rna3087, rna3087 (mRNA) Nannochloropsis gaditana

Overview
Namerna3087
Unique Namerna3087
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1077
Alignment locationCM002460.1:681709..683050 +

Link to JBrowse

Properties
Property NameValue
Productisopentenyl-diphosphate delta-isomerase
Orig transcript idgnl|cribi|Naga_100015g76.6411.mrna
Orig protein idgnl|cribi|Naga_100015g76.6411
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:681709..683050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100015g76gene2965Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3087rna3087-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27595.1cds3079Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3087 ID=rna3087|Name=rna3087|organism=Nannochloropsis gaditana|type=mRNA|length=1077bp
ATGTCTCAAGGCGAGGACGGTCTCGTCTCGTTCTTCTTTTACATCCTTTT
CGTGTACCCCCTGACTTCCTGGTTCCTGAAGCCAGGACGCTTTCCTCGAA
AACGCGGGATAACCTACGCAATCAGTTTTCTGGCCATTTTAGCGTTGGGT
AAAACATATTTGGAGTTTCAAGACCGCGGCCCCAACCACTACAATGAGCT
GCACATCACGCGGGCATCAACCCCCTTGGAAATCAAAAAGGCGTACAAAA
AGATGTCATTAGAGCTGCATCCTGACAAAAACAAGAGCCCTACCGCGGCG
GAAGAATTTGCCCGGGTGAAAGAGGCATATGATACGTTGATGGACCCGGA
GTTGAGAGAAGTCTATAATAAGTTTGGTGCCGAGGGTATCAAGCAAAATC
GACGCTTTGACGAGACGCAACTCTTGTTGGAGATCGCTGTCTTCTACGTA
ACGTGGGGCATGCTGGCCTTCGTGTTGACGCTGGGGAAAGCCTCCAGCAC
TGCCCGGAACTGGATCTACACTGGACAGATTGCTATGTTGATCGCGGAGA
TCTCCCTCATGCTACAGGAGACGAAGCTTCCGAGCTGGCTCCTGCCCACG
TGGACAGAGCACGAGTTCGTCTTTCTGATGCGGTCGCTGTTCCCGGCTTT
CATGAATGGCTGTCGGTGCCTGTGCGGGTTCTTATACGTGGATGTGGACG
AGCAGGCGCGGCAGAAGATGGAGCACCTGGAGGCTCAGAACAAGGACATC
TTGATGGTCCTGCGCGACATTCAAGTCAACATGCAGTCCATTCAGGCCAG
CGGCGGGAGCGGAGGGAACTACAGGAGCCTCGGGGGGGGCTCGTCGGCGG
CGGGGACGCTAAGTGGCGGCCCTGTGATCAAGGCAACACCGACCGGGAAA
ATCAAAGAGATGGAGGAACGCTTGCGGCAACAGAGAGAACGCGGATCCAG
CCGGGTCTCAGAGCCTGTGAAGGCCGGGGCGGCGGAGAAGGCAGGGGGGG
GATTCCAGGTGTGGTGGGCGATTTTGCTGTACGTGGTCTTCCACTTTGTC
TTCGCCAACAACAGTGGGAACTCTTGA
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protein sequence of rna3087

>rna3087-protein ID=rna3087-protein|Name=rna3087|organism=Nannochloropsis gaditana|type=polypeptide|length=332bp
MSFSRGYCIFSAFITLFDNSMSLSLQLPRFCHAFLRFPGTNAGVSHAINL
HKRAISTQGVTRCAATSRSAFDPEQARLFEEEQIVAVTFDDKPLKPISKR
AGHENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHP
LWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHY
ISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRA
ELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMER
WLYTWWPDVGADMGKLEKHRDTARIHRIGRVD
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mRNA from alignment at CM002460.1:681709..683050+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3087 ID=rna3087|Name=rna3087|organism=Nannochloropsis gaditana|type=mRNA|length=1342bp|location=Sequence derived from alignment at CM002460.1:681709..683050+ (Nannochloropsis gaditana)
AACAGAGAGGCCTAagagccttccccccgcgTTTGGGACGTTCTCGGCTA
CATGATCAGAGGAAATACTGACCTGTTGCACGCGGAAATATGCTCCACAA
CCACTTTCACCACAGCATTCAAGGACAGGCTGGCGGGACCGACGGGTTCA
CTCACAAATTGCCTCCAGCACTGTCCGCGGgatcccccacctcctcacct
cccctgTTCAACTTAGGTCGAAAGAGCTTAATGACGCCTTGAATGTCCTT
TAGCCGCGGATATTGCATTTTTAGTGCATTTATCACCCTTTTCGACAATT
CCATGTCACTGTCCCTGCAATTACCACGTTTTTGCCATGCTTTTCTGCGG
TTTCCAGGGACGAATGCCGGCGTTTCGCATGCCATAAACCTGCACAAAAG
GGCTATTAGCACGCAAGGCGTAACCAGATGCGCCGCAACCTCGCGTTCTG
CCTTCGATCCCGAGCAGGCGCGACTCTTCGAAGAAGAGCAGATTGTCGCG
GTGACTTTCGATGACAAACCCCTCAAACCCATTTCCAAGCGGGCAGGACA
TGAAAATCGAAAGGGCCCGCCTTTGCATCGAGCTTTCTCCGTTTTCCTGT
TCGACACGCAGAATCGACTGCTCTTGCAAAAGCGTGCCCCTACCAAGATT
ACATTTCCCAACGCTTGGACCAATACCTGCTGCTCGCACCCTTTGTGGAG
CGAGCACGAGCTCGGGGACGACCGGCAGGACCCTGTCCTGGGCTGCAAGC
GCGCAGCCATTCGGAAGCTCGAGCATGAGCTCGGCATCCCAATCTCCTCT
CTGAGACATGAGGACTTCATTTACATGTCTCGCATCCACTACATCAGCGA
CTCTGGCGCCGAGTGGGGGGAGCACGAAATCGACTACATTCTGCTGGCTC
GGAAAGACGTGGTCCTGACACCCAACGAGAACGAGGTCTCCGAGACGCGC
TACGTGGCCGCCCCCGAGCTCAAGGCCATGATGCGCAGGGCGGAATTGCA
CCGGGGCGAGAGTCCGGAGGTCATACTGGCCGAAGACGCGGCGTTGGGCG
GGGCAcagggggtaggagggcgggacccggagcaggaggacgtgcgggGC
CACATTTACTTTACGCCCTGGAGCCGGGCTATCATGGAGCGATGGCTGTA
TACGTGGTGGCCGGATGTGGGCGCGGATATGGGCAAGCTCGAGAAACACC
GGGACACAGCACGGATCCATCGGATCGGTCGCGTGGATTGAGATGGGGCA
GGAGCCCCGAGACAGCGACTGAGCAGCTCTGAAATCGATTGTTttaagga
ggaggaggaaagaacgATCACACAATGATGTGTGGCTGCGAG
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Coding sequence (CDS) from alignment at CM002460.1:681709..683050+

>rna3087 ID=rna3087|Name=rna3087|organism=Nannochloropsis gaditana|type=CDS|length=999bp|location=Sequence derived from alignment at CM002460.1:681709..683050+ (Nannochloropsis gaditana)
ATGTCCTTTAGCCGCGGATATTGCATTTTTAGTGCATTTATCACCCTTTT
CGACAATTCCATGTCACTGTCCCTGCAATTACCACGTTTTTGCCATGCTT
TTCTGCGGTTTCCAGGGACGAATGCCGGCGTTTCGCATGCCATAAACCTG
CACAAAAGGGCTATTAGCACGCAAGGCGTAACCAGATGCGCCGCAACCTC
GCGTTCTGCCTTCGATCCCGAGCAGGCGCGACTCTTCGAAGAAGAGCAGA
TTGTCGCGGTGACTTTCGATGACAAACCCCTCAAACCCATTTCCAAGCGG
GCAGGACATGAAAATCGAAAGGGCCCGCCTTTGCATCGAGCTTTCTCCGT
TTTCCTGTTCGACACGCAGAATCGACTGCTCTTGCAAAAGCGTGCCCCTA
CCAAGATTACATTTCCCAACGCTTGGACCAATACCTGCTGCTCGCACCCT
TTGTGGAGCGAGCACGAGCTCGGGGACGACCGGCAGGACCCTGTCCTGGG
CTGCAAGCGCGCAGCCATTCGGAAGCTCGAGCATGAGCTCGGCATCCCAA
TCTCCTCTCTGAGACATGAGGACTTCATTTACATGTCTCGCATCCACTAC
ATCAGCGACTCTGGCGCCGAGTGGGGGGAGCACGAAATCGACTACATTCT
GCTGGCTCGGAAAGACGTGGTCCTGACACCCAACGAGAACGAGGTCTCCG
AGACGCGCTACGTGGCCGCCCCCGAGCTCAAGGCCATGATGCGCAGGGCG
GAATTGCACCGGGGCGAGAGTCCGGAGGTCATACTGGCCGAAGACGCGGC
GTTGGGCGGGGCAcagggggtaggagggcgggacccggagcaggaggacg
tgcgggGCCACATTTACTTTACGCCCTGGAGCCGGGCTATCATGGAGCGA
TGGCTGTATACGTGGTGGCCGGATGTGGGCGCGGATATGGGCAAGCTCGA
GAAACACCGGGACACAGCACGGATCCATCGGATCGGTCGCGTGGATTGA
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Synonyms
Publications