rna3094, rna3094 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3094
Unique Name	rna3094
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4020
Alignment location	CM002460.1:700685..701752 -

Link to JBrowse

Properties


Property Name	Value
Product	protein kinase
Orig transcript id	gnl\|cribi\|Naga_100015g69.6382.mrna
Orig protein id	gnl\|cribi\|Naga_100015g69.6382
Gene	PTK
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:700685..701752 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PTK	gene2972	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27566.1	cds3086	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3094	rna3094-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:700685..701752-
coding sequence from alignment at CM002460.1:700685..701752-

mRNA sequence

>rna3094 ID=rna3094|Name=rna3094|organism=Nannochloropsis gaditana|type=mRNA|length=4020bp
ATGGGGCGCCGCGAGAAAGCTGAGATGGAGGCTCGTCTCAAGGATATTCG
AGAGCAAATGTCGGAATTGAATATTGTGGTGGGGCAGCGGAGGCGAGAGA
TGAAGACACTGAAGGAGGGGTGGCAGTCAAATGGCTCTGGGAGGGACACT
GACCGGGGGGAAACAGGAGGGGGGAGGGGCGCTCTGAAAGGAAAAAAGGA
GCAAGAGGAGAGCACGGACTTAGACGAATGTCTGACGGGTATGTTTGGGG
ACGAAGAGGATGAGGAGGAAATGGAGGACAAGGGAGTAGACCGGAGCAGC
CTCTCTGGACCTGGTTCCTCGACACAAGCGCTCGCCAAGCACAAGGAAAT
AACTGAGCGGTCGGTACTTGGCGGGCTATTCGGCGACGACGATGACAGTG
ACGATACAGACGGGAGCGAAGGTGCACAGAAGGGCCGATTCTCCCCGTCC
ACACGGTCCTCTCTCCCTCCCCGCGAGACAGCTGAAGACAGCCTGCCCGC
TCTGTGTTCCCTCGCCCCTCCCTCGCCAGACCGCGCCATACCTGGAGTTG
CGGTAGAAGCGTCGTCCAAAACGGCTCCGCCCTCAACTCCGCAACCGCAA
TCGGTGGCTCCTGACTCAAGCCCAGCGCCTGCACTGGCCGTATCCTTGGC
GGCGGGCATCCCCAAGGGCTGGACTGGCAAGACACCACGGCGGCAGCTGG
AGGAGTACCTGAAACGGAAACGACTGGGCAAGGCTACCTTCCAAAAAACG
TCGGGGAAAGGTTGCGTGCTCACCCTGCGAGACATTTCGGGAAAATTCGA
ATCGGTCCAGGAGTTCGGGGCCTACGCCGACGCCGAGCACGCGGCCGCCA
CGCGCGCGCTCTACCGCCTAGAACCGAAGCTACAACTGTCGCGCGTCTTG
CCCCCTCCGTTCCGGGACTGGTGGGCGGAATGGCAGAACGAGGCCCGAAG
GCTGCGCGAGCAAGAGGTGGCGGCGGTCAAGCAGGGGAAGAGAGACCGCA
TCTCCCGACTTGTTGACTCCATGAGGGAAGGGGCTGCGCTGTCAGCGGGG
GAAGAGAGAACAGGCGATGTGCGTCAAGGCGGCGATCACTGCCACGTGAG
GGACAGTCCAGGGGTCCTTGCTCTTCCCAGCATGTCGGACATGAGTTGGG
AGGAGCAAGTATGCCTGGATGAAGGCCTGGTGGAGGCCGAGGGGGGAGAA
CGCGGGGCGCCGACGAGGGGCACCGGAAGTCAACGGGAGAAGACGGGCGG
TCCAAGGGGGGACACCGCGTTGGGAGAAAGACTCCGAAAGGCCTTCGAGG
CGAAGAGGGGGCAAGCCAGATACCAGGAGCTTGCGCGCGTACGACGGGAA
CTCCCAGTGGCTGCGACACGCGAAAGTATCTTGCACAGCATCGAAAAGGA
GTCCGTGGTCGTCATCTCGGGGGAGACTGGCTGCGGGAAGAGCACCCAGG
TCGCCCAATATATCCTGGAGGAAGCGTTGCTGCTTGGAGAGGGTCACAAC
GTCAATCTTGTCTGTACACAGCCCCGTCGGGTGGCAGCCGTGTCCCTCGC
