rna3082, rna3082 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3082
Unique Name	rna3082
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1810
Alignment location	CM002460.1:670402..672108 +

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent rna helicase ddx24
Orig transcript id	gnl\|cribi\|Naga_100015g81.6346.mrna
Orig protein id	gnl\|cribi\|Naga_100015g81.6346
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:670402..672108 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g81	gene2960	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3082	rna3082-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27530.1	cds3074	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:670402..672108+
coding sequence from alignment at CM002460.1:670402..672108+

mRNA sequence

>rna3082 ID=rna3082|Name=rna3082|organism=Nannochloropsis gaditana|type=mRNA|length=1810bp
AGCACTTGCAAAGCTGATGATTGGTTGTCCTTCGAGAAACGACGTCCACA
CCAGTTTGTCACTCCATGGGCGTACGCATGCCATATTTGATGCAAGGGCG
GAGAGGGAGGGAGAGATACTCGTCTCCTCTTGCGGAAGGCGATTACTACG
TGCGTCACTTACATAGCACGTACCGCATTCAATTTTGATCGAATCACGGT
CACTAACCACTGTGTGTCTCATGCAATTAGACTCCGAATCTTGGTGCGCA
GTGAGTTATGGCGGAAGGCGGTCTTTTGCCCTGGCGCCGTCAGCGTCACG
ATGGTACAAAGTATCAAGACTTTGAGGAAATGCTCAAGCCGTTGCCTCCA
CCTCCTGAGGGGCTGATGTGGCGGAAGACGCGTGTCTCGGTGGAAGACGA
CGGGAGTCCGGTTGGTTTCGAAATGGATTTAGGGTTTCCTGTCGAAGGCG
AGGGAAAAATTGCTGCGGGTCACAGGGTTGGCAACAATGCAGCCGACCAT
GACCGAGGAAAGAATGCTGAAGTAGTTGAAGTACTTGATGGGGCTCAAGG
TCAGGGCGTCAGGACACGCTACGCGACCCGTTGGGAGCTGGTGGAAAAGA
CAATGAAGGCCAAGGTCGCGGATGCGGAGGAAGGAGGAGGAGCGGATGGA
GGGGAAAATGCGGTGGGGCAAGAGATGGAGGAGGCAGGTCTCGGAGAGGA
TGAGGTTGAGGGGGCCACGGCACCTGCTTTTCTGACGCACGTTGTACTGC
CGACGGACACAATGGCGGGGCTTCGTCTACGTTACAAGGTGACTGCGGCT
GAGCTTCGGATGTTCAACGACTTCTGCGGGGAGCAATTCCACATGTTGCA
GACCCTGCAGATCCCGCTCAAACGCGACTCAGCGGGCCACGTCCTCAAAC
ATCGGCAGCGCCCTACCAGGGCCGTCCTGCGTCAGCAGTTCATCAACGCC
ACGCGATGCACGGATGAGGAAGAGATCACTTACTACCTGGACGCGGCCGA
CTGGAGGCTGGAGGCTGCCGTCGCCGAGCACAGGGAGGACCGGGCGTGGG
AGGCGGCACACTTGGCGCGCATGGAGAAAGTGATTTCTCTCCCCAACCCG
CCTGTAAAGACAGCGCCCAAGCCTCACTTGACGTCGTCCGTCAGTTCGGG
ACCGCGCCTGGGCCTTGAACATGCATCGATCCCCCCCCCTCGTACGCCTC
TTTCTTTCGGGCGCCGCCAGGGGCCCGGCAAGGCAGGCGGACACGGAAAG
GGTTGTGGTCGTCGTGGAGCCTGTCCCGGGGAGGGAGGAAGGCGAAAGCC
GTGTATGACATGGACTCCTTCGTCGCGGAAGACTATGTTATCTTGTCAGG
GGCAGACCAGGAGGGTGAAAGCGGGGGGGGGAGGAAGGCTCGCCGACTGG
GAGCGCCGCCTTGCTGGGGCAGGCCCTGGAGGCCGCTGGGAAGAGGGAGC
GAGCCATTGACGAGGAGCACGCGCTTACACCTTTGTTGGCGCGCGCGGCG
ATTCGAACGTGAGAACAAGCTTGTATATACGTTTGAATGGTCAGGGATGC
ATGTATCGGGTCGCAGGGAAAAGAGGGAAAAGACCGAGCTTGACGAAGCG
CTGTAGCGGAGGTGTATAGAGGAAGGTTGCAAATATGTCTTGGCTGGTTG
ATCGTAACGTTGAAGAAACATCAAGATATTTGCCATCAATAGACAGGCCT
ACACGTAGTGACGATTTAGCATCATGAAGAGGCTGGACGCCTAACGGCGC
GCAACCAGAGCTCATCTTGTTCTGCAGTTGGTTTTTTCGTCCCGTCATTG
ATTTGCGGAG

