EWM27538.1, cds3088 (CDS) Nannochloropsis gaditana

Overview
NameEWM27538.1
Unique Namecds3088
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:704482..705306 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27538.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100015g67.6354.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:704482..705306 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM27538.1 vs. NCBI_GenBank
Match: gi|585109805|gb|EWM27538.1| (hypothetical protein Naga_100015g67 [Nannochloropsis gaditana])

HSP 1 Score: 555.058 bits (1429), Expect = 0.000e+0
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0 
Query:    1 MSIKKQENLCTTMKAGVLVGVSLLLNAACVTRAFLTSYHPNGVLRSRPLPCITASSKFHPRLLSRLSAYIEDDGDDLTDRSVSLLTQVAKALSKEVPVPSFLVPPRAGDVGRVTSSVSSSTTTIMGWFPLSMGVALTLGNPVYPAAFLGFLYLSRPTEAPDVAAAVAAVLVAGVVNPLLVSFTEATGLDDTFLARFPFFLGAATSAYVLAQVLTEGKEVFQDAPRRAEKERVPGLKQERDLRFFDVKMKNKNGTEGEEANLTVEVQEKPGQSEV 274
            MSIKKQENLCTTMKAGVLVGVSLLLNAACVTRAFLTSYHPNGVLRSRPLPCITASSKFHPRLLSRLSAYIEDDGDDLTDRSVSLLTQVAKALSKEVPVPSFLVPPRAGDVGRVTSSVSSSTTTIMGWFPLSMGVALTLGNPVYPAAFLGFLYLSRPTEAPDVAAAVAAVLVAGVVNPLLVSFTEATGLDDTFLARFPFFLGAATSAYVLAQVLTEGKEVFQDAPRRAEKERVPGLKQERDLRFFDVKMKNKNGTEGEEANLTVEVQEKPGQSEV
Sbjct:    1 MSIKKQENLCTTMKAGVLVGVSLLLNAACVTRAFLTSYHPNGVLRSRPLPCITASSKFHPRLLSRLSAYIEDDGDDLTDRSVSLLTQVAKALSKEVPVPSFLVPPRAGDVGRVTSSVSSSTTTIMGWFPLSMGVALTLGNPVYPAAFLGFLYLSRPTEAPDVAAAVAAVLVAGVVNPLLVSFTEATGLDDTFLARFPFFLGAATSAYVLAQVLTEGKEVFQDAPRRAEKERVPGLKQERDLRFFDVKMKNKNGTEGEEANLTVEVQEKPGQSEV 274
[Close]
BLAST of EWM27538.1 vs. NCBI_GenBank
Match: gi|553183856|ref|XP_005853980.1| (hypothetical protein NGA_0445201 [Nannochloropsis gaditana CCMP526] >gi|422295082|gb|EKU22381.1| hypothetical protein NGA_0445201 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 304.679 bits (779), Expect = 1.060e-102
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 
Query:  125 MGWFPLSMGVALTLGNPVYPAAFLGFLYLSRPTEAPDVAAAVAAVLVAGVVNPLLVSFTEATGLDDTFLARFPFFLGAATSAYVLAQVLTEGKEVFQDAPRRAEKERVPGLKQERDLRFFDVKMKNKNGTEGEEANLTVEVQEKPGQSEV 274
            MGWFPLSMGVALTLGNPVYPAAFLGFLYLSRPTEAPDVAAAVAAVLVAGVVNPLLVSFTEATGLDDTFLARFPFFLGAATSAYVLAQVLTEGKEVFQDAPRRAEKERVPGLKQERDLRFFDVKMKNKNGTEGEEANLTVEVQEKPGQSEV
Sbjct:    1 MGWFPLSMGVALTLGNPVYPAAFLGFLYLSRPTEAPDVAAAVAAVLVAGVVNPLLVSFTEATGLDDTFLARFPFFLGAATSAYVLAQVLTEGKEVFQDAPRRAEKERVPGLKQERDLRFFDVKMKNKNGTEGEEANLTVEVQEKPGQSEV 150
The following BLAST results are available for this feature:
BLAST of EWM27538.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109805|gb|EWM27538.1|0.000e+0100.00hypothetical protein Naga_100015g67 [Nannochlorops... [more]
gi|553183856|ref|XP_005853980.1|1.060e-102100.00hypothetical protein NGA_0445201 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3096rna3096Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications