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Properties
| Property Name | Value |
|---|
| Product | membrane protein |
| Orig transcript id | gnl|cribi|Naga_100015g79.6375.mrna |
| Orig protein id | gnl|cribi|Naga_100015g79.6375 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:678033..679602 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3084 ID=rna3084|Name=rna3084|organism=Nannochloropsis gaditana|type=mRNA|length=3792bp
ATGCCCGGCGTCCCGCGCCCGCCTTGTCTCCCACGCAGGCCCCTGTTTGG
ATGCTGCATAGCCGTGTCTCTTCGCGAAAAGAGAATTCGTTTGGCTTGGG
GCCCGAGGAACGTGCCCGCCCCCGCCCTGCACGGCGAGCTCTCCATCCCT
TTCCGGAACCTGTCCGCCTTCCATGCCTACGGCCCTCTTGCGGAACTGAA
TGACTGCTACCTGCTCCTGCTCGCCGAGAGCAAACCCGTCGGCAAAGGGA
GCGGAAAGACAGCCCGTGCAGGAGGTCAAGCCCTCCCAGAGGATAGGCAC
CGGCTCTATGTCTTGCAGCTCGATCCGATGAGTACGGGCACCTCCATGCA
CCAACCAGAGGCCAGAGCCCGCCACGAGAACCAGGCGTCCCTTCGCGCAT
TATTCCACAGGGTGGAAGAACAGGGGTCGTCCCACTCGCTCGCGGCGTTT
CGGTTCTTCCCACACCCGAAAGATTGGGCACGTCCGGAGGTCACGAGCAT
GATCGCGCGCATCCACGAGGCCCAGGGAACAAACAGCGCGGCAGAGCTCT
TGACCGGAGTGCGAGAAGGCTTGCAAGAGGGAAGCGGCGCGGAGGGGCTC
GGCGAGGGCCGGGGGGGCGGCGAGGCAGTAGAGAAGAAGGCGTGGCTTCG
TCGGTCGACTCGGCGGAGCACCCGAGACTCGGCCAAGGCAGGCCTCTACG
AGCACCTGGGCGCGGGAGGAGGTCCTCTGGTAGGGGAAGAGGAAGCCCGG
TTGTTGTTCAAATTCCCGTTGCACCCCGAGGCGCCTGACCGGGTCGCTTT
GACGTCCTTAGACCGAGTGAGGCTCGAAGAAGGGGAGTTTCTGAATGATA
ACGTCATTGACTTCCATTTCAAGTGGCTCGTGCACTGCGGCGTTGGGTGT
GTAGAAGACGTTGGGCTGGCAGACGAGAAGCGGAAAGGGCTGCGAGACGT
GCATATTTTCTCGACGCATTTTTATTCAAAATTGACGGAAACATCCTCCA
TCACACGAGCAATAAAGCGGTCATCGCTCTACTTCAAAAGCGCCACGCAG
AAAAAGGGAAGCAAGGACAAAATGAAGGAGGATGGGTCCACGATGGGAAA
AGAGCAAATCGTGGCGACTGGAAAGACGCAGGGGACGGAGAGGGCGGGGG
AGAAGGATATTCACACCCCCATGTCGGAGGTTAGGGCGCCGAGGGATGAG
GATGACCGGGATGACATTGAGCTTTTGAAGAAGGCCGGGCCCAAGGGACG
GGTGGAAAAGGAAGCCGCCACTGAAGAGGGTTGGGACCCGTTACTAGCCT
TCTCCTTCTCCCCCGATTCGCCATCGCCCGTCACGAAAGCGCCAACTCGA
CAGGAGATACAGGCCAAGGAGCGCCAGCGCCGAGAGGAGGAAAAATACGA
GGCAGCGCACAGCCTGGTGCAGCGCTGGACGAAGAATGTGGACCTGTTCA
GTAAGAAAATGGTGCTTGTCCCTATCAACGAGGCCTTGCACTGGAGCCTG
GCCGTTCTCTGCAATCTTGATCAGGTTCAATCTCTTGTGGATCCCGCGAC
CGAGCCATTAACAGCTGATGACGAGGGGAAAGCTCCGATCGAGACGCCTG
TGCACAAAAAATCGAAACGCAAGCGCCTTCGCAAGTCGGCCACGATGGAA
GGGGAGAACGCGTCGTGGTTGAAGGAGGAACATTTGGATAGGTGGGGGGA
