EWM27595.1, cds3079 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27595.1 vs. NCBI_GenBank
Match: gi|585109862|gb|EWM27595.1| (isopentenyl-diphosphate delta-isomerase [Nannochloropsis gaditana]) HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query: 1 MSFSRGYCIFSAFITLFDNSMSLSLQLPRFCHAFLRFPGTNAGVSHAINLHKRAISTQGVTRCAATSRSAFDPEQARLFEEEQIVAVTFDDKPLKPISKRAGHENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARIHRIGRVD 332
MSFSRGYCIFSAFITLFDNSMSLSLQLPRFCHAFLRFPGTNAGVSHAINLHKRAISTQGVTRCAATSRSAFDPEQARLFEEEQIVAVTFDDKPLKPISKRAGHENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARIHRIGRVD
Sbjct: 1 MSFSRGYCIFSAFITLFDNSMSLSLQLPRFCHAFLRFPGTNAGVSHAINLHKRAISTQGVTRCAATSRSAFDPEQARLFEEEQIVAVTFDDKPLKPISKRAGHENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARIHRIGRVD 332
BLAST of EWM27595.1 vs. NCBI_GenBank
Match: gi|1127418103|gb|OLL22636.1| (Isopentenyl-diphosphate Delta-isomerase [Neolecta irregularis DAH-3]) HSP 1 Score: 214.927 bits (546), Expect = 6.127e-65 Identity = 123/274 (44.89%), Postives = 154/274 (56.20%), Query Frame = 0
Query: 57 TQGVTRCAATSRSAFDPEQARLFEEEQIVAVTFDDKPLKPISKRAGH--ENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARIHRI 328
T +T + + D EQ RL +E IV V DDKP+ SK+ H N K LHRAFSVFLF+T N+LLLQKRA KITFP WTNTCCSHPL E GD + V G K AA RKLEHELGIP + EDF +++RIHY++ S WGEHEIDYIL +KDV L N NEVSETRYV +LK M+ +DP + TPW + I E +LY WW ++G+++ ++ +D IHR+
Sbjct: 22 TGAITDIDLSLHTGLDQEQIRLMDEVCIV-VGKDDKPVGSASKKTCHLMTNIKAGLLHRAFSVFLFNTNNQLLLQKRADGKITFPQMWTNTCCSHPLAIAGEYGDCIETSVEGVKIAAQRKLEHELGIPNEDVPLEDFHFLTRIHYLAPSDVIWGEHEIDYILFIQKDVRLDINLNEVSETRYVTQEQLKEML-----------------------------KDP-------MLSHTPWFKLIYETFLYKWWNELGSNIKNIQVLKDLETIHRM 258
BLAST of EWM27595.1 vs. NCBI_GenBank
Match: gi|67516595|ref|XP_658183.1| (hypothetical protein AN0579.2 [Aspergillus nidulans FGSC A4] >gi|29468178|gb|AAO85433.1|AF479816_1 isopentenyl diphosphate isomerase [Aspergillus nidulans] >gi|40747522|gb|EAA66678.1| hypothetical protein AN0579.2 [Aspergillus nidulans FGSC A4] >gi|259489156|tpe|CBF89196.1| TPA: Isopentenyl diphosphate isomerasePutative uncharacterized protein ; [Source:UniProtKB/TrEMBL;Acc:Q874I0] [Aspergillus nidulans FGSC A4]) HSP 1 Score: 204.912 bits (520), Expect = 7.381e-61 Identity = 120/280 (42.86%), Postives = 151/280 (53.93%), Query Frame = 0
Query: 53 RAISTQGVTRCAATSR--SAFDPEQARLFEEEQIVAVTFDDKPLKPISKRAGH--ENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARIHRI 328
