EWM27564.1, cds3089 (CDS) Nannochloropsis gaditana

Overview
NameEWM27564.1
Unique Namecds3089
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:706662..707150 -
Alignment locationCM002460.1:705701..706462 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27564.1
Productradical sam domain-containing protein
Orig transcript idgnl|cribi|Naga_100015g66.6380.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:706662..707150 -
CM002460.1supercontigCM002460.1:705701..706462 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016740transferase activity
GO:0003824catalytic activity
GO:0008173RNA methyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR004383rRNA_lsu_MTrfase_RlmN/Cfr
Homology
BLAST of EWM27564.1 vs. NCBI_GenBank
Match: gi|585109831|gb|EWM27564.1| (radical sam domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 852.432 bits (2201), Expect = 0.000e+0
Identity = 416/416 (100.00%), Postives = 416/416 (100.00%), Query Frame = 0
Query:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTRVSKKPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKGAPAVNDIEDLMDGGGRRGAKKGERPWGKNRGGGGAAGRKVARAALGGGQAAA 416
            MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTRVSKKPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKGAPAVNDIEDLMDGGGRRGAKKGERPWGKNRGGGGAAGRKVARAALGGGQAAA
Sbjct:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTRVSKKPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKGAPAVNDIEDLMDGGGRRGAKKGERPWGKNRGGGGAAGRKVARAALGGGQAAA 416          
BLAST of EWM27564.1 vs. NCBI_GenBank
Match: gi|669152282|ref|XP_008611703.1| (cfr family radical SAM enzyme [Saprolegnia diclina VS20] >gi|530736589|gb|EQC34831.1| cfr family radical SAM enzyme [Saprolegnia diclina VS20])

HSP 1 Score: 378.252 bits (970), Expect = 2.160e-125
Identity = 196/390 (50.26%), Postives = 265/390 (67.95%), Query Frame = 0
Query:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTR-VSKKPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKG-APAVNDIEDLMDGGGRRGAKKGER 388
            MVK R LSP P+ D   +  FLE  G+KQ+HA+++WK I       +Q  +    +    QLP  +   L  +F + ++ + EKHVS DGTVKLLV LQDG  VEAVI++H GRNTLCVSSQ+GCQMGC+FCATGTMGI  +L  GEILEQL HA  VA IRN+VFMGMGEPL NYDAV+ A++ MT V  F L+   +T+STVG++H I+++  D P + LALSLHAP+Q +R +IVP+AKA+P++KL+A   +H +    + + +EY++L+GVND  E A +LG+LL G SV VNLIPYN TDV  ++++P  +++  F+ +L  +Y +  TVR +HG +I GACGQLA+    K + A PK   P   DIEDL  G   R  K G++
Sbjct:    1 MVKKRVLSPAPLLDPKLLPEFLEAHGMKQVHAQKIWKYIASQ----VQAQNANVSIRDIPQLPKELYPLLEANFRIFSTTIAEKHVSRDGTVKLLVTLQDGHNVEAVIMKHSGRNTLCVSSQVGCQMGCTFCATGTMGIIADLAAGEILEQLAHAFCVAPIRNVVFMGMGEPLNNYDAVLGAIKAMTSV--FGLAPKYITLSTVGVIHRIRQLKEDAPLIRLALSLHAPTQEIRVKIVPTAKAYPLDKLMAAIDDHLKDRENRMVMMEYIMLRGVNDALETAHDLGRLLAGRSVHVNLIPYNATDVDAEYQSPTKEEIMAFHGILRQEYNIKVTVRENHGMDIDGACGQLAVK---KLDDALPKTKKPVQRDIEDL--GTTSRSPKSGKK 379          
BLAST of EWM27564.1 vs. NCBI_GenBank
Match: gi|813135587|ref|XP_012198540.1| (cfr family radical SAM enzyme [Saprolegnia parasitica CBS 223.65] >gi|641536972|gb|KDO30843.1| cfr family radical SAM enzyme [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 377.481 bits (968), Expect = 4.242e-125
Identity = 198/398 (49.75%), Postives = 265/398 (66.58%), Query Frame = 0
Query:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTR-VSKKPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKG--APAVNDIEDLMDGGGRRGAKKGERPWGKNRG 395
            MVK R LSP P+ D   +  FLE  G+KQ+HA+++WK I       +Q  +    +    QLP  +   L  +F + ++ + EKHVS DGTVKLLV LQDG  VEAVI++H GRNTLCVSSQ+GCQMGC+FCATGTMGI  +L  GEILEQL HA  VA IRN+VFMGMGEPL NYDAV+ A++ MT V  F L+   +T+STVG++H I+++  D P + LALSLHAP+Q +R +IVP+AKA+P++KL+A   +H +    + + +EY++L+GVND  E A +LG+LL G SV VNLIPYN TDV  ++++P  +++  F+ +L  +Y +  TVR +HG +I GACGQLA+    K + A PK    P   DIEDL  G   R  K G       RG
Sbjct:    1 MVKKRVLSPAPLLDPKLLPEFLEAHGMKQVHAQKIWKYIASQ----VQAQNANVSIRDIPQLPKELYPLLEANFRIFSTTIAEKHVSRDGTVKLLVTLQDGHNVEAVIMKHSGRNTLCVSSQVGCQMGCTFCATGTMGIIADLAAGEILEQLAHAFCVAPIRNVVFMGMGEPLNNYDAVLGAIKAMTSV--FGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQEIRVKIVPTAKAYPLDKLMAAIDDHLKDRENRMVMMEYIMLRGVNDALETAHDLGRLLAGRSVHVNLIPYNATDVDAEYQSPTKEEIMAFHGILRTEYNIKVTVRENHGMDIDGACGQLAVK---KLDDALPKTNKKPVQRDIEDL--GATSRAPKSGAGKKASTRG 387          
BLAST of EWM27564.1 vs. NCBI_GenBank
Match: gi|566010963|gb|ETI33874.1| (23S rRNA methyltransferase [Phytophthora parasitica P1569] >gi|567948486|gb|ETK74233.1| 23S rRNA methyltransferase [Phytophthora parasitica] >gi|567977154|gb|ETL27663.1| 23S rRNA methyltransferase [Phytophthora parasitica] >gi|570938501|gb|ETP03758.1| 23S rRNA methyltransferase [Phytophthora parasitica CJ01A1])