AGGAGAGGGAGGTGATCGCGTTGTGGACGTGGGAGTGCAAGAGAGTCAGG
AGCCAGGGGATCCGCCAGTGGTCGTAAGTCTTGGCCGAAAAAAGAAAAAA
TGGCTGTCGACAAGGCCACAGTCAGCCGCTGACTCAGGATCTGGGCTCTT
AGTGGAGGCGAGAGCGGCGGGAGGGCGACAGGGGGAACACGTCGTGGGGA
GGGAGAGCAAAGACCAGACAAAACATGGTGCGATGGATGTTGGTGAGCCT
TGGAGTGGGGATTCCTCTCAAAGCAAGGAGGAGAAGGAGGGCGATCGGTG
CCCTCAGGAAGAAGGGGATAGCCTGGACTTGACCATAGGCGACGTGCTGG
CCGCGGATGGACTCGGGGTGGGGAGTAAGGAATCGTCGCATGAAATGGAG
GAGAAGCCGGAGACAGGAGGAAAGAGTGCGAGATGGGAAGGAAGAAGGGG
CAGTGGCGAGGAACAGGGTTTGGATGGGGGACGTGATGGAAAAACCGACG
TGAAAGATGGCAGGAAAGATGTTGTGGACGTGGGAAGCAGGCCTTGCCTG
GTGTTCATGGATTCGTTGAGCGCGCACCGGGCGGATAAAATCCACACGGC
GCTCTTGAACTACCTGAAGGTGGAATGGAAGCGTCGAAAAGCACCAGGCG
ATGGACTTTCGCCTTTCTTGAGCAAGGAGACTTTCCCAGTCATCAAACCA
CGGGTGCCAACACAGGACAACAGCTGTGACTGCGGCGTTTTCATTTTGAA
GTACGGCGAGATGATGCTCGCAGACGTCCTTCCTACCCTAGCGCGTTGGA
CCAAGCGAGCTCTGGCATGTCGATTGCGGGATTTTATCAGGGCGGACGTC
TTCAGTCAAGAGGACGTTGACGGCCTGCGAAAAACGTTGCAAGCACGCTT
TCAAGAATTGGAGGTGAAGTATGGGGAGCAAGGAGAAAAGGGAGAAGAAA
CAGGAAAATTGATTAAGAAAGAGGAAATGATAACGGGCAAGGAAGAGGAA
CGGGAGATGGAGGAGCTCGGGGAGTTGGATATCAAGACAGGGGATGGGAA
AGATGCAAATGGCGGCGAGGATAGAGAAGAGAGTTATGATAATGGGCAGG
ATCATGCAAGTGTCGAGATGCAGTGGTCGCCAGAGCGATGCGTGGAAGCA
AAAGGAGAGGAGGGAGGGGTCGACGATGAGGAAGATGGGGATGACGATGA
GACAGTTGAGGATGCGTACGCACCAAGGCGCATTGACGCGAACCTGTCTA
CTACCGCCGAGCATCCTGCCTCGCCTCCTCGGTCGTCCCCCTCATCTTTG
TCGGGTACGCCTGTCATTTCGTCGGACACATGGTCAAACGAGAGAATGCT
GACGTCGAAGGAGGAGAGGAGCATTGGGAATGGCGCGGGCTCGCAGAATC
CCTCTCCTTCGTCCATCTCGTCACAACGTGCACGGATGGCTCCTTCTGCT
TCTGTAGCTGCCGCTGTCGATTATAATGAAGAAGGCAGTGTGACATTGGG
CACGGTCAAGATCTCTCCGGGCGAGGCGGAGTCTATGTCGGTCTTTCAAG
TGGACGGCGAGGACGTGAAGGATGAGGAGGTGGAAGCAGAGGAGAAAAAG
CTCCTTGACTTTCAAATTTTTGGGGCCAAATCACCGGACGAGCTGCGGAA
ATTGAAAAATATGAGGAAGAGGAGAAAAAGGAATGAGAAGAAGAGAGCGG
CCCGCATTGAGGCTGCGGCGTTACAATCACCCCTACAACGAGCGAAGGCT
CGAGCTGAACAAGGAACGCTGGAAGGCGTTCAAGGCAATGAACTGTGGAA
GATCCATGGTGACGATGAGGCTTTTGTCGATCTTTCCTCCTCTTTATCTG
CGAGGCATGAGGGGCCCAGTCACCTGTCAATTTACAAAATTCTGATATGT
TGGGAAAAGGTGCAATCTACATGTTATACGGATGGCAAGAGATGTAAGAT
AGTGCTTTCGGGGTTGGAATTTTTGAAGCATAAAAGTATGCGCGTGCGGG
AGTGTCCTACAAGGGGAAACGGAATCTCTCCACCTTCGAGACAGAAAAGC
TCAAATTGTACAGAAAAGATGTGTCCGGAAGCCACAATGTAA back to topprotein sequence of rna3084 >rna3084-protein ID=rna3084-protein|Name=rna3084|organism=Nannochloropsis gaditana|type=polypeptide|length=282bp
MSTALSILGVAGFMEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFY
DLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRIL
QHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNP
DWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYS
RHPNYAGEIVLHCGVLLLASGSYDRPVEWGLALLGPGFITTLLYGISLPM
VERKANIRWKDNTSYKTYMQKTPAIFPFPKWS back to topmRNA from alignment at CM002460.1:678033..679602+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3084 ID=rna3084|Name=rna3084|organism=Nannochloropsis gaditana|type=mRNA|length=1570bp|location=Sequence derived from alignment at CM002460.1:678033..679602+ (Nannochloropsis gaditana)
GTCGATCAGAGCTTGTGGTGACAAGAACAACCGCCTTCTCGTTCCTGATT
aatttcctccctgctcacATGCACATAGCAGACGCAAACACCGACTGCAG
AGCTCACTTTCCGCTTGTTGTGGTACAGTTGTGTCGCCATGTCGACGGTA
AgtgttcctttcctttttatATGGACAAATTTATTGCACTTCTTTGTTCC
AAGGGTAGCGCTGGTCCGAAGGCAGCGTATTATCAGTTTACTTTCCTCTG
AGTGGCGATCATAGTTTGCCACACACATTTCCATCTTAGTAGGTATGGAA
GGCTTGTACTTTGTTTTAACTCCACGTATTTTCTAACCGTAATACGCTGT
GCGGCCTTTCATGCTGAAAATGACTCCCCGTTGCCGTTCTACTGCAGGCG
CTCTCCATACTTGGAGTTGCTGGTTTCATGGAAGCTGTAGCTACGCCCTT
GGGGCTTTGGACACCAGCAACATTCTGTTTGGTTGTACAATGGCTCGCCT
TTATTCCTGCATACTTTTGGAGGACGGAGATGTTTTACGACCTGACAGGA
AGCCTCACGTTCCTCGCTACCATGTTCCTGAACCTGTATCACGGGCCTTG
GCCCCCACACCCACGGCAGCAAATGGCTTCTTTTTTCATTATGGTGTGGG
CATTCCGCCTAGGTTATTTCCTGTTCACCCGCATCTTGCAACATGGAAAA
GACTCGCGTTTTGATACAGTGAAACATGAGCCGTTGCGCTTTCTGCAATA
CTGGACCGTGCAAGGCCTGTGGGTTTTCCTGACTTGCTTGCCAGTGCTCA
TATGTAGCACGAAAAAGGATTCAAACATGCGAAACCCCGACTGGCCCGTG
CCGTCCGATTTGATAGGCATGCTGGTCTTCTCACTCGGCCTGGGCCTCGA
AATGCTGGCTGACTTCCAGAAGTTCCAGTGGCAAAACGACTGGCAACACC
GGGACGATTTCATCAACATAGGATTATGGCGGTACTCCCGGCATCCCAAT
TACGCGGGGGAGATAGTGCTGCACTGTGgggtccttctccttgcctcaGG
TTCGTATGATCGGCCGGTGGAATGGGGACTTGCACTCCTGGGGCCTGGCT
TTATCACCACCTTGCTGTACGGAATCAGCCTGCCCATGGTGGAGCGAAAG
GCAAACATCCGCTGGAAAGACAACACCTCCTACAAGACATACATGCAAAA
GACCCCGGCGATTTTCCCGTTTCCTAAATGGTCGTGAGTGGAGGATgtcg
aaagaggaagcgaaggcgTGCCCGGAGCGACCGGAGGGAGTCTTGGCGAG
AGGAACACAGACATGCATAGACACTGTCTAAAAACGTGAAGAGCACGAAA
ATAGTGAAAAATGAAGGGCAACAAGCTGTACATAAAAAATAGGCCATGGT
TGACCCAATTTGTAGTCACCGTACCCCGCGCTTAACGGGCTCGAAGGTCG
ATCCAACCTGATCACATGCCAATGCTGTTACGAGCAATATATTGGTATGG
CGTTTAAGATCGACGTGTCTTTTTCGTTGCAATGAAGACATGAAGTCGGC
AATAGACTGGATACACAGCA back to topCoding sequence (CDS) from alignment at CM002460.1:678033..679602+ >rna3084 ID=rna3084|Name=rna3084|organism=Nannochloropsis gaditana|type=CDS|length=1698bp|location=Sequence derived from alignment at CM002460.1:678033..679602+ (Nannochloropsis gaditana)
ATGTCGACGGCGCTCTCCATACTTGGAGTTGCTGGTTTCATGGAAGCTGT
AGCTACGCCCTTGGGGCTTTGGACACCAGCAACATTCTGTTTGGTTGTAC
AATGGCTCGCCTTTATTCCTGCATACTTTTGGAGGACGGAGATGTTTTAC
GACCTGACAGGAAGCCTCACGTTCCTCGCTACCATGTTCCTGAACCTGTA
TCACGGGCCTTGGCCCCCACACCCACGGCAGCAAATGGCTTCTTTTTTCA
TTATGGTGTGGGCATTCCGCCTAGGTTATTTCCTGTTCACCCGCATCTTG
CAACATGGAAAAGACTCGCGTTTTGATACAGTGAAACATGAGCCGTTGCG
CTTTCTGCAATACTGGACCGTGCAAGGCCTGTGGGTTTTCCTGACTTGCT
TGCCAGTGCTCATATGTAGCACGAAAAAGGATTCAAACATGCGAAACCCC
GACTGGCCCGTGCCGTCCGATTTGATAGGCATGCTGGTCTTCTCACTCGG
CCTGGGCCTCGAAATGCTGGCTGACTTCCAGAAGTTCCAGTGGCAAAACG
ACTGGCAACACCGGGACGATTTCATCAACATAGGATTATGGCGGTACTCC
CGGCATCCCAATTACGCGGGGGAGATAGTGCTGCACTGTGgggtccttct
ccttgcctcaGGTTCGTATGATCGGCCGGTGGAATGGGGACTTGCACTCC
TGGGGCCTGGCTTTATCACCACCTTGCTGTACGGAATCAGCCTGCCCATG
GTGGAGCGAAAGGCAAACATCCGCTGGAAAGACAACACCTCCTACAAGAC
ATACATGCAAAAGACCCCGGCGATTTTCCCGTTTCCTAAATGGTCGTGAA
TGTCGACGGCGCTCTCCATACTTGGAGTTGCTGGTTTCATGGAAGCTGTA
GCTACGCCCTTGGGGCTTTGGACACCAGCAACATTCTGTTTGGTTGTACA
ATGGCTCGCCTTTATTCCTGCATACTTTTGGAGGACGGAGATGTTTTACG
ACCTGACAGGAAGCCTCACGTTCCTCGCTACCATGTTCCTGAACCTGTAT
CACGGGCCTTGGCCCCCACACCCACGGCAGCAAATGGCTTCTTTTTTCAT
TATGGTGTGGGCATTCCGCCTAGGTTATTTCCTGTTCACCCGCATCTTGC
AACATGGAAAAGACTCGCGTTTTGATACAGTGAAACATGAGCCGTTGCGC
TTTCTGCAATACTGGACCGTGCAAGGCCTGTGGGTTTTCCTGACTTGCTT
GCCAGTGCTCATATGTAGCACGAAAAAGGATTCAAACATGCGAAACCCCG
ACTGGCCCGTGCCGTCCGATTTGATAGGCATGCTGGTCTTCTCACTCGGC
CTGGGCCTCGAAATGCTGGCTGACTTCCAGAAGTTCCAGTGGCAAAACGA
CTGGCAACACCGGGACGATTTCATCAACATAGGATTATGGCGGTACTCCC
GGCATCCCAATTACGCGGGGGAGATAGTGCTGCACTGTGgggtccttctc
cttgcctcaGGTTCGTATGATCGGCCGGTGGAATGGGGACTTGCACTCCT
GGGGCCTGGCTTTATCACCACCTTGCTGTACGGAATCAGCCTGCCCATGG
TGGAGCGAAAGGCAAACATCCGCTGGAAAGACAACACCTCCTACAAGACA
TACATGCAAAAGACCCCGGCGATTTTCCCGTTTCCTAAATGGTCGTGA back to top
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