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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100015g67.6354.mrna |
| Orig protein id | gnl|cribi|Naga_100015g67.6354 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:703989..705499 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3096 ID=rna3096|Name=rna3096|organism=Nannochloropsis gaditana|type=mRNA|length=2088bp
ATGACACGAGCGGTTATATTGATACCGTCGGCCCTTGCGTGTCGACAGCA
CTCACCGTACCGACGAGCGATAGAAGCGGCCTTGATAGCACAGTTCAAGT
CGAGTAGTGGCGCCAACACGCTTACATGGCAGTGGCGAGAACCAGTTTAT
CAAACAACTTGTGTATCTGCTTATGACGATCGACCAGGCTGCAATGGTGG
TCCGGGAGGCTTTGCCAATGGTATGAAGATGGGCAGCCTGCAGGCCCAGG
CCCAAGCCTTGCTGAAGTCGGACCCCGACCTTGATTTCGTCTTGATTCCT
GGATTAGAGGCCCCATATCAAGCCAGGTATCTGACGCGGGTTTTCCGCAC
GGGAATGGATGATTCCAGCACCGACGGGAAGGGCCAAAAAATGAAGCGAG
CTGCGCCCTCCGCCTCGGCCGGCGTTTCCTCGATCATTCACGTCACGACC
CTACGCCTCGCCCCCGCGGAGCGCACCTATGCAACGGCAGCCGCACTTTG
CCGACACTTTGGCTGGAGCAATGTGGTACTCTTGAGCTCGGATGATGATC
GCATGCAATCTGCGCAGGGATTACGTCAACAGTTGACCGCCGCAGGCATC
CATATCCGCCGTCATCAAATATTTTCTCCTTCCCACACCTACCAAGGTGC
AGCAAGCTCCGCCTCCTCCTCATCCATCCTTTCACATGATCTAGATGCAA
TCCGCACTAGTGGAACTCGTATAGTCTTCCTCCTTTCCTCCTGTCGAGCC
ACTCACCAGGTTCTGAGCGCGGCGCGACAAAAGAAGATGCTAAGGGATTA
CGCCTGGGTAGTCCTGCATCCGAATTCTGCGTGCGCCTTGGATGACGCGC
CAAGCGGTTTTCACGATGCAGATGTCTCGGAGGAAGGGGAGTTGGCGCTC
TTGGAGATGTACCAAGGTGTGTTGGGCCTGGTCTGGGACGGCGCGACGGC
CGCGAACGGCGCGGCGTGGTCCTCCACCGGCAAGACAAGCAATTCGTCGG
ACATTTCCTCGCAGGCTGCCGGTGCTCTGAGCGACTTTTGTAGAGGCAGC
GATAGCCACGCATACGACGCCAGTGGCCCTCTAAGCGAGCGGGAGCCGGC
GGGTGCCCCGGCGGATGTGCTGGACCTGTCCCCTCGCTTCCTCTTCGAGA
CCATGCGACACTTGGCATCTCTTTCCTCCACGCCCTCGGCCAATCCCTCC
CCTGCGTCTTCGTCCCATCCTGTTGGTGAGGTCATGCGTGACACGGTGGG
GGGCAGTGACATGGACGGAGACGTGGTGCTGCACCCGGACCTAGCCGTAT
CGGTTTTGAGCTTCTCGGGCGCGCGGCGGGCGTCATGGGAGGCCTCAGGG
GGTAAACTTGCCTCCAACGACACTCACGGTGTGAGTGAGAGCGCGAGCCG
GGGTAAAAGACGTCGGGGGAGCAACAGCACCGCCAACAAGGACCCGGTAC
GGATTGAGGTCATCCATCAGCCTATCGCCCGCTTGGCTCTATCCCCCCAT
GGCATCGATCCGTCATCCTCCGCCCCTGCAGATCCCTTGGACAGTCTGGG
ACGCCTGGAGCTTTTGACGGCACGGCCCCTCCGGTGGCCTGGGGATGTGC
GAGCGCATCCGCGAGACCTGGTGGAGGGGTGGGGTACGCAAGGGGAGGGG
CCCGACTTCCTCTTCTCTCCCACGGCGGGGCGGGACATGCAGGGCCTGGT
CCATGGCCTTGGGCTCTGGTCGGTGATTTTTGGGATGGCCGCGATGTGCA
TTGCCCTGACGCCCTTGTGGAACTGGGTGTACAAGCGCCTGTTCAAGCGC
AAAGAGCTGTCTCCTCCCTGTCTGGACGGGGGCTGCGCACCCATCCCTGC
CATCAGCGAGGTGAAGGACGCGGCCAGCCAGGAGGAAGACCGCGCCTTCA
TTGCCACACGCATGGCGGAGCTCACCGAAAAGCAAGCGGAGCTCCTTCGA
TCCGTGGAGGTGGACATGAAAGACGTGGTAATGAAGCGGCGCGGGGGGGG
GCATCGGCCAGGGATCCTTCTCTATTGTGTACAAGGGATACTACCAGAAC
TCGCACGTGGCGATCAAGGTGTTGCGACGGGTGGATGA back to topprotein sequence of rna3096 >rna3096-protein ID=rna3096-protein|Name=rna3096|organism=Nannochloropsis gaditana|type=polypeptide|length=274bp
MSIKKQENLCTTMKAGVLVGVSLLLNAACVTRAFLTSYHPNGVLRSRPLP
CITASSKFHPRLLSRLSAYIEDDGDDLTDRSVSLLTQVAKALSKEVPVPS
FLVPPRAGDVGRVTSSVSSSTTTIMGWFPLSMGVALTLGNPVYPAAFLGF
LYLSRPTEAPDVAAAVAAVLVAGVVNPLLVSFTEATGLDDTFLARFPFFL
GAATSAYVLAQVLTEGKEVFQDAPRRAEKERVPGLKQERDLRFFDVKMKN
KNGTEGEEANLTVEVQEKPGQSEV back to topmRNA from alignment at CM002460.1:703989..705499+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3096 ID=rna3096|Name=rna3096|organism=Nannochloropsis gaditana|type=mRNA|length=1511bp|location=Sequence derived from alignment at CM002460.1:703989..705499+ (Nannochloropsis gaditana)
TGACGAGACGACACGCACGTCTAGTGGATGCCAGACACGTGGCAGCGACA
CGGGTCTCGCATACCACGCCCTCTTACAGAATAATATCTCCGATCCTGAA
ATGTTGTGCGCGGGCCACACATCCGCACGATAGCTGGGATTTTCACAAGG
ATTCGCGACCACATGGTGCGGAGGCGTGACTCCGGATTTTCCCCCAAGCC
CTACCGATGTAATTCGCGGGCCGCAACCCTGCCAAATCCACGGCACAAAC
CCTCCAAAAGGTTGAAAAAAAGCCAGAACCACATGATTTTATGAAGACAA
TACCCTATTGTCAATCAAGCAACGGGGCCTTGGTTGAGAGGCGGACATTG
GTCATATTGAACCCCGAGTGCCACGACTCGACCCGAATATCTCTCCTTTG
CGTCGTGTCGCCTAAAGCGGCTTGGCCGCCCTACCTCAACTGTGTTCTGA
TTCCCCAGAATGTGCCCTGCTTAACCCCTGTCCATGTGGATGTATGTCAA
TAAAAAAACAGGAAAACTTATGCACGACCATGAAAGCGGGAGTTCTCGTT
GGTGTATCTCTTCTTTTGAATGCGGCATGCGTCACACGCGCCTTCCTTAC
TTCGTATCACCCGAACGGTGTTCTCCGtagccgccccctcccttgcattA
CGGCTTCAAGTAAATTCCATCCACGACTTTTGAGTCGCCTAAGTGCCTAT
ATAGAGGATGACGGGGACGATCTCACGGACCGCTCTGTATCGCTGCTTAC
TCAAGTGGCCAAAGCCTTGAGCAAGGAGGTTCCagtgccctccttcctag
tGCCCCCCCGTGCCGGCGACGTGGGCCGGGTCACTTCCTCAGTTTCATCC
TCCACGACAACAATTATGGGCTGGTTTCCTCTGTCCATGGGTGTAGCCCT
TACTCTTGGCAACCCCGTGTATCCTGCGGCCTTTTTGGGGTTTCTCTATC
TGTCTCGCCCCACGGAGGCACCCGATGTGGCAGCTGCCGTGGCGGCCgtg
ctggtggcgggggtAGTGAACCCTTTATTGGTATCTTTCACCGAGGCTAC
GGGGCTGGATGATACATTTCtggcccgcttcccctttttccttggAGCTG
CCACCAGCGCCTACGTCCTGGCCCAGGTCTTgaccgaggggaaggaggtg
ttTCAGGATGCGCCGCGacgggcggagaaagagcgtGTTCCCGGGCTCAA
GCAGGAGAGAGATCTGAGGTTCTTCGACGTCAAGATGAAGAACAAAAATG
GGacagaaggggaagaagccaaTTTGACGGTTGAAGTGCAAGAAAAACCG
GGGCAAAGCGAGGTGTAGGGCAGCCCCGGTCATGGTAGACAGCAAAGACA
TGTAAGGCCCGAGGATGTTAGTGTACATGAAAGAAATTCACCACCTACTC
AAAATGATGTGCCCTTGTACATATTTTTTTGTCCCCCTCTCGTCCTGGAC
GGCGGCCGCCTATCTCTTGGAGCCGTGCCGCTCTTGCACCACCCACACAG
TCAGGCCCACG back to topCoding sequence (CDS) from alignment at CM002460.1:703989..705499+ >rna3096 ID=rna3096|Name=rna3096|organism=Nannochloropsis gaditana|type=CDS|length=825bp|location=Sequence derived from alignment at CM002460.1:703989..705499+ (Nannochloropsis gaditana)
ATGTCAATAAAAAAACAGGAAAACTTATGCACGACCATGAAAGCGGGAGT
TCTCGTTGGTGTATCTCTTCTTTTGAATGCGGCATGCGTCACACGCGCCT
TCCTTACTTCGTATCACCCGAACGGTGTTCTCCGtagccgccccctccct
tgcattACGGCTTCAAGTAAATTCCATCCACGACTTTTGAGTCGCCTAAG
TGCCTATATAGAGGATGACGGGGACGATCTCACGGACCGCTCTGTATCGC
TGCTTACTCAAGTGGCCAAAGCCTTGAGCAAGGAGGTTCCagtgccctcc
ttcctagtGCCCCCCCGTGCCGGCGACGTGGGCCGGGTCACTTCCTCAGT
TTCATCCTCCACGACAACAATTATGGGCTGGTTTCCTCTGTCCATGGGTG
TAGCCCTTACTCTTGGCAACCCCGTGTATCCTGCGGCCTTTTTGGGGTTT
CTCTATCTGTCTCGCCCCACGGAGGCACCCGATGTGGCAGCTGCCGTGGC
GGCCgtgctggtggcgggggtAGTGAACCCTTTATTGGTATCTTTCACCG
AGGCTACGGGGCTGGATGATACATTTCtggcccgcttcccctttttcctt
ggAGCTGCCACCAGCGCCTACGTCCTGGCCCAGGTCTTgaccgaggggaa
ggaggtgttTCAGGATGCGCCGCGacgggcggagaaagagcgtGTTCCCG
GGCTCAAGCAGGAGAGAGATCTGAGGTTCTTCGACGTCAAGATGAAGAAC
AAAAATGGGacagaaggggaagaagccaaTTTGACGGTTGAAGTGCAAGA
AAAACCGGGGCAAAGCGAGGTGTAG back to top
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