HSP 1 Score: 370.163 bits (949), Expect = 6.227e-122
Identity = 193/392 (49.23%), Postives = 256/392 (65.31%), Query Frame = 0
Query:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTRVSK-KPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKGAPAVNDIEDLMDGGGRR--GAKKGERP 389
            MVK R LSPLP FD+ ++  FL+  G K+LHA  +W+ + ++   T  +  G+         P  + A L EHF   T+ V  +  S DGTVKLL++LQDG  +EAVI+RH GRNTLCVSSQ+GCQMGC+FCATGT+GI  +L  GEILEQL HA+ VA IRN+VFMGMGEPL NYDAV+ A+R MT V  F L+   +T+STVG++H I++++ D P + LALSLHAP+Q +R +IVP++ A+P++KL+A   +H  + + + + VEY +L GVND  E A  LG+LL   SV VNLIPYN TDV   F +P  +D+  F+ VL   Y L  T+R +HG +I GACGQLAL     G            DIEDL   G RR    +K ++P
Sbjct:   15 MVKKRTLSPLPAFDQKALPEFLQTHGFKELHALTIWRYLAQHPDATFADIPGI---------PKTLRALLGEHFAHFTTSVTTEQRSADGTVKLLLKLQDGHEIEAVIMRHTGRNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTKV--FGLAPKYITLSTVGVIHRIRQLSRDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDDHLAMKEGRLVMVEYCMLAGVNDSIETAHILGKLLQNRSVHVNLIPYNTTDVGAQFHSPSPEDIRAFHAVLRDPYNLKATIRENHGTDIDGACGQLALKNKPDGS----------RDIEDL---GPRRTKAPRKNKKP 382          
BLAST of EWM27564.1 vs. NCBI_GenBank
Match: gi|570314719|gb|ETO62667.1| (23S rRNA methyltransferase [Phytophthora parasitica P1976])

