rna3097, rna3097 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3097
Unique Name	rna3097
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1511
Alignment location	CM002460.1:705404..707380 -

Link to JBrowse

Properties


Property Name	Value
Product	radical sam domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100015g66.6380.mrna
Orig protein id	gnl\|cribi\|Naga_100015g66.6380
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:705404..707380 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g66	gene2975	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3097	rna3097-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27564.1	cds3089	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:705404..707380-
coding sequence from alignment at CM002460.1:705404..707380-

mRNA sequence

>rna3097 ID=rna3097|Name=rna3097|organism=Nannochloropsis gaditana|type=mRNA|length=1511bp
TGACGAGACGACACGCACGTCTAGTGGATGCCAGACACGTGGCAGCGACA
CGGGTCTCGCATACCACGCCCTCTTACAGAATAATATCTCCGATCCTGAA
ATGTTGTGCGCGGGCCACACATCCGCACGATAGCTGGGATTTTCACAAGG
ATTCGCGACCACATGGTGCGGAGGCGTGACTCCGGATTTTCCCCCAAGCC
CTACCGATGTAATTCGCGGGCCGCAACCCTGCCAAATCCACGGCACAAAC
CCTCCAAAAGGTTGAAAAAAAGCCAGAACCACATGATTTTATGAAGACAA
TACCCTATTGTCAATCAAGCAACGGGGCCTTGGTTGAGAGGCGGACATTG
GTCATATTGAACCCCGAGTGCCACGACTCGACCCGAATATCTCTCCTTTG
CGTCGTGTCGCCTAAAGCGGCTTGGCCGCCCTACCTCAACTGTGTTCTGA
TTCCCCAGAATGTGCCCTGCTTAACCCCTGTCCATGTGGATGTATGTCAA
TAAAAAAACAGGAAAACTTATGCACGACCATGAAAGCGGGAGTTCTCGTT
GGTGTATCTCTTCTTTTGAATGCGGCATGCGTCACACGCGCCTTCCTTAC
TTCGTATCACCCGAACGGTGTTCTCCGTAGCCGCCCCCTCCCTTGCATTA
CGGCTTCAAGTAAATTCCATCCACGACTTTTGAGTCGCCTAAGTGCCTAT
ATAGAGGATGACGGGGACGATCTCACGGACCGCTCTGTATCGCTGCTTAC
TCAAGTGGCCAAAGCCTTGAGCAAGGAGGTTCCAGTGCCCTCCTTCCTAG
TGCCCCCCCGTGCCGGCGACGTGGGCCGGGTCACTTCCTCAGTTTCATCC
TCCACGACAACAATTATGGGCTGGTTTCCTCTGTCCATGGGTGTAGCCCT
TACTCTTGGCAACCCCGTGTATCCTGCGGCCTTTTTGGGGTTTCTCTATC
TGTCTCGCCCCACGGAGGCACCCGATGTGGCAGCTGCCGTGGCGGCCGTG
CTGGTGGCGGGGGTAGTGAACCCTTTATTGGTATCTTTCACCGAGGCTAC
GGGGCTGGATGATACATTTCTGGCCCGCTTCCCCTTTTTCCTTGGAGCTG
CCACCAGCGCCTACGTCCTGGCCCAGGTCTTGACCGAGGGGAAGGAGGTG
TTTCAGGATGCGCCGCGACGGGCGGAGAAAGAGCGTGTTCCCGGGCTCAA
GCAGGAGAGAGATCTGAGGTTCTTCGACGTCAAGATGAAGAACAAAAATG
GGACAGAAGGGGAAGAAGCCAATTTGACGGTTGAAGTGCAAGAAAAACCG
GGGCAAAGCGAGGTGTAGGGCAGCCCCGGTCATGGTAGACAGCAAAGACA
TGTAAGGCCCGAGGATGTTAGTGTACATGAAAGAAATTCACCACCTACTC
AAAATGATGTGCCCTTGTACATATTTTTTTGTCCCCCTCTCGTCCTGGAC
GGCGGCCGCCTATCTCTTGGAGCCGTGCCGCTCTTGCACCACCCACACAG
TCAGGCCCACG