R + Q T A S + +D EQ RL +E IV + DDKP+ SK+ H N LHRAFSVFLFD+QNRLLLQ+RA KITFP+ WTNTCCSHPL E G +LG KRAA RKL HELGI + E F + +RIHY + S +WGEHEIDYIL + DVVL PN NEV +TRYV+A ELK M ++ L FTPW + I L+ WW +G+ L++++ +I R+
Sbjct: 28 REVLPQATTTSVANSNDLAGYDEEQVRLMDEVCIV-LDDDDKPIGSASKKTCHLMTNIDRGLLHRAFSVFLFDSQNRLLLQQRASEKITFPDMWTNTCCSHPLGIPGETGSQLDAAILGVKRAAQRKLNHELGIKPEEVPIEKFEFFTRIHYKAPSDGKWGEHEIDYILFIQADVVLEPNLNEVRDTRYVSADELKEMFKQTNLK------------------------------------FTPWFKLICNSMLFEWWSHLGS--PSLDQYKGETQIRRM 268
BLAST of EWM27595.1 vs. NCBI_GenBank
Match: gi|1002215236|gb|KXT10349.1| (hypothetical protein AC579_9164 [Pseudocercospora musae]) HSP 1 Score: 203.756 bits (517), Expect = 1.453e-60 Identity = 119/278 (42.81%), Postives = 150/278 (53.96%), Query Frame = 0
Query: 61 TRCAATSRSA--------FDPEQARLFEEEQIVAVTFDDKPLKPISKRAGH--ENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARIHRI 328
T+ AA +RSA +D EQ RL +E IV + DD P+ SK+ H EN LHRAFSVFLFD+Q+RLLLQ+RA KITFP+ WTNTCCSHPL E G +LG KRAA RKL+ ELGI + + E F +++RIHY++ S +WGEHEIDYIL + DV + N NEV T+YV A ELK M R G + FTPW + I L+ WW ++ G LEKH + I R+
Sbjct: 27 TQLAAQTRSATQDADLAGYDEEQIRLMDEVCIV-LDNDDLPIGSASKKVCHLMENINKGLLHRAFSVFLFDSQDRLLLQQRASEKITFPDLWTNTCCSHPLGVPGETGSSLDAAILGVKRAAQRKLDQELGIKAAQVPIEKFKFLTRIHYLAPSDGKWGEHEIDYILFIKADVDVDANPNEVQATKYVNADELKEMFR------------------------------------DGKLKFTPWFKLICNSMLFEWWQNLN---GGLEKHMNEMEIRRM 264
BLAST of EWM27595.1 vs. NCBI_GenBank
Match: gi|584390825|emb|CDK28932.1| (unnamed protein product [Kuraishia capsulata CBS 1993]) HSP 1 Score: 203.371 bits (516), Expect = 2.609e-60 Identity = 115/253 (45.45%), Postives = 147/253 (58.10%), Query Frame = 0
Query: 70 AFDPEQARLFEEEQIVAVTFDDKPLKPISKRAGH--ENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHR 320
+D EQ RL EE IV + +DD P+ +K+ H +N LHRAFSVFLFD+Q+RLLLQ+RA KITFP+ WTNTCCSHPL ELG D V G + AA RKLE ELGI + + F +++RIHY++ S WGEHEIDYIL+ R D V+TPN NEV + +YV A ELKAM ED++L FTPW + I E +L+ WW A++GKL++ R
Sbjct: 54 GYDEEQIRLMEENCIV-LDYDDIPVGAATKKVCHIMDNIDRGLLHRAFSVFLFDSQDRLLLQQRADEKITFPSMWTNTCCSHPLCVPGELGSDLDAAVRGAQSAAQRKLEQELGIAARFVPVDGFKFLTRIHYMAPSNGIWGEHEIDYILITRADPVVTPNPNEVKDIKYVTAAELKAMF----------------EDSSLT--------------------FTPWFKLICESYLFKWW----ANLGKLDQFR 265
BLAST of EWM27595.1 vs. NCBI_GenBank
