EWM27552.1, cds3096 (CDS) Nannochloropsis gaditana

Overview
NameEWM27552.1
Unique Namecds3096
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:723999..724353 +
Alignment locationCM002460.1:724435..724478 +
Alignment locationCM002460.1:724586..724900 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27552.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100015g58.6368.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:723999..724353 +
CM002460.1supercontigCM002460.1:724435..724478 +
CM002460.1supercontigCM002460.1:724586..724900 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27552.1 vs. NCBI_GenBank
Match: gi|585109819|gb|EWM27552.1| (hypothetical protein Naga_100015g58 [Nannochloropsis gaditana])

HSP 1 Score: 488.034 bits (1255), Expect = 1.841e-174
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MKRTSIILVAVTLVALPWATSASNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFKKNGSPSVRILKAGAKLTYQE 237
            MKRTSIILVAVTLVALPWATSASNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFKKNGSPSVRILKAGAKLTYQE
Sbjct:    1 MKRTSIILVAVTLVALPWATSASNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFKKNGSPSVRILKAGAKLTYQE 237          
BLAST of EWM27552.1 vs. NCBI_GenBank
Match: gi|585101277|gb|EWM21193.1| (hypothetical protein Naga_100474g4 [Nannochloropsis gaditana])

HSP 1 Score: 247.669 bits (631), Expect = 1.430e-79
Identity = 119/222 (53.60%), Postives = 159/222 (71.62%), Query Frame = 0
Query:   13 LVALPWATSA---SNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFKKNGSPSVRILKAGA 231
            L  +P A SA   S+V   N L   ++VC  RQ K+FL CA+AEKG+AS WP LS C+  LG CRGWAYDG++   +T   E +LG+AG+SKNARYFGYYAYG+ DPKKYVPF+CNYVS+L++KVGRCILG++T    G++ F  +V +C+   L  AE +FVF+QT++    P+  G+V YFY++PFL L++    E+CP++EG+FKK GSP VR  K GA
Sbjct:   16 LGTMPQAFSAFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKVGRCILGQSTVV--GTIDFTDLVTDCVEITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMAPFLRLSDDINYENCPILEGHFKK-GSPIVRASKGGA 234          
BLAST of EWM27552.1 vs. NCBI_GenBank
Match: gi|585113117|gb|EWM30454.1| (hypothetical protein Naga_100100g12 [Nannochloropsis gaditana])

HSP 1 Score: 230.72 bits (587), Expect = 6.785e-73
Identity = 114/217 (52.53%), Postives = 147/217 (67.74%), Query Frame = 0
Query:    9 VAVTLVALPWATSA--------SNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFK 217
            VAVTL A     SA        SNV+++N LAAGQK+C  R LK+FL CAY +KG ++ WP LS CE  LG CRGW Y G++   +      +L  AG+S+ A + GYYAYGD DPKKY  F+CNYVSKL+Q VG C+LG+TT   QGSL FE VV ECI S L P + +F++ QT++ RSAP++ G +TYFYI P LL+ +  ++E CPV+EGY K
Sbjct:    3 VAVTLFATAIVLSAPVSRAFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRS--YLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTV--QGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLK 215          
BLAST of EWM27552.1 vs. NCBI_GenBank
Match: gi|553188521|ref|XP_005854813.1| (hypothetical protein NGA_0414800 [Nannochloropsis gaditana CCMP526] >gi|422294249|gb|EKU21549.1| hypothetical protein NGA_0414800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 208.764 bits (530), Expect = 3.401e-64
Identity = 111/237 (46.84%), Postives = 145/237 (61.18%), Query Frame = 0
Query:    1 MKRTSIILVAVTLV---ALPWATSA---SNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFKKNGSPSVRILKAGA 231
            MK     L A  L+    +P A SA   S+V   N L   ++VC  RQ K+FL CA+AEKG+AS WP LS C+  LG CRGWAYDG++   +T   E +LG+AG+SKNARYFGYYAYG+ DPKKYVPF+CNYVS+L++K+                             L  AE +FVF+QT++    P+  G+V YFY+ PFL L++    E+CP++EG+FKK GSP VR  K GA
Sbjct:    1 MKTAFFGLPAAALLFLGTMPQAFSAFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKI----------------------------TLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMVPFLRLSDDINYENCPILEGHFKK-GSPIVRASKGGA 208          
The following BLAST results are available for this feature:
BLAST of EWM27552.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109819|gb|EWM27552.1|1.841e-174100.00hypothetical protein Naga_100015g58 [Nannochlorops... [more]
gi|585101277|gb|EWM21193.1|1.430e-7953.60hypothetical protein Naga_100474g4 [Nannochloropsi... [more]
gi|585113117|gb|EWM30454.1|6.785e-7352.53hypothetical protein Naga_100100g12 [Nannochlorops... [more]
gi|553188521|ref|XP_005854813.1|3.401e-6446.84hypothetical protein NGA_0414800 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3104rna3104Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications