTATCAGGAATAAATGAAAAGAACATCGATCATACTTGTTGCAGTCACT
CTAGTGGCTCTGCCTTGGGCCACCAGCGCTTCTAACGTATCTGATGCAAA
TCCTCTCGCGGCTGGCCAAAAAGTTTGCAGCAAAAGGCAACTCAAGAGCT
TTTTAGGGTGCGCTTATGCCGAGAAAGGTAGCGCAAGCATTTGGCCCAGT
CTCTCGCCTTGTGAAGGGCAACTGGGAAAGTGTCGAGGATGGGCTTATGA
TGGACTTGACGCGCAAATTGTGACAAACGAGGACGAGCCTTTCCTTGGAG
TCGCAGGGCTTTCGAAAAACGCAAGGTACTTTGGCTACTATGCGTATGGT
GATCTGGACCCCAAGAAATACGTGCCATTCAATTGCAATTACGTATCCAA
GCTCTTCCAAAAGGTGGGGCGTTGTATTTTGGGTAAAACAACGACAGCAA
GCCAGGGTTCTTTGTTTTTTGAGAGAGTGGTGGTCGAATGCATTAGGTCT
GTTTTGGACCCTGCGGAGCAGTCGTTCGTCTTCACTCAGACCGATTATAC
TAGGAGTGCCCCGATGGAGCCTGGGCTTGTAACTTATTTCTACATAAGCC
CCTTCTTGTTGCTGGCTAATAAAGAAGCTACGGAAGATTGCCCAGTTGTT
GAGGGCTATTTCAAAAAAAATGGATCTCCATCTGTTCGTATTCTTAAAGC
TGGTGCGAAATTGACCTATCAGGAATAAATGAAAAGAACATCGATCATAC
TTGTTGCAGTCACTCTAGTGGCTCTGCCTTGGGCCACCAGCGCTTCTAAC
GTATCTGATGCAAATCCTCTCGCGGCTGGCCAAAAAGTTTGCAGCAAAAG
GCAACTCAAGAGCTTTTTAGGGTGCGCTTATGCCGAGAAAGGTAGCGCAA
GCATTTGGCCCAGTCTCTCGCCTTGTGAAGGGCAACTGGGAAAGTGTCGA
GGATGGGCTTATGATGGACTTGACGCGCAAATTGTGACAAACGAGGACGA
GCCTTTCCTTGGAGTCGCAGGGCTTTCGAAAAACGCAAGGTACTTTGGCT
ACTATGCGTATGGTGATCTGGACCCCAAGAAATACGTGCCATTCAATTGC
AATTACGTATCCAAGCTCTTCCAAAAGGTGGGGCGTTGTATTTTGGGTAA
AACAACGACAGCAAGCCAGGGTTCTTTGTTTTTTGAGAGAGTGGTGGTCG
AATGCATTAGGTCTGTTTTGGACCCTGCGGAGCAGTCGTTCGTCTTCACT
CAGACCGATTATACTAGGAGTGCCCCGATGGAGCCTGGGCTTGTAACTTA
TTTCTACATAAGCCCCTTCTTGTTGCTGGCTAATAAAGAAGCTACGGAAG
ATTGCCCAGTTGTTGAGGGCTATTTCAAAAAAAATGGATCTCCATCTGTT
CGTATTCTTAAAGCTGGTGCGAAATTGACCTATCAGGAATAA

Synonyms

Publications