AGAGAGAGTAGCTCAAGAGATGGGCGAAGAAGGCGGAGCTGGAGGCTCCG
GAGCATTGGTCGGGTATCAGATACGGATGGAGTCGAAGACAACTGCTGCT
ACACGGCTGACCTTTTGCACCACTGGCATTTTGCTTCGAAAGCTGCAGAC
AGATCCAGACTTGAGTCAATACACGCATATCATATTGGACGAGGTGCACG
AGCGTCAGGCATTGGGAGACTTTCTTTTGGTGGTCCTCCGCGACCTCCTG
AAACGGCGGCCGACCCTGCGTCTGGTCCTCATGTCTGCAACCGTGAATGC
CGACTTGTTCAGTTGGTACTTCGGTAATTGTCCGGTGTTTACAATCCCTG
GGCGTTGTTTTTCTGTGCAAGAGCAATATTTAGAGGATACTATAGAGGCA
ACAGGGCACTTTATTGAAGAGGGCTCGGTGTATGCGCTAAAGGAAGGCCG
GGCGCAGTACCAACGGGCGACAGTGGAGGTGTCGGGCCGGGGTGGGAATA
CTTATTCGCAGGCGTTGGAATGGCAAGAAGATGACGCGGTGACGGAAGGG
CGGCGCGGATCGCGATGGGTGGCATTCATGGAAGAATGTCGAGAGGCCGG
TTACAGTAAAGCCACGCTCAAATCCATGGGACGCGTGGACGAGTCAGTGG
TCAATTACGAGCTTTTGGAAGATCTCTTGCGCTACATCGTGGAAGTTGAG
CCTGCAAAGGTCGCGAAAGGCGAATCTGGTTGGAGGACAGGCGGTGCTAT
CTTGGTTTTTTTGCCGGGGCTGGGCGAGATCCGAGGAATACTCGAACGCT
TGCGCGGAGGTCGCTTTTTCCGCGATGACAATCAATACTGGCTTCTTCCT
CTACACTCCACCCTCTCCCCTGCAGAACAACGGAAAGTGTTTGAGCGCCC
ACGCCACGGCGTGCGAAAGGTCATACTCTCCACCAACATCGCCGAGACCT
CCGTGACGGTCGACGACGTCGTGTACGTGGTGGATTGTGGACTAGTCCGA
GAGATCCAGCAGACGAAAGGCCGCGGGGGTGGAAGGGCGCTTGTCACAAC
CTGGTGCTGTCGGGCCAGCGCCAAACAACGGATGGGACGTGCAGGGCGAG
TGGGTCCTGGGGTGTGCTTTCGTTTGTTCTCCCGCCATACGTTTCGAACT
CTCATGTCTGAATTCGCCGTTCCTGAGCTACAGCGCACGCCTTTAGAGGA
GCTCTGCCTGCAGATTCGGGCGAACGATCTCGCTCCCTCGTGTCGTGAAT
TTTTGCTCAAGGCTCCCGAGCCGCCTGAGTTGGTGGCTATCGACGCGGCG
GTCCGTGTGCTACGCGAAGTCGGGGCGCTGGCGTCTGCAGAGGATGGAGC
GGAGGGACGCGGACAGCAGAAACGAAAGGGAGGGGATAACGGGCGATGCC
TGGAAGGAGAGGAAGGAATCCTCACACCGCTGGGCATTCATTTGGCCAAG
TTGCCAATGGACGTGCGTCTGGGGAAAATGCTTGTCTTTGCATCCCTTTT
CCAATGCCTTGATCCTGTCCTTACTGTCGCCGCCGGTCTGAGCGGCATCA
AGTCTCCATTCCTCGCGCCCTTTGGAAAAGAGGCCGAAGCGCGTGCGATG
CATGCCAAACTTGAAGTCCGACAAAGCGATTTCTTGACGCTGGTGAACAC
ATTTCAAGCCTATCGATCGGCTTGCCTGCAGGGGGGAGCTGCAGAAGAGC
ATAAATTTTGTTCGAGTCACTTCCTGAGCAAAATTGCATTACGGGAGATG
GCAAGCTTGAAGAGTCAGTTTTTCGGCCTGCTGGTGGACATGCAGTTGGT
GCGCAAGCCTCCATGTCTCGGCCCGCAAGGGGGTGGCACGGTCAGCTACC
GGGCTTTGGAGGATTTCATGGCCGGTCCGGAGGCTTTGCGGAAGGGTGGT
GGAGTCAACGCTGAGGCCCAGAACATAAATCTCGTCCTGGCAGTTGTGGG
AGCGGGATTGTATCCGCATGTTGCCCATGCTGTGGCAGATCCTTCCAAGA
AAAATCCAAGCCTTTACCATGGGCCCATGAGCGCCCCATCGAGCCCTGTC
TACTTGCATCCCAGCTCGGTCAATTATGGTGTAACATATTTCACCTCACC
TTGGCTCGTATTTCACGAGAAATTTCACACCACTCGGGCTTACATTGCCC
CTACGTCGGTGGTGTCTCCCTATGCTCTTCTGCTTTTTGGAGGGCCTTTG
GTCGTTGATCACTTAAATAATCGAGTGGTCATCGATGAGTGGATCGAGTT
TACCTGTCCTGCTCGCACTGCGGTGCTCTTTCGAGAAATGAGAAAACGCC
TTGATGAGGTTCTAGAAGTCTTAGTTGCAAAACCCTTGGCGGGTTTGGCG
AATGTTGAGAGTCAGAAGGAGGGTGCGGTGGTCGATGCCATTGCCTCGCT
ACTCAGGGGTGAGGAGATTAAGGCTGCCTGGAAACCTGGAAGTGGTGATG
ACCCAATGAACAAAGGATAG

