EWM27552.1, cds3096 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM27552.1 vs. NCBI_GenBank
Match: gi|585109819|gb|EWM27552.1| (hypothetical protein Naga_100015g58 [Nannochloropsis gaditana]) HSP 1 Score: 488.034 bits (1255), Expect = 1.841e-174 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query: 1 MKRTSIILVAVTLVALPWATSASNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFKKNGSPSVRILKAGAKLTYQE 237
MKRTSIILVAVTLVALPWATSASNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFKKNGSPSVRILKAGAKLTYQE
Sbjct: 1 MKRTSIILVAVTLVALPWATSASNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFKKNGSPSVRILKAGAKLTYQE 237
BLAST of EWM27552.1 vs. NCBI_GenBank
Match: gi|585101277|gb|EWM21193.1| (hypothetical protein Naga_100474g4 [Nannochloropsis gaditana]) HSP 1 Score: 247.669 bits (631), Expect = 1.430e-79 Identity = 119/222 (53.60%), Postives = 159/222 (71.62%), Query Frame = 0
Query: 13 LVALPWATSA---SNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFKKNGSPSVRILKAGA 231
L +P A SA S+V N L ++VC RQ K+FL CA+AEKG+AS WP LS C+ LG CRGWAYDG++ +T E +LG+AG+SKNARYFGYYAYG+ DPKKYVPF+CNYVS+L++KVGRCILG++T G++ F +V +C+ L AE +FVF+QT++ P+ G+V YFY++PFL L++ E+CP++EG+FKK GSP VR K GA
Sbjct: 16 LGTMPQAFSAFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKVGRCILGQSTVV--GTIDFTDLVTDCVEITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMAPFLRLSDDINYENCPILEGHFKK-GSPIVRASKGGA 234
BLAST of EWM27552.1 vs. NCBI_GenBank
Match: gi|585113117|gb|EWM30454.1| (hypothetical protein Naga_100100g12 [Nannochloropsis gaditana]) HSP 1 Score: 230.72 bits (587), Expect = 6.785e-73 Identity = 114/217 (52.53%), Postives = 147/217 (67.74%), Query Frame = 0
Query: 9 VAVTLVALPWATSA--------SNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFK 217
VAVTL A SA SNV+++N LAAGQK+C R LK+FL CAY +KG ++ WP LS CE LG CRGW Y G++ + +L AG+S+ A + GYYAYGD DPKKY F+CNYVSKL+Q VG C+LG+TT QGSL FE VV ECI S L P + +F++ QT++ RSAP++ G +TYFYI P LL+ + ++E CPV+EGY K
Sbjct: 3 VAVTLFATAIVLSAPVSRAFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRS--YLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTV--QGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLK 215
BLAST of EWM27552.1 vs. NCBI_GenBank
Match: gi|553188521|ref|XP_005854813.1| (hypothetical protein NGA_0414800 [Nannochloropsis gaditana CCMP526] >gi|422294249|gb|EKU21549.1| hypothetical protein NGA_0414800 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 208.764 bits (530), Expect = 3.401e-64 Identity = 111/237 (46.84%), Postives = 145/237 (61.18%), Query Frame = 0
Query: 1 MKRTSIILVAVTLV---ALPWATSA---SNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFKKNGSPSVRILKAGA 231
MK L A L+ +P A SA S+V N L ++VC RQ K+FL CA+AEKG+AS WP LS C+ LG CRGWAYDG++ +T E +LG+AG+SKNARYFGYYAYG+ DPKKYVPF+CNYVS+L++K+ L AE +FVF+QT++ P+ G+V YFY+ PFL L++ E+CP++EG+FKK GSP VR K GA
Sbjct: 1 MKTAFFGLPAAALLFLGTMPQAFSAFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKI----------------------------TLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMVPFLRLSDDINYENCPILEGHFKK-GSPIVRASKGGA 208 The following BLAST results are available for this feature:
BLAST of EWM27552.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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