EWM27559.1, cds3076 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|585109826|gb|EWM27559.1| (membrane protein [Nannochloropsis gaditana]) HSP 1 Score: 582.793 bits (1501), Expect = 0.000e+0 Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
Query: 1 MSTALSILGVAGFMEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWGLALLGPGFITTLLYGISLPMVERKANIRWKDNTSYKTYMQKTPAIFPFPKWS 282
MSTALSILGVAGFMEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWGLALLGPGFITTLLYGISLPMVERKANIRWKDNTSYKTYMQKTPAIFPFPKWS
Sbjct: 1 MSTALSILGVAGFMEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWGLALLGPGFITTLLYGISLPMVERKANIRWKDNTSYKTYMQKTPAIFPFPKWS 282
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|931473210|gb|KPK54747.1| (hypothetical protein AMJ63_02175 [Myxococcales bacterium SG8_38_1]) HSP 1 Score: 196.823 bits (499), Expect = 4.203e-58 Identity = 108/255 (42.35%), Postives = 157/255 (61.57%), Query Frame = 0
Query: 27 ATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVP-SDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWGLALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFPFP 279
A +VQWLAF+PAY +TE FYDL GSLT++A + L P + R + + + VWA RLG FLF RI G DSRFD++K RF WT+QGLWVFLT L TK ++ P+ +DL+G+L+++LG +E++AD QK + F++ GLW +SRHPNY GEIVL G+ ++AS + R +W + ++ P F+ LL +S +PM+E++A+ RW D+ +Y+ Y +TP +FP P
Sbjct: 44 AALAFLVQWLAFVPAYAKQTERFYDLVGSLTYIAVVLFALLASG-PMNNRSALLALLVFVWAARLGSFLFRRIQAAGSDSRFDSIKPSAARFFVAWTLQGLWVFLTLSAALAAITKLEAA------PIGWADLVGLLIWALGFSIEVVADRQKSAHRK--ARPGKFVDSGLWAWSRHPNYFGEIVLWIGIAVIASSTL-RGWQW-VTMISPVFVAFLLMRVSGIPMLEKRADERWGDHKAYQKYKAETPVLFPRP 287
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|1046354302|gb|ANV78654.1| (putative steroid reductase [uncultured Candidatus Thalassoarchaea euryarchaeote]) HSP 1 Score: 193.741 bits (491), Expect = 6.662e-57 Identity = 101/256 (39.45%), Postives = 157/256 (61.33%), Query Frame = 0
Query: 27 ATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPW--PPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYD--RPVEWGLALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
A C+ +QW+A++PA +TE FYDLTG LT+L + +L+ G PP R+ + S +++W+ RL FL+ RI + GKD RFD +K P+RFL WT+QGLWVFLT + V++ +++ DS W D IG+ ++ LG +E++AD QK + ++ +++D +I+ GLW YSRHPNY GEI+L G+ + + V W + P FI LL +S +P+++R++ +W DN Y+ Y TP + P
Sbjct: 46 AVICIGIQWIAWVPASIGKTERFYDLTGGLTYLTVVGFSLWAGSQSEPPSLRELIVSLLVVIWSLRLSCFLYFRIHRTGKDGRFDQLKTSPIRFLVPWTIQGLWVFLTMIVVIVINSQADSAPALGIW----DGIGLSIWILGFAIEVVADNQKTVFNSEPKNKDKWIDSGLWSYSRHPNYLGEILLWTGIAIFGVSCFSGLEKVAW----ISPIFIYVLLTKVSGIPILDRRSLEKWGDNPEYQIYRDTTPPLIP 293
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|941492194|gb|KQC04120.1| (hypothetical protein APR54_08960 [Candidatus Cloacimonas sp. SDB]) HSP 1 Score: 188.348 bits (477), Expect = 7.937e-55 Identity = 107/255 (41.96%), Postives = 150/255 (58.82%), Query Frame = 0
Query: 27 ATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
F ++QW+AFIPA+ +TE FYD+ GSLT++A + +++ P R + +M+WA RLG FLF R+L+ GKD RFD +K RFL WT+Q LW+ T LI T SN + D L G LV+ +G LE +AD QK +++ D + FIN GLW SRHPNY GEI+L GVL++A PV G +AL+ P F+ LL IS +P++E++A+ +W Y+TY Q TP + P