protein sequence of rna3094

>rna3094-protein ID=rna3094-protein|Name=rna3094|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MLHKDLRHPNVVMFRGASWRDGRLLMLIDYAGRGTLADVLRRSKGTLRWK
PVKLNMALGIAKGMAFLHQTRYYDMWTSSYQRCVVHRDLKPQNILVTDSY
HVQITDFGEARTVDHENTMTQVGTQLFVAPEVVRGERYSEKCDVYSFAVV
LLAMLELRPDVLDVFAESLPEVERSETGITKERLKEPEGVEVTDACKTCP
LNKANQPPPGVSLAQAQAAASTPEHECPLAQHKEFKGVVAHAVTRAIVYD
DFRPPIKGCPYQGLKTLIEKCWIPDVNDRPGFAAVVEALDGRVRREVSDY
VRPNGGSTSSHSTGSTSCFTSGSIDLMMVRDGSRQGFRVASGDVARLRAP
HGTNT

mRNA from alignment at CM002460.1:700685..701752-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3094 ID=rna3094|Name=rna3094|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp|location=Sequence derived from alignment at CM002460.1:700685..701752- (Nannochloropsis gaditana)
ATGCTGCACAAAGATCTGCGGCACCCCAATGTGGTCATGTTCCGGGGAGC
GTCGTGGCGAGACGGGCGGTTGCTGATGCTGATCGATTACGCGGGTCGTG
GGACATTGGCGGACGTGCTGCGACGTTCTAAAGGCACTTTGAGGTGGAAA
CCTGTCAAGCTTAACATGGCCCTCGGGATTGCCAAGGGCATGGCATTCTT
GCACCAGACGCGGTATTACGACATGTGGACGTCGTCCTATCAACGCTGTG
TGGTTCATCGGGATCTGAAGCCTCAGAACATACTTGTCACAGACTCTTAC
CACGTCCAGATTACCGACTTCGGAGAGGCCCGCACCGTCGACCACGAGAA
CACCATGACCCAAGTGGGCACACAGCTTTTTGTGGCTCCGGAGGTGGTCC
GGGGCGAGCGCTATTCCGAGAAATGCGACGTCTACTCCTTTGCGGTCGTC
CTCCTTGCCATGCTCGAGCTTCGGCCGGATGTCTTGGACGTTTTTGCGGA
GTCTTTGCCAGAGGTAGAGCGAAGCGAAACGGGAATTACGAAGGAGCGAC
TGAAGGAACCGGAAGGTGTGGAGGTCACGGACGCTTGTAAAACCTGCCCG
CTCAACAAGGCCAATCAGCCACCGCCCGGGGTATCCTTGGCGCAGGCTCA
GGCGGCGGCCTCCACGCCCGAACACGAATGCCCTCTGGCGCAGCATAAGG
AGTTCAAGGGGGTAGTGGCTCATGCCGTGACACGTGCAATTGTCTATGAT
GACTTCCGACCCCCTATTAAAGGTTGCCCGTATCAGGGTTTAAAAACACT