protein sequence of rna3097

>rna3097-protein ID=rna3097-protein|Name=rna3097|organism=Nannochloropsis gaditana|type=polypeptide|length=416bp
MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEA
DGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQD
GQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILE
QLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVT
ISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLL
AVCLEHTRVSKKPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPY
NPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLA
LTQPGKGESAGPKGAPAVNDIEDLMDGGGRRGAKKGERPWGKNRGGGGAA
GRKVARAALGGGQAAA

mRNA from alignment at CM002460.1:705404..707380-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3097 ID=rna3097|Name=rna3097|organism=Nannochloropsis gaditana|type=mRNA|length=1977bp|location=Sequence derived from alignment at CM002460.1:705404..707380- (Nannochloropsis gaditana)
GCTCAATCAGTACATTTGAAAAGAGAGGAACAAGCAACCGCGCTTAGCTA
TTTGAATCCTAGATCTTCTTCTTATTTTTCATTTCTCAGCCCAAGGTGCG
CGTATTTCTCCATTTTACCGTCAAGAAGGAGTCACAGGCTTCAAGTCGGC
TCAATCGCAACCTCCTCCCTGCCACTGCTTGGCTGCCTGCTTCCATAACA
GGACTCTTTTCTCGACGTACGGACTGAACCATGGTGAAAGCCCGGAAACT
ATCACCGTTACCTGTTTTCGATGAGGCCTCCGTGCGAACTTTTTTGGAGG
AGAGGGGAATCAAGCAATTGCACGCCCGGCAGCTATGGAAGGTGATCATC
AAAAATCGGCCCAAAACTTTGCAAGAGGCGGACGGCCTGGCAAAGCTAGA
GATGGGCAAGCAACTACCCACAGGAATGGTTGCAGAGCTTGCAGAGCATT
TTGTTTTGACGACGTCCCGAGTCGTAGAGAAGCACGTGTCAGGGGACGGT
ACCGTCAAGTTGCTGGTGGAGCTTCAAGACGGCCAACGCGTGGAAGCTGT
CATTATACGCCACGAAGGGCGTAACACCTTGTGCGTGTCCAGCCAAATTG
GTTGCCAGATGGGCTGTTCTTTTTGTGCAACGGGAACGATGGGTATCAAG
GGCAACCTTCTCGGCGGAGAGATCTTGGAGCAGCTCTACCATGCATCTGG
GGTGGCATCCATTCGTAATGTAAGAAACGCAAAAATGATGACGAGTCCAG
ATTATTGGCAGCGTGCAAGCCGTTAGGCCTTCCGTTTTGCATGCTTAAGC
TCTCAAGAGGACCGTGTGGCGTGCACGGGATCTTTGTACAGGGCAAAGGA
TGTATTGGTGCATCGACTTGACCGCATTCCGCCCGTGACAATACTTTCTT
TTTTCCTCCTGCTTTTAGATCGTCTTCATGGGGATGGGGGAGCCCCTGCA
GAACTATGACGCTGTCATGGACGCAGTCCGCGGGATGACTGACGTCAAGC
GCTTCCGTCTGAGCCACCACCAGGTCACCATCTCCACGGTCGGGATCGTC
CATGCCATCAAGCGGATGACCGCAGACTTCCCGCAGCTGAATTTGGCCCT
CTCGCTGCACGCTCCCTCTCAAGCCCTGCGCCAACAGATCGTCCCTTCGG
CCAAGGCCTTCCCCATCGAGAAGCTCCTGGCGGTCTGCCTCGAGCACACC
CGGGTCAGCAAGAAACCGCTCTTCGTCGAATACGTCCTCCTCAAAGGAGT
CAACGACCGGCCCGAGCACGCCCGAGAGCTGGGCCAGCTCCTGGTGGGAG
CCTCTGTGATCGTGAACCTGATCCCGTACAACCCCACAGACGTAGCCATG
GACTTCGAGACGCCTGAGGACGACGACGTGGACACCTTCTACACGGTGCT
GGCCCATGACTACAAGCTCCTGACCACGGTTCGGGTCCACCACGGACGGG
AGATCGGTGGGGCGTGTGGACAGCTGGCATTGACCCAGCCAGGCAAGGGG
GAAAGCGCGGGCCCTAAAGGGGCGCCTGCGGTGAACGACATCGAAGATCT
CATGGACGGGGGGGGGAGGCGGGGCGCGAAGAAAGGGGAAAGGCCCTGGG
GGAAGAACCGAGGGGGCGGGGGGGCGGCGGGCCGCAAAGTAGCGCGTGCT
GCGCTAGGGGGGGGGCAAGCTGCCGCATGAGAAGGGTGCGATAGGCGGCA
TGCCCTCCCAGGTAGGCAAGGGGCAGGACAGCAGGGACAGAGAGGGGAAG
GCGGAAGACCAGGATGGCCGAGGCGTGAGCCGGAGGGGCATGCCCGCCCA
TGTCTCCTGCGGACGGGCCACGTGGATCCTGTCCTTGGCGGGCGCGTGCG
TGGCCATGGCGGCCGGTCTGGTGCTGCTCCGCGTGGGCCTGACTGTGTGG
GTGGTGCAAGAGCGGCACGGCTCCAAGAGATAGGCGGCCGCCGTCCAGGA
CGAGAGGGGGACAAAAAAATATGTACA

Coding sequence (CDS) from alignment at CM002460.1:705404..707380-

>rna3097 ID=rna3097|Name=rna3097|organism=Nannochloropsis gaditana|type=CDS|length=2502bp|location=Sequence derived from alignment at CM002460.1:705404..707380- (Nannochloropsis gaditana)
ATCGTCTTCATGGGGATGGGGGAGCCCCTGCAGAACTATGACGCTGTCAT
GGACGCAGTCCGCGGGATGACTGACGTCAAGCGCTTCCGTCTGAGCCACC
ACCAGGTCACCATCTCCACGGTCGGGATCGTCCATGCCATCAAGCGGATG
ACCGCAGACTTCCCGCAGCTGAATTTGGCCCTCTCGCTGCACGCTCCCTC
TCAAGCCCTGCGCCAACAGATCGTCCCTTCGGCCAAGGCCTTCCCCATCG
AGAAGCTCCTGGCGGTCTGCCTCGAGCACACCCGGGTCAGCAAGAAACCG
CTCTTCGTCGAATACGTCCTCCTCAAAGGAGTCAACGACCGGCCCGAGCA
CGCCCGAGAGCTGGGCCAGCTCCTGGTGGGAGCCTCTGTGATCGTGAACC
TGATCCCGTACAACCCCACAGACGTAGCCATGGACTTCGAGACGCCTGAG
GACGACGACGTGGACACCTTCTACACGGTGCTGGCCCATGACTACAAGCT
CCTGACCACGGTTCGGGTCCACCACGGACGGGAGATCGGTGGGGCGTGTG
GACAGCTGGCATTGACCCAGCCAGGCAAGGGGGAAAGCGCGGGCCCTAAA
GGGGCGCCTGCGGTGAACGACATCGAAGATCTCATGGACGGGGGGGGGAG
GCGGGGCGCGAAGAAAGGGGAAAGGCCCTGGGGGAAGAACCGAGGGGGCG
GGGGGGCGGCGGGCCGCAAAGTAGCGCGTGCTGCGCTAGGGGGGGGGCAA
GCTGCCGCATGAATGGTGAAAGCCCGGAAACTATCACCGTTACCTGTTTT
CGATGAGGCCTCCGTGCGAACTTTTTTGGAGGAGAGGGGAATCAAGCAAT
TGCACGCCCGGCAGCTATGGAAGGTGATCATCAAAAATCGGCCCAAAACT
TTGCAAGAGGCGGACGGCCTGGCAAAGCTAGAGATGGGCAAGCAACTACC
CACAGGAATGGTTGCAGAGCTTGCAGAGCATTTTGTTTTGACGACGTCCC
GAGTCGTAGAGAAGCACGTGTCAGGGGACGGTACCGTCAAGTTGCTGGTG
GAGCTTCAAGACGGCCAACGCGTGGAAGCTGTCATTATACGCCACGAAGG
GCGTAACACCTTGTGCGTGTCCAGCCAAATTGGTTGCCAGATGGGCTGTT