protein sequence of rna3082

>rna3082-protein ID=rna3082-protein|Name=rna3082|organism=Nannochloropsis gaditana|type=polypeptide|length=526bp
EKEEEEEDLLEPAEVPTRSLEDVVKEARRLGLTGLHGLEEEDKERAGGES
STEGDPEGGRGEEDDGLDGVESGVGGQRRRAQKKRAGEGEEPEVDEPGEG
GAGGGASDRAVRLRPLPPPVTRQTLIFSATLIMPEETRGKMGGKKARGPK
KGKGPGDVIERIMRDVGMRGKPAVLDLTSGTGESRESGNPASSHSEGQLA
TTPTFAASLAPSGTPSRPGNTVALPAGLKLCHVKSVGAHKDAYLYYFLRR
HPGRTIVFTNSIDQTRRLAQLLSLLRLPARALHAKMQQRARLKSLDCFRA
QRQAVLVATDVAARGLDIPLVEHVIHYDMPRSLEVFVHRAGRTARANREG
LSFSMVAPRDEKFHDEVCRALFASSPSQRPEHPKEASGGSGAGMLPFPVD
LQELNATRERVHLAGKIVGHEQETGRQQATQSWFLKRAREADLDLDEELL
NEKEHGTEKERQRSRQMEMDRKRLNELLSQPMVQQRRKFINVADSLQALA
QTEECKDAIKAVSQSARPKIRKRTGL

mRNA from alignment at CM002460.1:670402..672108+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3082 ID=rna3082|Name=rna3082|organism=Nannochloropsis gaditana|type=mRNA|length=1707bp|location=Sequence derived from alignment at CM002460.1:670402..672108+ (Nannochloropsis gaditana)
gagaaggaggaggaagaggaagacctgCTTGAGCCTGCGGAGGTGCCGAC
GAGATCGCTGGAGGACGTtgtgaaggaggcaaggaggctgGGCCTGACAG
GCCTGCATGgtttggaagaggaagacaaagagcgagcagggggggagagt
AGTACTGAGGGCGAtcccgagggaggaagaggagaagaagacgatggGTT
GGATGGTGTGGAGAGCGGCGTGGGAGGACAGAGGCGCCGGGCCCAAAAGA
AgcgcgcgggggagggggaggagccagaGGTAGATGAGCctggtgaggga
ggcgcgggaggaggagcgagcgaCAGGGCCGTCCGGCTtcgccccctgcc
tcccccggTGACGCGACAGACATTGATCTTCAGTGCCACCTTGATCATGC
CAGAGGAAACGCGGGGGAAAatgggcgggaagaaagcgcGTGGCCCcaag
aagggcaaggggcCGGGCGATGTGATCGAAAGGATCATGCGAGACGTAGG
CATGCGTGGGAAACCCGCCGTCCTTGACCTCACCAGCGGCACCGGCGAGT
CAAGGGAAAGTGGCAATCCAGCATCTTCGCATTCGGAGGGCCAGCTGGCC
ACTACACCCACCTTTGCcgcttccctcgctccctctggCACGCCGTCACG
GCCTGGCAACACCGTGGCTCTCCCTGCGGGCTTGAAGCTTTGCCACGTCA
AAAGCGTGGGCGCGCACAAGGACGCGTACCTGTACtacttcctccgccgt
cacccCGGTCGTACCATCGTCTTCACCAACAGCATCGACCAGACCCGCCG
CCTCGCTcagcttctctcccttctcaggctccccgcccgcgccctccacg
ccaAAATGCAGCAGCGGGCCCGCCTGAAGAGCCTTGACTGCTTCCGAGCC
CAGAGGCAGGCAGTGCTGGTGGCCACTGACGTGGCTGCTCGGGGGCTGGA
TATTCCCCTTGTCGAACACGTCATTCACTACGATATGCCCCGCTCCCTGG
AGGTCTTTGTGCACCGCGCCGGTCGTACTGCGCGCGCGAATCGGGAGGGT
TTGAGCTTCTCCATGGTCGCCCCCAGGGACGAGAAATTTCATGACGAGGT
CTGTCGGGCCCTCTTCGCTTCCAGTCCGAGCCAGAGGCCGGAACACCCCA
AGGAGGCAAGCGGAGGCTCCGGCGCGGGCATGCTCCCGTTTCCGGTGGAC
CTTCAGGAATTGAATGCAACGCGTGAACGGGTCCACCTGGCGGGCAAGAT
AGTCGGGCACGAGCAAGAGACTGGGCGGCAGCAGGCCACCCAGTCCTGGT
TCTTGAAGCGGGCGAGAGAAGCGGATTTGGATCTGGACGAGGAGCTTCTG
AACGAGAAAGAGCACGGgacagagaaagaaaggcagcGATCCCGGCAGAT
GGAGATGGATCGGAAGCGCCTGAACGAGTTGTTGTCGCAGCCAATGGTGC
AGCAACGGAGGAAATTCATCAATGTCGCGGACAGCctgcaggccctggcc
caGACGGAAGAGTGCAAGGATGCGATAAAGGCCGTCTCACAGTCAGCACG
CCCGAAAATAAGGAAAAGGACTGGATtgtgagaaagggaggagaaaattt
TGACATAAAAAGGATGAACACATCTTCGTCCAGACGACTTTACCTGAGCC
AGAATGCAAATTATGGGAGAGAAGAGTGCAATGAATTTGCCGTGGATTTT
TTGAGGG

Coding sequence (CDS) from alignment at CM002460.1:670402..672108+

>rna3082 ID=rna3082|Name=rna3082|organism=Nannochloropsis gaditana|type=CDS|length=1581bp|location=Sequence derived from alignment at CM002460.1:670402..672108+ (Nannochloropsis gaditana)
gagaaggaggaggaagaggaagacctgCTTGAGCCTGCGGAGGTGCCGAC
GAGATCGCTGGAGGACGTtgtgaaggaggcaaggaggctgGGCCTGACAG
GCCTGCATGgtttggaagaggaagacaaagagcgagcagggggggagagt
AGTACTGAGGGCGAtcccgagggaggaagaggagaagaagacgatggGTT
GGATGGTGTGGAGAGCGGCGTGGGAGGACAGAGGCGCCGGGCCCAAAAGA
AgcgcgcgggggagggggaggagccagaGGTAGATGAGCctggtgaggga
ggcgcgggaggaggagcgagcgaCAGGGCCGTCCGGCTtcgccccctgcc
tcccccggTGACGCGACAGACATTGATCTTCAGTGCCACCTTGATCATGC
CAGAGGAAACGCGGGGGAAAatgggcgggaagaaagcgcGTGGCCCcaag
aagggcaaggggcCGGGCGATGTGATCGAAAGGATCATGCGAGACGTAGG
CATGCGTGGGAAACCCGCCGTCCTTGACCTCACCAGCGGCACCGGCGAGT
CAAGGGAAAGTGGCAATCCAGCATCTTCGCATTCGGAGGGCCAGCTGGCC
ACTACACCCACCTTTGCcgcttccctcgctccctctggCACGCCGTCACG
GCCTGGCAACACCGTGGCTCTCCCTGCGGGCTTGAAGCTTTGCCACGTCA
AAAGCGTGGGCGCGCACAAGGACGCGTACCTGTACtacttcctccgccgt
cacccCGGTCGTACCATCGTCTTCACCAACAGCATCGACCAGACCCGCCG
CCTCGCTcagcttctctcccttctcaggctccccgcccgcgccctccacg
ccaAAATGCAGCAGCGGGCCCGCCTGAAGAGCCTTGACTGCTTCCGAGCC
CAGAGGCAGGCAGTGCTGGTGGCCACTGACGTGGCTGCTCGGGGGCTGGA
TATTCCCCTTGTCGAACACGTCATTCACTACGATATGCCCCGCTCCCTGG
AGGTCTTTGTGCACCGCGCCGGTCGTACTGCGCGCGCGAATCGGGAGGGT
TTGAGCTTCTCCATGGTCGCCCCCAGGGACGAGAAATTTCATGACGAGGT
CTGTCGGGCCCTCTTCGCTTCCAGTCCGAGCCAGAGGCCGGAACACCCCA
AGGAGGCAAGCGGAGGCTCCGGCGCGGGCATGCTCCCGTTTCCGGTGGAC
CTTCAGGAATTGAATGCAACGCGTGAACGGGTCCACCTGGCGGGCAAGAT
AGTCGGGCACGAGCAAGAGACTGGGCGGCAGCAGGCCACCCAGTCCTGGT
TCTTGAAGCGGGCGAGAGAAGCGGATTTGGATCTGGACGAGGAGCTTCTG
AACGAGAAAGAGCACGGgacagagaaagaaaggcagcGATCCCGGCAGAT
GGAGATGGATCGGAAGCGCCTGAACGAGTTGTTGTCGCAGCCAATGGTGC
AGCAACGGAGGAAATTCATCAATGTCGCGGACAGCctgcaggccctggcc
caGACGGAAGAGTGCAAGGATGCGATAAAGGCCGTCTCACAGTCAGCACG
CCCGAAAATAAGGAAAAGGACTGGATtgtga

Synonyms

Publications