Sbjct: 43 VAFAFLIQWIAFIPAFLLQTERFYDIVGSLTYIALVIISVCLSP-IVDGRSALMLILVMIWAVRLGSFLFRRVLKAGKDGRFDEIKPHFFRFLTAWTLQALWITFTLSAALIVITT--SNRKELDLFA---LFGFLVWIIGFTLEAVADLQKSRFKTDPTNNGKFINTGLWSRSRHPNYFGEIMLWTGVLIIA-----LPVLKGWNWVALVSPVFVAILLTQISGIPILEKRADQKWGGQEDYETYKQNTPVLIP 286
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|663530647|gb|AIF20627.1| (putative steroid reductase [uncultured marine group II/III euryarchaeote KM3_91_A10]) HSP 1 Score: 187.578 bits (475), Expect = 1.571e-54 Identity = 107/273 (39.19%), Postives = 157/273 (57.51%), Query Frame = 0
Query: 14 MEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHP--RQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPS----DLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYD--RPVEWGLALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
+E P +W A VQWLA+IPA +TE FYDLTG LT+LA + +L+ G P R+ + S + +WA RL FLF RI + GKD RFD +K P+RFL WT+Q LWVFLT V++ +++ P P D IG++V+ +G G+E++AD QK + ++ +I+ GLW SRHPNY GEI+L G+ + +D V W + P F+ LL +S +P+++R++ +W DN Y+ Y + TPA+FP
Sbjct: 35 VEVNGLPAVVWC-AIIAFAVQWLAWIPASISQTERFYDLTGGLTYLAVVAFSLWSGSQSEDPSTREWLISALVAIWAIRLSSFLFLRIHEAGKDGRFDQLKTSPVRFLVPWTLQALWVFLTLNVVVVINSQSG--------PAPPLGIWDGIGLMVWIMGFGIEVMADSQKTAFNAKQENEGRWIDEGLWSRSRHPNYLGEIMLWTGIAIFGVACFDGLEMVAW----ISPVFVYLLLTKVSGIPLLDRRSLAKWGDNPEYQNYRENTPALFP 294
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|946953251|ref|WP_055874926.1| (DUF1295 domain-containing protein [Microbacterium sp. Root322] >gi|945446410|gb|KQV02579.1| hypothetical protein ASC55_09950 [Microbacterium sp. Root322]) HSP 1 Score: 187.963 bits (476), Expect = 1.644e-54 Identity = 105/250 (42.00%), Postives = 147/250 (58.80%), Query Frame = 0
Query: 33 VQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNP-DWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
+Q +AFIPA +TE F+DLTGSLTFL + P P R + + +M+WA RLG FL R+ + G D RFD +K PLRFLQ W +QG WV LT I D+ R P W ++G++V+ +G+ +E++AD QK ++ D Q+RD+FI GLW SRHPNY GEIV+ GV + A+ PV G +ALL P F+ LL +S +P++E +A +W D Y Y + TP++ P
Sbjct: 56 IQVIAFIPAMILQTERFFDLTGSLTFLVISAALVLLSPLP-DARSWILAAMVMLWAARLGSFLALRVHKAGSDGRFDEIKSSPLRFLQVWVIQGAWVSLTAAAAWIA-ISTDAGARAPIGW---LTVVGIIVWVIGMAIEIVADAQKSAFRADPQNRDEFIRTGLWSRSRHPNYFGEIVIWVGVFVTAA-----PVLAGWQWVALLSPLFVILLLTRVSGIPLLEARAEKKWGDRADYIAYRENTPSLIP 295
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|516440778|ref|WP_017829690.1| (DUF1295 domain-containing protein [Microbacterium sp. UCD-TDU] >gi|602237124|gb|EYT60470.1| membrane protein [Microbacterium sp. UCD-TDU]) HSP 1 Score: 187.578 bits (475), Expect = 2.151e-54 Identity = 105/250 (42.00%), Postives = 147/250 (58.80%), Query Frame = 0
Query: 33 VQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNP-DWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
+Q +AFIPA +TE F+DLTGSLTFL + P P R + + +M+WA RLG FL R+ + G D RFD +K PLRFLQ W +QG WV LT I D+ R P W ++G++V+ +G+ +E++AD QK ++ D Q+RD+FI GLW SRHPNY GEIV+ GV + A+ PV G +ALL P F+ LL +S +P++E +A +W D Y Y + TP++ P
Sbjct: 56 IQVIAFIPAMILQTERFFDLTGSLTFLVISAALVLLSPLP-DARSWILAAMVMLWAARLGSFLALRVHKAGSDGRFDEIKGSPLRFLQVWVIQGAWVSLTAAAAWIA-ISTDAGARAPIGW---LTVVGIIVWVIGMAIEIIADAQKSAFRADPQNRDEFIRTGLWSRSRHPNYFGEIVIWVGVFVTAA-----PVLAGWQWVALLSPLFVILLLTRVSGIPLLEARAEKKWGDRADYIAYRENTPSLIP 295