Match: gi|1102182344|ref|XP_019027108.1| (isopentenyl-diphosphate delta-isomerase [Saitoella complicata NRRL Y-17804] >gi|813209666|dbj|GAO49340.1| hypothetical protein G7K_3491-t1 [Saitoella complicata NRRL Y-17804] >gi|1063232875|gb|ODQ55995.1| isopentenyl-diphosphate delta-isomerase [Saitoella complicata NRRL Y-17804]) HSP 1 Score: 201.83 bits (512), Expect = 4.756e-60 Identity = 114/262 (43.51%), Postives = 144/262 (54.96%), Query Frame = 0
Query: 70 AFDPEQARLFEEEQIVAVTFDDKPLKPISKRAGH--ENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARIHRIG 329
+DPEQ +L EE IV + +DKPL SK+ H EN LHRAFSVFLFD +NRLLLQ+RA KITFP WTNTCCSHPL E G D VLG KRAAIRKL+ ELGIP S + + F Y++RIHY++ S WGEHEIDYIL R V N NE+ + +YV+ E+++M D A G FTPW + I E +L+ WW ++ + L +D IH++
Sbjct: 16 TYDPEQVKLMEEVCIV-IDENDKPLGSASKKTCHLMENINNNLLHRAFSVFLFDEENRLLLQQRADEKITFPGMWTNTCCSHPLSIPSETGSDLPSAVLGVKRAAIRKLDQELGIPASQVPIDKFTYLTRIHYVAPSDGLWGEHEIDYILFIRVPVTHAANPNEIKDVKYVSREEMQSMFV----------------DPAYEGK------------------FTPWFKLICETFLFKWWKEL-EEKDDLAAVKDEENIHKLA 241
BLAST of EWM27595.1 vs. NCBI_GenBank
Match: gi|671694962|emb|CDS09682.1| (hypothetical protein LRAMOSA02359 [Lichtheimia ramosa]) HSP 1 Score: 201.06 bits (510), Expect = 5.771e-60 Identity = 114/263 (43.35%), Postives = 147/263 (55.89%), Query Frame = 0
Query: 69 SAFDPEQARLFEEEQIVAVTFDDKPLKPISKRAGH--ENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARIHRIG 329
+ +D EQARL EE IV + +D + SK+ H EN LHRAFSVFLFD++NRLLLQ+RAP KITFPN WTNTCCSHPL + EL ++ Q LG + AA RKLEHELGIP + + F Y++RIHY++ S WGEHEIDYI + +V L N NEVS T+YV EL+AMM + + TPW + I + +L+ WW + + LE +D IHR+G
Sbjct: 6 AQYDEEQARLMEEMCIV-IDENDNRVGADSKKTCHLMENINQGLLHRAFSVFLFDSENRLLLQQRAPEKITFPNMWTNTCCSHPLNTPSELVEENQ---LGARTAAQRKLEHELGIPPEQVPLDKFEYLTRIHYVAPSDGTWGEHEIDYIFFIKSNVTLNVNPNEVSNTKYVTQQELRAMMDDKD------------------------------------VPMTPWFKLICDTFLFKWWEKIDS----LETEKDENTIHRLG 224
BLAST of EWM27595.1 vs. NCBI_GenBank
Match: gi|1069941485|ref|XP_018296941.1| (isopentenyl-diphosphate delta-isomerase [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026594498|gb|OAD78901.1| isopentenyl-diphosphate delta-isomerase [Phycomyces blakesleeanus NRRL 1555(-)]) HSP 1 Score: 196.438 bits (498), Expect = 2.952e-58 Identity = 112/267 (41.95%), Postives = 147/267 (55.06%), Query Frame = 0
Query: 65 ATSRSAFDPEQARLFEEEQIVAVTFDDKPLKPISKRAGH--ENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARIHRIG 329
A +D EQARL EE I+ + DDKP+ SK+ H +N LHRAFSVFLFD+QNRLLLQ+RA KITFP+ WTNTCCSHPL + EL + Q LG + AA RKL+HELGIP + + F Y++RIHY++ S WGEHEIDYI + DV + P+ NE+ + +YV EL+AM DP ++ TPW + I +L+ WW + +E +DT IHR+G