CTTTTTGTGCAACGGGAACGATGGGTATCAAGGGCAACCTTCTCGGCGGA
GAGATCTTGGAGCAGCTCTACCATGCATCTGGGGTGGCATCCATTCGTAA
TATCGTCTTCATGGGGATGGGGGAGCCCCTGCAGAACTATGACGCTGTCA
TGGACGCAGTCCGCGGGATGACTGACGTCAAGCGCTTCCGTCTGAGCCAC
CACCAGGTCACCATCTCCACGGTCGGGATCGTCCATGCCATCAAGCGGAT
GACCGCAGACTTCCCGCAGCTGAATTTGGCCCTCTCGCTGCACGCTCCCT
CTCAAGCCCTGCGCCAACAGATCGTCCCTTCGGCCAAGGCCTTCCCCATC
GAGAAGCTCCTGGCGGTCTGCCTCGAGCACACCCGGGTCAGCAAGAAACC
GCTCTTCGTCGAATACGTCCTCCTCAAAGGAGTCAACGACCGGCCCGAGC
ACGCCCGAGAGCTGGGCCAGCTCCTGGTGGGAGCCTCTGTGATCGTGAAC
CTGATCCCGTACAACCCCACAGACGTAGCCATGGACTTCGAGACGCCTGA
GGACGACGACGTGGACACCTTCTACACGGTGCTGGCCCATGACTACAAGC
TCCTGACCACGGTTCGGGTCCACCACGGACGGGAGATCGGTGGGGCGTGT
GGACAGCTGGCATTGACCCAGCCAGGCAAGGGGGAAAGCGCGGGCCCTAA
AGGGGCGCCTGCGGTGAACGACATCGAAGATCTCATGGACGGGGGGGGGA
GGCGGGGCGCGAAGAAAGGGGAAAGGCCCTGGGGGAAGAACCGAGGGGGC
GGGGGGGCGGCGGGCCGCAAAGTAGCGCGTGCTGCGCTAGGGGGGGGGCA
AGCTGCCGCATGAATGGTGAAAGCCCGGAAACTATCACCGTTACCTGTTT
TCGATGAGGCCTCCGTGCGAACTTTTTTGGAGGAGAGGGGAATCAAGCAA
TTGCACGCCCGGCAGCTATGGAAGGTGATCATCAAAAATCGGCCCAAAAC
TTTGCAAGAGGCGGACGGCCTGGCAAAGCTAGAGATGGGCAAGCAACTAC
CCACAGGAATGGTTGCAGAGCTTGCAGAGCATTTTGTTTTGACGACGTCC
CGAGTCGTAGAGAAGCACGTGTCAGGGGACGGTACCGTCAAGTTGCTGGT
GGAGCTTCAAGACGGCCAACGCGTGGAAGCTGTCATTATACGCCACGAAG
GGCGTAACACCTTGTGCGTGTCCAGCCAAATTGGTTGCCAGATGGGCTGT
TCTTTTTGTGCAACGGGAACGATGGGTATCAAGGGCAACCTTCTCGGCGG
AGAGATCTTGGAGCAGCTCTACCATGCATCTGGGGTGGCATCCATTCGTA
AT

Synonyms

Publications