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|495522341|ref|WP_008246986.1| (DUF1295 domain-containing protein [Zhongshania aliphaticivorans] >gi|385280789|gb|EIF44709.1| hypothetical protein DOK_02671 [gamma proteobacterium BDW918] >gi|1004368827|gb|AMO67891.1| hypothetical protein AZF00_06055 [Zhongshania aliphaticivorans]) HSP 1 Score: 187.193 bits (474), Expect = 2.330e-54 Identity = 116/286 (40.56%), Postives = 162/286 (56.64%), Query Frame = 0
Query: 1 MSTALSILGVAGFMEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPH---PRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFPFP 279
++T L+ G G + P L A VQWLAFIPAY ++TE +YDL GS T++ + L LY R + + +++WA RLG FLF R+ Q GKD RFD +K RFL WT+QGLWVF+T + L T S R P V + G LV+ LG LE++AD QK + ++ FINIGLWR+SRHPNY GEI+L CG+ L+A PV G L+L+ P F+ LL +S +P++E++++ +W N Y+ Y +T + P P
Sbjct: 17 IATGLAYAGGQGGLNYGPYP-ALLVCAAIAFSVQWLAFIPAYAFQTEHYYDLIGSSTYVIIVLLALYLSSGLGQGLDDRALLLTALVVIWAARLGPFLFRRVKQAGKDGRFDLIKVSIPRFLLTWTLQGLWVFVTLVAAL---TAMTSQHREPLGIVA--VFGALVWLLGFALEVVADAQKSAFNKQPENAGKFINIGLWRWSRHPNYFGEIMLWCGIALIAV-----PVLQGWQWLSLISPVFVIFLLTRVSGVPLLEKRSDEKWGGNADYERYKTETSVLIPLP 291
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|655052434|ref|WP_028500959.1| (DUF1295 domain-containing protein [Microbacterium sp. URHA0036]) HSP 1 Score: 186.808 bits (473), Expect = 5.259e-54 Identity = 105/250 (42.00%), Postives = 145/250 (58.00%), Query Frame = 0
Query: 33 VQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNP-DWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
+Q +AFIPA +TE F+DLTGSLTF + P P R + + +M+WA RLG FL R+ + G D RFD +K PLRFLQ W +QG WV LT I D+ R P W ++G++ ++LG+ +E++AD QK ++ D +RD+FI GLW SRHPNY GEIV+ GV L A+ PV G +ALL P F+ LL +S +P++E +A +W D Y TY + TP + P
Sbjct: 56 IQVIAFIPAMILQTERFFDLTGSLTFFVISAALILLAPMP-DARSWILAAMVMLWAARLGSFLAIRVHKAGSDGRFDAIKGSPLRFLQVWMIQGAWVSLTAAAAWIA-ISTDAAARAPIGW---LTIVGIIAWALGMVIEIVADAQKSAFRADPHNRDEFIRTGLWSRSRHPNYFGEIVIWVGVFLTAA-----PVLVGWQWVALLSPVFVILLLTRVSGIPLLEARAETKWGDRADYVTYRESTPTLIP 295
BLAST of EWM27559.1 vs. NCBI_GenBank
Match: gi|946944505|ref|WP_055866386.1| (DUF1295 domain-containing protein [Microbacterium sp. Root1433D1] >gi|945824245|gb|KQY78053.1| hypothetical protein ASD13_05200 [Microbacterium sp. Root1433D1]) HSP 1 Score: 186.422 bits (472), Expect = 5.316e-54 Identity = 105/250 (42.00%), Postives = 146/250 (58.40%), Query Frame = 0
Query: 33 VQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNP-DWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWG---LALLGPGFITTLLYGIS-LPMVERKANIRWKDNTSYKTYMQKTPAIFP 277
+Q +AFIPA +TE F+DLTGSLTFL + P P R + + +M+WA RLG FL R+ + G D RFD +K PLRFLQ W +QG WV LT I D+ R P W ++G++V+ G+ +E++AD QK ++ D Q+RD+FI GLW SRHPNY GEIV+ GV + A+ PV G +ALL P F+ LL +S +P++E +A +W D Y Y + TP++ P
Sbjct: 56 IQVIAFIPAMILQTERFFDLTGSLTFLVISAALVLLSPLP-DARSWILAAMVMLWAARLGSFLALRVHKAGSDGRFDEIKGSPLRFLQVWVIQGAWVSLTAAAAWIA-ISTDAGARAPIGW---LTVVGIIVWVAGMAIEIVADAQKSAFRADPQNRDEFIRTGLWSRSRHPNYFGEIVIWVGVFVTAA-----PVLAGWQWVALLSPLFVILLLTRVSGIPLLEARAEKKWGDRADYIAYRENTPSLIP 295 The following BLAST results are available for this feature:
BLAST of EWM27559.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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