Sbjct: 2 APDLKNYDEEQARLMEEMCII-IDKDDKPIGADSKKTCHLMDNINNGLLHRAFSVFLFDSQNRLLLQQRASEKITFPDMWTNTCCSHPLNTPSELVEKDQ---LGARTAAQRKLDHELGIPAHQVPLDSFKYLTRIHYLAPSDGLWGEHEIDYIFFVKADVTVKPSPNEIRDIKYVTPDELRAMF-----------------------------ADP-------NVPMTPWFKLICNTFLFDWWKKIDT----IETEKDTKTIHRLG 224
BLAST of EWM27595.1 vs. NCBI_GenBank
Match: gi|682299275|gb|KFY12005.1| (hypothetical protein V491_06953 [Pseudogymnoascus sp. VKM F-3775]) HSP 1 Score: 197.208 bits (500), Expect = 3.841e-58 Identity = 120/281 (42.70%), Postives = 152/281 (54.09%), Query Frame = 0
Query: 54 AISTQGVTRC---AATSRSAF---DPEQARLFEEEQIVAVTFDDKPLKPISKRAGH--ENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSG-AEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARI 325
AI+ + R TS +AF D EQ RL +E IV + +DKP+ SK+ H N LHRAFSVFLFD+QNRLLLQ+RA KITFP+ WTNTCCSHPL E GD+ + V G K AA RKL+HELGI + EDF +++RIHY + G +WGEHEIDYIL + DV L P+ NEV + +YV A ELKAM + + L FTPW + I E L+ WW + A + K E + R+
Sbjct: 12 AITADNILRLFPDIDTSSAAFEGHDAEQIRLMDEVCIV-LDENDKPIGNFSKKICHLMTNIDKGLLHRAFSVFLFDSQNRLLLQQRATEKITFPDMWTNTCCSHPLGIPGEGGDELAEAVSGVKNAARRKLDHELGIKPEQVPFEDFRFLTRIHYKAPCGDGKWGEHEIDYILFIKADVDLNPSPNEVRDVKYVTADELKAMFKDSSL------------------------------------VFTPWFKLICESLLFDWWAHLDAGLEKFENESEIRRM 255
BLAST of EWM27595.1 vs. NCBI_GenBank
Match: gi|1183441136|gb|ORY65311.1| (NUDIX hydrolase domain-like protein [Pseudomassariella vexata]) HSP 1 Score: 197.208 bits (500), Expect = 4.062e-58 Identity = 113/256 (44.14%), Postives = 144/256 (56.25%), Query Frame = 0
Query: 72 DPEQARLFEEEQIVAVTFDDKPLKPISKRAGH--ENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQDPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRDPEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARI 325
D EQ RL +E IV + DDKP+ SK+ H N LHRAFSVFLFD QNRLLLQ+RAP KITFP+ WTNTCCSHPL E G + D V G K AA RKL+HELGIP + EDF +++RIHY + S +WGEHEIDYIL + +V L N+NEV +T+YV+ ELKA+ DP+ + FTPW + I E L+ WW + + + K ++ R+
Sbjct: 36 DEEQIRLMDEVCIV-LDNDDKPIGTASKKLCHLMTNIDKGLLHRAFSVFLFDDQNRLLLQQRAPEKITFPDMWTNTCCSHPLHIPSETGSNLPDSVQGVKNAAQRKLDHELGIPKEQVPIEDFHFLTRIHYKAPSDGKWGEHEIDYILFIKANVDLDVNKNEVQDTKYVSPEELKALF-----------------------------ADPK-------LKFTPWFKLICESMLFEWWKHLDSGLDKFLNEQEIRRM 254 The following BLAST results are available for this feature:
BLAST of EWM27595.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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