rna3085, rna3085 (mRNA) Nannochloropsis gaditana

Overview
Namerna3085
Unique Namerna3085
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1320
Alignment locationCM002460.1:679448..679699 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100015g78.6374.mrna
Orig protein idgnl|cribi|Naga_100015g78.6374
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:679448..679699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100015g78gene2963Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27558.1cds3077Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3085rna3085-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3085 ID=rna3085|Name=rna3085|organism=Nannochloropsis gaditana|type=mRNA|length=1320bp
GTCGATCAGAGCTTGTGGTGACAAGAACAACCGCCTTCTCGTTCCTGATT
AATTTCCTCCCTGCTCACATGCACATAGCAGACGCAAACACCGACTGCAG
AGCTCACTTTCCGCTTGTTGTGGTACAGTTGTGTCGCCATGTCGACGGCG
CTCTCCATACTTGGAGTTGCTGGTTTCATGGAAGCTGTAGCTACGCCCTT
GGGGCTTTGGACACCAGCAACATTCTGTTTGGTTGTACAATGGCTCGCCT
TTATTCCTGCATACTTTTGGAGGACGGAGATGTTTTACGACCTGACAGGA
AGCCTCACGTTCCTCGCTACCATGTTCCTGAACCTGTATCACGGGCCTTG
GCCCCCACACCCACGGCAGCAAATGGCTTCTTTTTTCATTATGGTGTGGG
CATTCCGCCTAGGTTATTTCCTGTTCACCCGCATCTTGCAACATGGAAAA
GACTCGCGTTTTGATACAGTGAAACATGAGCCGTTGCGCTTTCTGCAATA
CTGGACCGTGCAAGGCCTGTGGGTTTTCCTGACTTGCTTGCCAGTGCTCA
TATGTAGCACGAAAAAGGATTCAAACATGCGAAACCCCGACTGGCCCGTG
CCGTCCGATTTGATAGGCATGCTGGTCTTCTCACTCGGCCTGGGCCTCGA
AATGCTGGCTGACTTCCAGAAGTTCCAGTGGCAAAACGACTGGCAACACC
GGGACGATTTCATCAACATAGGATTATGGCGGTACTCCCGGCATCCCAAT
TACGCGGGGGAGATAGTGCTGCACTGTGGGGTCCTTCTCCTTGCCTCAGG
TTCGTATGATCGGCCGGTGGAATGGGGACTTGCACTCCTGGGGCCTGGCT
TTATCACCACCTTGCTGTACGGAATCAGCCTGCCCATGGTGGAGCGAAAG
GCAAACATCCGCTGGAAAGACAACACCTCCTACAAGACATACATGCAAAA
GACCCCGGCGATTTTCCCGTTTCCTAAATGGTCGTGAGTGGAGGATGTCG
AAAGAGGAAGCGAAGGCGTGCCCGGAGCGACCGGAGGGAGTCTTGGCGAG
AGGAACACAGACATGCATAGACACTGTCTAAAAACGTGAAGAGCACGAAA
ATAGTGAAAAATGAAGGGCAACAAGCTGTACATAAAAAATAGGCCATGGT
TGACCCAATTTGTAGTCACCGTACCCCGCGCTTAACGGGCTCGAAGGTCG
ATCCAACCTGATCACATGCCAATGCTGTTACGAGCAATATATTGGTATGG
CGTTTAAGATCGACGTGTCTTTTTCGTTGCAATGAAGACATGAAGTCGGC
AATAGACTGGATACACAGCA
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protein sequence of rna3085

>rna3085-protein ID=rna3085-protein|Name=rna3085|organism=Nannochloropsis gaditana|type=polypeptide|length=83bp
MTCERKERAKRRKGKGRRRRRKEKQKERLEIKMLCIQSIADFMSSLQRKR
HVDLKRHTNILLVTALACDQVGSTFEPVKRGVR
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mRNA from alignment at CM002460.1:679448..679699-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3085 ID=rna3085|Name=rna3085|organism=Nannochloropsis gaditana|type=mRNA|length=252bp|location=Sequence derived from alignment at CM002460.1:679448..679699- (Nannochloropsis gaditana)
ATGACTTGTGAACGGAAGGAAAGAGCGAAACGGAGGAAGGGTAAAGGAAG
GAGACGGAGGAGGAAGGAGAAGCAGAAGGAAAGGTTGGAAATCAAGATGC
TGTGTATCCAGTCTATTGCCGACTTCATGTCTTCATTGCAACGAAAAAGA
CACGTCGATCTTAAACGCCATACCAATATATTGCTCGTAACAGCATTGGC
ATGTGATCAGGTTGGATCGACCTTCGAGCCCGTTAAGCGCGGGGTACGGT
GA
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Coding sequence (CDS) from alignment at CM002460.1:679448..679699-

>rna3085 ID=rna3085|Name=rna3085|organism=Nannochloropsis gaditana|type=CDS|length=252bp|location=Sequence derived from alignment at CM002460.1:679448..679699- (Nannochloropsis gaditana)
ATGACTTGTGAACGGAAGGAAAGAGCGAAACGGAGGAAGGGTAAAGGAAG
GAGACGGAGGAGGAAGGAGAAGCAGAAGGAAAGGTTGGAAATCAAGATGC
TGTGTATCCAGTCTATTGCCGACTTCATGTCTTCATTGCAACGAAAAAGA
CACGTCGATCTTAAACGCCATACCAATATATTGCTCGTAACAGCATTGGC
ATGTGATCAGGTTGGATCGACCTTCGAGCCCGTTAAGCGCGGGGTACGGT
GA
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Synonyms
Publications