GATAGAAAAGTGCTGGATTCCCGATGTCAACGACCGTCCTGGTTTCGCGG
CAGTCGTCGAGGCTTTGGACGGGCGCGTCCGCCGGGAAGTAAGCGACTAC
GTCCGCCCTAATGGCGGCAGCACTAGCAGCCATTCAACGGGCTCTACCTC
TTGCTTTACTTCTGGGAGTATAGATCTCATGATGGTCCGAGACGGGTCTC
GGCAAGGATTTCGCGTGGCAAGTGGGGATGTAGCACGTTTACGTGCTCCA
CATGGCACAAATACATGA

Coding sequence (CDS) from alignment at CM002460.1:700685..701752-

>rna3094 ID=rna3094|Name=rna3094|organism=Nannochloropsis gaditana|type=CDS|length=1068bp|location=Sequence derived from alignment at CM002460.1:700685..701752- (Nannochloropsis gaditana)
ATGCTGCACAAAGATCTGCGGCACCCCAATGTGGTCATGTTCCGGGGAGC
GTCGTGGCGAGACGGGCGGTTGCTGATGCTGATCGATTACGCGGGTCGTG
GGACATTGGCGGACGTGCTGCGACGTTCTAAAGGCACTTTGAGGTGGAAA
CCTGTCAAGCTTAACATGGCCCTCGGGATTGCCAAGGGCATGGCATTCTT
GCACCAGACGCGGTATTACGACATGTGGACGTCGTCCTATCAACGCTGTG
TGGTTCATCGGGATCTGAAGCCTCAGAACATACTTGTCACAGACTCTTAC
CACGTCCAGATTACCGACTTCGGAGAGGCCCGCACCGTCGACCACGAGAA
CACCATGACCCAAGTGGGCACACAGCTTTTTGTGGCTCCGGAGGTGGTCC
GGGGCGAGCGCTATTCCGAGAAATGCGACGTCTACTCCTTTGCGGTCGTC
CTCCTTGCCATGCTCGAGCTTCGGCCGGATGTCTTGGACGTTTTTGCGGA
GTCTTTGCCAGAGGTAGAGCGAAGCGAAACGGGAATTACGAAGGAGCGAC
TGAAGGAACCGGAAGGTGTGGAGGTCACGGACGCTTGTAAAACCTGCCCG
CTCAACAAGGCCAATCAGCCACCGCCCGGGGTATCCTTGGCGCAGGCTCA
GGCGGCGGCCTCCACGCCCGAACACGAATGCCCTCTGGCGCAGCATAAGG
AGTTCAAGGGGGTAGTGGCTCATGCCGTGACACGTGCAATTGTCTATGAT
GACTTCCGACCCCCTATTAAAGGTTGCCCGTATCAGGGTTTAAAAACACT
GATAGAAAAGTGCTGGATTCCCGATGTCAACGACCGTCCTGGTTTCGCGG
CAGTCGTCGAGGCTTTGGACGGGCGCGTCCGCCGGGAAGTAAGCGACTAC
GTCCGCCCTAATGGCGGCAGCACTAGCAGCCATTCAACGGGCTCTACCTC
TTGCTTTACTTCTGGGAGTATAGATCTCATGATGGTCCGAGACGGGTCTC
GGCAAGGATTTCGCGTGGCAAGTGGGGATGTAGCACGTTTACGTGCTCCA
CATGGCACAAATACATGA

Synonyms

Publications