HSP 1 Score: 369.777 bits (948), Expect = 6.527e-122
Identity = 193/392 (49.23%), Postives = 256/392 (65.31%), Query Frame = 0
Query:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTRVSK-KPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKGAPAVNDIEDLMDGGGRR--GAKKGERP 389
            MVK R LSPLP FD+ ++  FL+  G K+LHA  +W+ + ++   T  +  G+         P  + A L EHF   T+ V  +  S DGTVKLL++LQDG  +EAVI+RH GRNTLCVSSQ+GCQMGC+FCATGT+GI  +L  GEILEQL HA+ VA IRN+VFMGMGEPL NYDAV+ A+R MT V  F L+   +T+STVG++H I++++ D P + LALSLHAP+Q +R +IVP++ A+P++KL+A   +H  + + + + VEY +L GVND  E A  LG+LL   SV VNLIPYN TDV   F +P  +D+  F+ VL   Y L  T+R +HG +I GACGQLAL     G            DIEDL   G RR    +K ++P
Sbjct:    1 MVKKRTLSPLPAFDQKALPEFLQTHGFKELHALTIWRYLAQHPDATFADIPGI---------PKTLRALLGEHFAHFTTSVTTEQRSADGTVKLLLKLQDGHEIEAVIMRHTGRNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTKV--FGLAPKYITLSTVGVIHRIRQLSRDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDDHLAMKEGRLVMVEYCMLAGVNDSIETAHILGKLLQNRSVHVNLIPYNTTDVGAQFHSPSPEDIRAFHAVLRDPYNLKATIRENHGTDIDGACGQLALKNKPDGS----------RDIEDL---GPRRTKAPRKNKKP 368          
BLAST of EWM27564.1 vs. NCBI_GenBank
Match: gi|698817346|ref|XP_009841702.1| (23S rRNA methyltransferase [Aphanomyces astaci] >gi|574103205|gb|ETV68748.1| 23S rRNA methyltransferase [Aphanomyces astaci])

HSP 1 Score: 369.392 bits (947), Expect = 7.771e-122
Identity = 196/395 (49.62%), Postives = 257/395 (65.06%), Query Frame = 0
Query:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGK--QLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTR-VSKKPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKGAPAVNDIEDLMDGGGRRGAKKGERPWGK 392
            MVK R LSP P+ D A +  F+EE G+K +HA+++WK I      T  +A   A + +     LP+     L   F   T+ V E+H S DGTVKLL+ LQDG  +EAVI++H GRNTLCVSSQ+GCQMGC+FCATGTMGI  +L  GEILEQL HA  VA IRN+VFMGMGEPL NYDAV+ A+R MTDV  F L+   +T+STVG++H I+++  D P + LALSLHAP+Q LR QIVP+AKA+P++KL+    +H +    + + +EY++LK VN     A +LG+LL G SV +NLIPYN TDV  +F++P  D++  F  VL  DY L  T+R +HG +I GACGQLA+ +   G    P   P   DIEDL            ++P GK
Sbjct:    1 MVKKRVLSPAPLLDTALLTAFVEENGLKLVHAQKIWKHI-----STQVQAQSTADISVRDIPHLPSHAYPLLEAKFAAFTTTVAEQHTSSDGTVKLLITLQDGHNIEAVIMKHSGRNTLCVSSQVGCQMGCTFCATGTMGIIADLCAGEILEQLAHAFRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTDV--FGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQDLRVQIVPTAKAYPLDKLMLAIDDHLKDRDNRMVMMEYIMLKHVNVAIATAHDLGKLLAGKSVHINLIPYNATDVDAEFQSPTRDEIVAFKDVLRTDYNLKVTIRENHGMDIDGACGQLAVKKLEAGLPKSP-FVPEQRDIEDLGQRKKTSSKTTKKQPPGK 387          
BLAST of EWM27564.1 vs. NCBI_GenBank
Match: gi|675177037|ref|XP_008897403.1| (23S rRNA methyltransferase [Phytophthora parasitica INRA-310] >gi|568103227|gb|ETN17898.1| 23S rRNA methyltransferase [Phytophthora parasitica INRA-310])

HSP 1 Score: 369.007 bits (946), Expect = 1.710e-121
Identity = 192/391 (49.10%), Postives = 256/391 (65.47%), Query Frame = 0
Query:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTRVSK-KPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKGAPAVNDIEDLMDGGGR-RGAKKGERP 389
            MVK R LSPLP FD+ ++  FL+  G K+LHA  +W+ + ++   T  +  G+         P  + A L EHF   T+ V  +  S DGTVKLL++LQDG  +EAVI+RH GRNTLCVSSQ+GCQMGC+FCATGT+GI  +L  GEILEQL HA+ VA IRN+VFMGMGEPL NYDAV+ A+R MT V  F L+   +T+STVG++H I++++ D P + LALSLHAP+Q +R +IVP++ A+P++KL+A   +H  + + + + VEY +L GVND  E A  LG+LL   SV VNLIPYN TDV   F +P  +D+  F+ VL   Y L  T+R +HG +I GACGQLAL     G            DIEDL  G  R +  +K ++P
Sbjct:   15 MVKKRTLSPLPAFDQKALPEFLQTHGFKELHALTIWRYLAQHPDATFADIPGI---------PKTLRALLGEHFAHFTTSVTTEQRSADGTVKLLLKLQDGHEIEAVIMRHTGRNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTKV--FGLAPKYITLSTVGVIHRIRQLSRDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDDHLAMKEGRLVMVEYCMLAGVNDSIETAHILGKLLQNRSVHVNLIPYNTTDVGAQFHSPSPEDIRAFHAVLRDPYNLKATIRENHGTDIDGACGQLALKNKPDGS----------RDIEDL--GPQRTKAPRKNKKP 382          
BLAST of EWM27564.1 vs. NCBI_GenBank
Match: gi|570968792|gb|ETP31911.1| (23S rRNA methyltransferase [Phytophthora parasitica P10297])

HSP 1 Score: 369.007 bits (946), Expect = 1.729e-121
Identity = 192/391 (49.10%), Postives = 256/391 (65.47%), Query Frame = 0
Query:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTRVSK-KPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKGAPAVNDIEDLMDGGGR-RGAKKGERP 389
            MVK R LSPLP FD+ ++  FL+  G K+LHA  +W+ + ++   T  +  G+         P  + A L EHF   T+ V  +  S DGTVKLL++LQDG  +EAVI+RH GRNTLCVSSQ+GCQMGC+FCATGT+GI  +L  GEILEQL HA+ VA IRN+VFMGMGEPL NYDAV+ A+R MT V  F L+   +T+STVG++H I++++ D P + LALSLHAP+Q +R +IVP++ A+P++KL+A   +H  + + + + VEY +L GVND  E A  LG+LL   SV VNLIPYN TDV   F +P  +D+  F+ VL   Y L  T+R +HG +I GACGQLAL     G            DIEDL  G  R +  +K ++P
Sbjct:   15 MVKKRTLSPLPAFDQKALPEFLQTHGFKELHALTIWRYLAQHPDATFADIPGI---------PKTLRALLGEHFAHFTTSVTTEQRSADGTVKLLLKLQDGHEIEAVIMRHTGRNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTKV--FGLAPKYITLSTVGVIHRIRQLSRDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDDHLAMKEGRLVMVEYCMLAGVNDSIETAHILGKLLQNRSVHVNLIPYNTTDVGAQFHSPSPEDIRAFHAVLRDPYNLKATIRENHGTDIDGACGQLALKNKPDGS----------RDIEDL--GPQRTKAPRKNKKP 382          
BLAST of EWM27564.1 vs. NCBI_GenBank
Match: gi|568006656|gb|ETL80907.1| (23S rRNA methyltransferase [Phytophthora parasitica] >gi|568036491|gb|ETM34099.1| 23S rRNA methyltransferase [Phytophthora parasitica])

HSP 1 Score: 368.237 bits (944), Expect = 3.658e-121
Identity = 192/391 (49.10%), Postives = 256/391 (65.47%), Query Frame = 0
Query:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTRVSK-KPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKGAPAVNDIEDLMDGGGR-RGAKKGERP 389
            MVK R LSPLP FD+ ++  FL+  G K+LHA  +W+ + ++   T  +  G+         P  + A L EHF   T+ V  +  S DGTVKLL++LQDG  +EAVI+RH GRNTLCVSSQ+GCQMGC+FCATGT+GI  +L  GEILEQL HA+ VA IRN+VFMGMGEPL NYDAV+ A+R MT V  F L+   +T+STVG++H I++++ D P + LALSLHAP+Q +R +IVP++ A+P++KL+A   +H  + + + + VEY +L GVND  E A  LG+LL   SV VNLIPYN TDV   F +P  +D+  F+ VL   Y L  T+R +HG +I GACGQLAL     G            DIEDL  G  R +  +K ++P
Sbjct:   15 MVKKRTLSPLPAFDQKALPEFLQTHGFKELHALTIWRYLAQHPDATFADIPGI---------PKTLRALLGEHFAHFTTSVTTEQRSADGTVKLLLKLQDGHEIEAVIMRHTGRNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTKV--FGLAPKYITLSTVGVIHRIRQLSRDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDDHLAMKEGRLVMVEYCMLAGVNDSIETAHILGKLLQNRSVHVNLIPYNTTDVGAQFHSPSPEDIRAFHAVLRDPYNLKATIRENHGTDIDGACGQLALKNKPDGS----------RDIEDL--GPLRTKAPRKNKKP 382          
BLAST of EWM27564.1 vs. NCBI_GenBank
Match: gi|673051037|ref|XP_008879479.1| (23S rRNA methyltransferase [Aphanomyces invadans] >gi|574464798|gb|ETV91842.1| 23S rRNA methyltransferase [Aphanomyces invadans])

HSP 1 Score: 365.925 bits (938), Expect = 1.256e-120
Identity = 193/394 (48.98%), Postives = 261/394 (66.24%), Query Frame = 0
Query:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTR-VSKKPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGESAGPKGA-PAVNDIEDLMDGGGRRGAKKGERPWGK 392
            MVK R LSP P+ D A +  F+E  G+K +HA+++WK I     +   ++     +     LP+     L + F   T+ V E+H S DGTVKLL+ LQDG  +E+VI++H GRNTLCVSSQ+GCQMGC+FCATGTMGI  +L  GEILEQL HA  VA IRN+VFMGMGEPL NYDAV+ A+R MTD+  F L+   +T+STVG++H I+++  D P + LALSLHAP+Q LR QIVP+AKA+P++KL+    +H +    + + +EY++LK VN  P+ A +LG+LL G SV +NLIPYN TDV  +F++P  D++  F  +L  +Y L  TVR +HG +I GACGQLA+    K E+  PK +     DIEDL    G+R   K  +P  K
Sbjct:    1 MVKKRVLSPAPLLDPALLTAFVEANGLKLVHAQKIWKHI---SAQVQTQSTANISVRDVLHLPSHAYPLLEDSFATFTTTVTEQHTSSDGTVKLLITLQDGHNIESVIMKHSGRNTLCVSSQVGCQMGCTFCATGTMGIIADLCAGEILEQLAHAFRVAPIRNVVFMGMGEPLNNYDAVLTAIRAMTDI--FGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQDLRVQIVPTAKAYPLDKLMLAIDDHLKDRENRMVMMEYIMLKDVNVAPDTAHDLGRLLQGKSVHINLIPYNATDVDAEFQSPSQDEIVAFKDILRAEYHLKVTVRENHGMDIDGACGQLAV---KKLEAGLPKSSGLDQRDIEDL----GKR-TNKAPKPSKK 381          
The following BLAST results are available for this feature:
BLAST of EWM27564.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109831|gb|EWM27564.1|0.000e+0100.00radical sam domain-containing protein [Nannochloro... [more]
gi|669152282|ref|XP_008611703.1|2.160e-12550.26cfr family radical SAM enzyme [Saprolegnia diclina... [more]
gi|813135587|ref|XP_012198540.1|4.242e-12549.75cfr family radical SAM enzyme [Saprolegnia parasit... [more]
gi|566010963|gb|ETI33874.1|6.227e-12249.2323S rRNA methyltransferase [Phytophthora parasitic... [more]
gi|570314719|gb|ETO62667.1|6.527e-12249.2323S rRNA methyltransferase [Phytophthora parasitic... [more]
gi|698817346|ref|XP_009841702.1|7.771e-12249.6223S rRNA methyltransferase [Aphanomyces astaci] >g... [more]
gi|675177037|ref|XP_008897403.1|1.710e-12149.1023S rRNA methyltransferase [Phytophthora parasitic... [more]
gi|570968792|gb|ETP31911.1|1.729e-12149.1023S rRNA methyltransferase [Phytophthora parasitic... [more]
gi|568006656|gb|ETL80907.1|3.658e-12149.1023S rRNA methyltransferase [Phytophthora parasitic... [more]
gi|673051037|ref|XP_008879479.1|1.256e-12048.9823S rRNA methyltransferase [Aphanomyces invadans] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3097rna3097Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications