EWM27559.1, cds3076 (CDS) Nannochloropsis gaditana

Overview
NameEWM27559.1
Unique Namecds3076
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:678171..678179 +
Alignment locationCM002460.1:678430..679269 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27559.1
Productmembrane protein
Orig transcript idgnl|cribi|Naga_100015g79.6375.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:678171..678179 +
CM002460.1supercontigCM002460.1:678430..679269 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010721DUF1295
Homology
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|585109826|gb|EWM27559.1| (membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 582.793 bits (1501), Expect = 0.000e+0
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
Query:    1 MSTALSILGVAGFMEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWGLALLGPGFITTLLYGISLPMVERKANIRWKDNTSYKTYMQKTPAIFPFPKWS 282
            MSTALSILGVAGFMEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWGLALLGPGFITTLLYGISLPMVERKANIRWKDNTSYKTYMQKTPAIFPFPKWS
Sbjct:    1 MSTALSILGVAGFMEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWGLALLGPGFITTLLYGISLPMVERKANIRWKDNTSYKTYMQKTPAIFPFPKWS 282          
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|931473210|gb|KPK54747.1| (hypothetical protein AMJ63_02175 [Myxococcales bacterium SG8_38_1])

HSP 1 Score: 196.823 bits (499), Expect = 4.203e-58
Identity = 108/255 (42.35%), Postives = 157/255 (61.57%), Query Frame = 0
Query:   27 ATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVP-SDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWGLALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFPFP 279
            A    +VQWLAF+PAY  +TE FYDL GSLT++A +   L     P + R  + +  + VWA RLG FLF RI   G DSRFD++K    RF   WT+QGLWVFLT    L   TK ++       P+  +DL+G+L+++LG  +E++AD QK   +        F++ GLW +SRHPNY GEIVL  G+ ++AS +  R  +W + ++ P F+  LL  +S +PM+E++A+ RW D+ +Y+ Y  +TP +FP P
Sbjct:   44 AALAFLVQWLAFVPAYAKQTERFYDLVGSLTYIAVVLFALLASG-PMNNRSALLALLVFVWAARLGSFLFRRIQAAGSDSRFDSIKPSAARFFVAWTLQGLWVFLTLSAALAAITKLEAA------PIGWADLVGLLIWALGFSIEVVADRQKSAHRK--ARPGKFVDSGLWAWSRHPNYFGEIVLWIGIAVIASSTL-RGWQW-VTMISPVFVAFLLMRVSGIPMLEKRADERWGDHKAYQKYKAETPVLFPRP 287          
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|1046354302|gb|ANV78654.1| (putative steroid reductase [uncultured Candidatus Thalassoarchaea euryarchaeote])

HSP 1 Score: 193.741 bits (491), Expect = 6.662e-57
Identity = 101/256 (39.45%), Postives = 157/256 (61.33%), Query Frame = 0
Query:   27 ATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPW--PPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYD--RPVEWGLALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
            A  C+ +QW+A++PA   +TE FYDLTG LT+L  +  +L+ G    PP  R+ + S  +++W+ RL  FL+ RI + GKD RFD +K  P+RFL  WT+QGLWVFLT + V++ +++ DS      W    D IG+ ++ LG  +E++AD QK  + ++ +++D +I+ GLW YSRHPNY GEI+L  G+ +     +     V W    + P FI  LL  +S +P+++R++  +W DN  Y+ Y   TP + P
Sbjct:   46 AVICIGIQWIAWVPASIGKTERFYDLTGGLTYLTVVGFSLWAGSQSEPPSLRELIVSLLVVIWSLRLSCFLYFRIHRTGKDGRFDQLKTSPIRFLVPWTIQGLWVFLTMIVVIVINSQADSAPALGIW----DGIGLSIWILGFAIEVVADNQKTVFNSEPKNKDKWIDSGLWSYSRHPNYLGEILLWTGIAIFGVSCFSGLEKVAW----ISPIFIYVLLTKVSGIPILDRRSLEKWGDNPEYQIYRDTTPPLIP 293          
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|941492194|gb|KQC04120.1| (hypothetical protein APR54_08960 [Candidatus Cloacimonas sp. SDB])

HSP 1 Score: 188.348 bits (477), Expect = 7.937e-55
Identity = 107/255 (41.96%), Postives = 150/255 (58.82%), Query Frame = 0
Query:   27 ATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
              F  ++QW+AFIPA+  +TE FYD+ GSLT++A + +++   P     R  +    +M+WA RLG FLF R+L+ GKD RFD +K    RFL  WT+Q LW+  T    LI  T   SN +  D      L G LV+ +G  LE +AD QK +++ D  +   FIN GLW  SRHPNY GEI+L  GVL++A      PV  G   +AL+ P F+  LL  IS +P++E++A+ +W     Y+TY Q TP + P
Sbjct:   43 VAFAFLIQWIAFIPAFLLQTERFYDIVGSLTYIALVIISVCLSP-IVDGRSALMLILVMIWAVRLGSFLFRRVLKAGKDGRFDEIKPHFFRFLTAWTLQALWITFTLSAALIVITT--SNRKELDLFA---LFGFLVWIIGFTLEAVADLQKSRFKTDPTNNGKFINTGLWSRSRHPNYFGEIMLWTGVLIIA-----LPVLKGWNWVALVSPVFVAILLTQISGIPILEKRADQKWGGQEDYETYKQNTPVLIP 286          
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|663530647|gb|AIF20627.1| (putative steroid reductase [uncultured marine group II/III euryarchaeote KM3_91_A10])

HSP 1 Score: 187.578 bits (475), Expect = 1.571e-54
Identity = 107/273 (39.19%), Postives = 157/273 (57.51%), Query Frame = 0
Query:   14 MEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHP--RQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPS----DLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYD--RPVEWGLALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
            +E    P  +W  A     VQWLA+IPA   +TE FYDLTG LT+LA +  +L+ G     P  R+ + S  + +WA RL  FLF RI + GKD RFD +K  P+RFL  WT+Q LWVFLT   V++ +++          P P     D IG++V+ +G G+E++AD QK  +    ++   +I+ GLW  SRHPNY GEI+L  G+ +     +D    V W    + P F+  LL  +S +P+++R++  +W DN  Y+ Y + TPA+FP
Sbjct:   35 VEVNGLPAVVWC-AIIAFAVQWLAWIPASISQTERFYDLTGGLTYLAVVAFSLWSGSQSEDPSTREWLISALVAIWAIRLSSFLFLRIHEAGKDGRFDQLKTSPVRFLVPWTLQALWVFLTLNVVVVINSQSG--------PAPPLGIWDGIGLMVWIMGFGIEVMADSQKTAFNAKQENEGRWIDEGLWSRSRHPNYLGEIMLWTGIAIFGVACFDGLEMVAW----ISPVFVYLLLTKVSGIPLLDRRSLAKWGDNPEYQNYRENTPALFP 294          
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|946953251|ref|WP_055874926.1| (DUF1295 domain-containing protein [Microbacterium sp. Root322] >gi|945446410|gb|KQV02579.1| hypothetical protein ASC55_09950 [Microbacterium sp. Root322])

HSP 1 Score: 187.963 bits (476), Expect = 1.644e-54
Identity = 105/250 (42.00%), Postives = 147/250 (58.80%), Query Frame = 0
Query:   33 VQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNP-DWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
            +Q +AFIPA   +TE F+DLTGSLTFL      +   P P   R  + +  +M+WA RLG FL  R+ + G D RFD +K  PLRFLQ W +QG WV LT     I     D+  R P  W     ++G++V+ +G+ +E++AD QK  ++ D Q+RD+FI  GLW  SRHPNY GEIV+  GV + A+     PV  G   +ALL P F+  LL  +S +P++E +A  +W D   Y  Y + TP++ P
Sbjct:   56 IQVIAFIPAMILQTERFFDLTGSLTFLVISAALVLLSPLP-DARSWILAAMVMLWAARLGSFLALRVHKAGSDGRFDEIKSSPLRFLQVWVIQGAWVSLTAAAAWIA-ISTDAGARAPIGW---LTVVGIIVWVIGMAIEIVADAQKSAFRADPQNRDEFIRTGLWSRSRHPNYFGEIVIWVGVFVTAA-----PVLAGWQWVALLSPLFVILLLTRVSGIPLLEARAEKKWGDRADYIAYRENTPSLIP 295          
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|516440778|ref|WP_017829690.1| (DUF1295 domain-containing protein [Microbacterium sp. UCD-TDU] >gi|602237124|gb|EYT60470.1| membrane protein [Microbacterium sp. UCD-TDU])

HSP 1 Score: 187.578 bits (475), Expect = 2.151e-54
Identity = 105/250 (42.00%), Postives = 147/250 (58.80%), Query Frame = 0
Query:   33 VQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNP-DWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
            +Q +AFIPA   +TE F+DLTGSLTFL      +   P P   R  + +  +M+WA RLG FL  R+ + G D RFD +K  PLRFLQ W +QG WV LT     I     D+  R P  W     ++G++V+ +G+ +E++AD QK  ++ D Q+RD+FI  GLW  SRHPNY GEIV+  GV + A+     PV  G   +ALL P F+  LL  +S +P++E +A  +W D   Y  Y + TP++ P
Sbjct:   56 IQVIAFIPAMILQTERFFDLTGSLTFLVISAALVLLSPLP-DARSWILAAMVMLWAARLGSFLALRVHKAGSDGRFDEIKGSPLRFLQVWVIQGAWVSLTAAAAWIA-ISTDAGARAPIGW---LTVVGIIVWVIGMAIEIIADAQKSAFRADPQNRDEFIRTGLWSRSRHPNYFGEIVIWVGVFVTAA-----PVLAGWQWVALLSPLFVILLLTRVSGIPLLEARAEKKWGDRADYIAYRENTPSLIP 295          
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|495522341|ref|WP_008246986.1| (DUF1295 domain-containing protein [Zhongshania aliphaticivorans] >gi|385280789|gb|EIF44709.1| hypothetical protein DOK_02671 [gamma proteobacterium BDW918] >gi|1004368827|gb|AMO67891.1| hypothetical protein AZF00_06055 [Zhongshania aliphaticivorans])

HSP 1 Score: 187.193 bits (474), Expect = 2.330e-54
Identity = 116/286 (40.56%), Postives = 162/286 (56.64%), Query Frame = 0
Query:    1 MSTALSILGVAGFMEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPH---PRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFPFP 279
            ++T L+  G  G +     P  L   A     VQWLAFIPAY ++TE +YDL GS T++  + L LY           R  + +  +++WA RLG FLF R+ Q GKD RFD +K    RFL  WT+QGLWVF+T +  L   T   S  R P   V   + G LV+ LG  LE++AD QK  +    ++   FINIGLWR+SRHPNY GEI+L CG+ L+A      PV  G   L+L+ P F+  LL  +S +P++E++++ +W  N  Y+ Y  +T  + P P
Sbjct:   17 IATGLAYAGGQGGLNYGPYP-ALLVCAAIAFSVQWLAFIPAYAFQTEHYYDLIGSSTYVIIVLLALYLSSGLGQGLDDRALLLTALVVIWAARLGPFLFRRVKQAGKDGRFDLIKVSIPRFLLTWTLQGLWVFVTLVAAL---TAMTSQHREPLGIVA--VFGALVWLLGFALEVVADAQKSAFNKQPENAGKFINIGLWRWSRHPNYFGEIMLWCGIALIAV-----PVLQGWQWLSLISPVFVIFLLTRVSGVPLLEKRSDEKWGGNADYERYKTETSVLIPLP 291          
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|655052434|ref|WP_028500959.1| (DUF1295 domain-containing protein [Microbacterium sp. URHA0036])

HSP 1 Score: 186.808 bits (473), Expect = 5.259e-54
Identity = 105/250 (42.00%), Postives = 145/250 (58.00%), Query Frame = 0
Query:   33 VQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNP-DWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
            +Q +AFIPA   +TE F+DLTGSLTF       +   P P   R  + +  +M+WA RLG FL  R+ + G D RFD +K  PLRFLQ W +QG WV LT     I     D+  R P  W     ++G++ ++LG+ +E++AD QK  ++ D  +RD+FI  GLW  SRHPNY GEIV+  GV L A+     PV  G   +ALL P F+  LL  +S +P++E +A  +W D   Y TY + TP + P
Sbjct:   56 IQVIAFIPAMILQTERFFDLTGSLTFFVISAALILLAPMP-DARSWILAAMVMLWAARLGSFLAIRVHKAGSDGRFDAIKGSPLRFLQVWMIQGAWVSLTAAAAWIA-ISTDAAARAPIGW---LTIVGIIAWALGMVIEIVADAQKSAFRADPHNRDEFIRTGLWSRSRHPNYFGEIVIWVGVFLTAA-----PVLVGWQWVALLSPVFVILLLTRVSGIPLLEARAETKWGDRADYVTYRESTPTLIP 295          
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|946944505|ref|WP_055866386.1| (DUF1295 domain-containing protein [Microbacterium sp. Root1433D1] >gi|945824245|gb|KQY78053.1| hypothetical protein ASD13_05200 [Microbacterium sp. Root1433D1])

HSP 1 Score: 186.422 bits (472), Expect = 5.316e-54
Identity = 105/250 (42.00%), Postives = 146/250 (58.40%), Query Frame = 0
Query:   33 VQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNP-DWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
            +Q +AFIPA   +TE F+DLTGSLTFL      +   P P   R  + +  +M+WA RLG FL  R+ + G D RFD +K  PLRFLQ W +QG WV LT     I     D+  R P  W     ++G++V+  G+ +E++AD QK  ++ D Q+RD+FI  GLW  SRHPNY GEIV+  GV + A+     PV  G   +ALL P F+  LL  +S +P++E +A  +W D   Y  Y + TP++ P
Sbjct:   56 IQVIAFIPAMILQTERFFDLTGSLTFLVISAALVLLSPLP-DARSWILAAMVMLWAARLGSFLALRVHKAGSDGRFDEIKGSPLRFLQVWVIQGAWVSLTAAAAWIA-ISTDAGARAPIGW---LTVVGIIVWVAGMAIEIVADAQKSAFRADPQNRDEFIRTGLWSRSRHPNYFGEIVIWVGVFVTAA-----PVLAGWQWVALLSPLFVILLLTRVSGIPLLEARAEKKWGDRADYIAYRENTPSLIP 295          
The following BLAST results are available for this feature:
BLAST of EWM27559.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109826|gb|EWM27559.1|0.000e+0100.00membrane protein [Nannochloropsis gaditana][more]
gi|931473210|gb|KPK54747.1|4.203e-5842.35hypothetical protein AMJ63_02175 [Myxococcales bac... [more]
gi|1046354302|gb|ANV78654.1|6.662e-5739.45putative steroid reductase [uncultured Candidatus ... [more]
gi|941492194|gb|KQC04120.1|7.937e-5541.96hypothetical protein APR54_08960 [Candidatus Cloac... [more]
gi|663530647|gb|AIF20627.1|1.571e-5439.19putative steroid reductase [uncultured marine grou... [more]
gi|946953251|ref|WP_055874926.1|1.644e-5442.00DUF1295 domain-containing protein [Microbacterium ... [more]
gi|516440778|ref|WP_017829690.1|2.151e-5442.00DUF1295 domain-containing protein [Microbacterium ... [more]
gi|495522341|ref|WP_008246986.1|2.330e-5440.56DUF1295 domain-containing protein [Zhongshania ali... [more]
gi|655052434|ref|WP_028500959.1|5.259e-5442.00DUF1295 domain-containing protein [Microbacterium ... [more]
gi|946944505|ref|WP_055866386.1|5.316e-5442.00DUF1295 domain-containing protein [Microbacterium ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3084rna3084Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications