rna3077, rna3077 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3077
Unique Name	rna3077
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1524
Alignment location	CM002460.1:657468..659029 -

Link to JBrowse

Properties


Property Name	Value
Product	dna repair protein rad51
Orig transcript id	gnl\|cribi\|Naga_100069g17.5334.mrna
Orig protein id	gnl\|cribi\|Naga_100069g17.5334
Gene	Rad51A
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:657468..659029 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Rad51A	gene2955	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3077	rna3077-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27615.1	cds3069	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:657468..659029-
coding sequence from alignment at CM002460.1:657468..659029-

mRNA sequence

>rna3077 ID=rna3077|Name=rna3077|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp
ATGCCGGCCTTCCTCCCAGAATGTCCCATCACGAACGCCGATGCCCTCTG
CCAAGTTTTGCGAGGTATGATGTCTGAAGCCTTGCAAGAAGGGGGCCAAA
GGTTGGTTGATGCCGCCACGCAGGACTTTCCTGCGTTGATCGGCGACTAT
TTAGGAACGGAGGCAGTATTTGTCTCGCCTTCCCAAAGCTCTGTCGGCGC
AGACCTCATTACAGGATTTGATAAAAACAAATGTATCGCTACGAGGCGCC
ATTTAAACCTACATAGATTGCGCAAAGCACTTCAAGACAACATACTCGTG
GATATTGGCGCGTTGCAAGAGGACTACGCCTGTGGTGGGACAGCTCGAGG
TCTATGGAAGTTTCAAGTGGAGACAACCGAAAAAGGCCTTGCCGTAAATC
GACGCAAGCGATCCCTTCCGATGGATTTGCTACGAATTCGTGAACTCCAA
TTGCAGGCGATGTTGCGTTTCGTGATGGGTACAATGGGTCTTCTGGGCAC
CAGGCGACCCTCAGCTTCCTCCTGCATTCGCCCTCCCTTGCCTACTTCCC
TGCTCAAGGACGTGCATCACTTCCTGGCATACCTCCAGCTGCGTCAAACC
TTTGCCCTAGGCGCTGAAGGAATGAGGGGGTTCCGGCAAGCCGGAGGCGA
TCCTCTCCTGCATCCAAACAAGGGCACACCCCATAACGCCCCTGTCGGGC
GCGGCGTGTCAACGGAAACCCCCGATCAAGACAGGCGGGCCGAGAGGGCT
CGCCCCCACACTTCTGGCTACTGCATGGGCGATATGGGGGGCGGGGCGCA
AGAGGGGCTGGAGCAAGACGTGGATGGAGAGGAGGCGTGCCCCCACGGCA
TGCAGGCAACGCGCGTGCTTGACTCCAATTTTCACGAGTTCCTGGCCGCA
GCTTTCCTTAAACCCTTTCGCGCCAGCCACCCTCAGGACATACTGGCCCT
CTACACCTCGTTGGAGTGCGAGGAACTGCTGTCGGCGGATTTTTTGGCCG
AAGCAGCAGCAGGGGCAGCGGCTGCCACCACCAGGAGCGTGGCCAAAGGG
GTCTCACCCAAGCCCAAGGGTCCTGTGTTTCGGTGCCTCCGTCGCGACAA
AGCGGCAGCTTCTGGCTTTGTCTCCGCCTACAACAAGAGGCGGGAGGTTC
CAGTCGATAGGACGAAAGCAGCCGCCACGATGCCCGTGGGACCTGCGAAG
AGCATGATTTCCGGCGAGGCGCCTTCACGGCCGCCCACGCCTCCCCCCTC
CTCTCCCTCCGGCAGCAGTGTCCTGCAACAGGCCATGCGGGAGAGTCTAC
GGCCTCGCCCCAGCCACTACTTGTCGCGGATCAACAGCTTCCACAAGCCC
AACCAACTGTCACGGCGGCCCCTCCTCTCTCGGCAGCAGCAGCAGCACTC
CGCCCCCACGCTCCCCGGGCTTGCGGCACGCACGTTCCTGGGTGGGAAAC
GAAGAGGGTATCTGCATCCACCGCAACTCCGTTATTTCTTGTCTAGCAAC
GAGAGGCCTCCCGCGATGGGCTAG

protein sequence of rna3077

>rna3077-protein ID=rna3077-protein|Name=rna3077|organism=Nannochloropsis gaditana|type=polypeptide|length=375bp
MLPSFLFSIRSHSNDNRNSTSGGKLEAYSIMAAAVAEMQQHATIEQTSGV
GEHEVVVNFRHITELEHHGVNRTDLTKLMEAGYCTVESITHATLRKLTDI
KGISDQKAQKIKEIAYKLVPMGFLTAAQQLETRKDLIQLSTGSKDLDALL
GGGVETGSLTEIFGEFRTGKTQLCHTLCVTSQLPMDQGGGEGKAMYIDTE
GTFRPQRLVAIAERFGLDVDTVLDNVAFARAHNSEQQMDLLKMASAMMSE
DRYALVVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMSEEFGVAV
VLTNQVVANPDGMSFAKDQTKPIGGNIIAHASHTRLRLRKGRGENRICQI
YDSPTLPEAETQFSIGASGIEDAKD

mRNA from alignment at CM002460.1:657468..659029-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3077 ID=rna3077|Name=rna3077|organism=Nannochloropsis gaditana|type=mRNA|length=1562bp|location=Sequence derived from alignment at CM002460.1:657468..659029- (Nannochloropsis gaditana)
CCATTTGAGTCCTTTTATGACTGCGTTCAATTGCCTGGCATCCTGATTGT
TTGTCACTCCTTAGGAGAGTGAGGTTCTGATGCTGCCATCATTTCTCTTC
AGCATTCGCTCACACTCAAACGACAACCGCAACAGTACATCCGGTGGTAA
ACTTGAAGCGTACTCTATCATGGCAGCAGCAGTGGCGGAAATGCAGCAGC
ATGCGACGATCGAGCAAACGTCTGGAGTAGGAGAGCACGAGGTACGTGGA
TTGTTTCTTGGGGTGAAGATAGAATGTGTTCAAATTCATCATCCGCGGTT
ATGAATCGCAAAATCATGCTAGGAAAAAGGGCGGCATCGTTTTTGGACTG
CATTTCGATGTAGGAATATTTGAACATTTACCATGCATACACGTTTCCTT
CTATCTTTCAGGTGGTGGTGAATTTTCGTCACATTACCGAGCTTGAGCAT
CACGGTGTGAATCGCACAGACCTTACAAAACTTATGGAAGCAGGGTATTG
TACAGTCGAATCCATTACTCATGCAACACTTCGCAAGCTCACGGACATCA
AAGGCATTTCTGACCAGAAAGCTCAAAAAATTAAGGAAATAGCTTACAAG
CTGGTTCCCATGGGTTTCTTGACGGCCGCACAACAGCTGGAGACTCGCAA
AGATCTGATACAATTGTCAACAGGATCGAAGGATCTTGACGCTCTCCTAG
GCGGAGGAGTGGAGACAGGGTCATTGACAGAAATTTTTGGCGAGTTTCGC
ACAGGAAAGACGCAGCTTTGCCATACCCTTTGTGTGACGAGTCAGCTTCC
CATGGACCAAGGCGGGGGAGAAGGAAAAGCAATGTACATCGACACCGAGG
GGACTTTTCGCCCACAGCGCTTGGTGGCCATTGCGGAGCGATTTGGATTA
GATGTAGATACCGTCTTGGACAACGTGGCTTTCGCTCGCGCCCACAATTC
AGAGCAGCAAATGGATCTTTTGAAAATGGCGTCGGCGATGATGTCAGAAG
ATCGCTACGCTCTGGTTGTGGTGGACTCGGCTACGGCTCTGTTTCGCACG
GACTACTGCGGGCGAGGGGAGCTATCAGAGCGGCAAATGCAGCTGGCGCA
ATTTTTGCGACAGTTGACAAGAATGTCCGAGGAGTTTGGCGTTGCAGTCG
TGCTGACAAACCAGGTGGTGGCAAATCCTGATGGCATGAGCTTTGCAAAA
GACCAAACAAAGCCAATCGGAGGTAACATTATCGCTCACGCGTCACATAC
ACGCCTGCGCTTAAGAAAAGGCAGGGGAGAAAATCGAATTTGTCAGATTT
ACGATTCGCCAACCTTACCGGAAGCTGAGACTCAATTCTCTATCGGGGCA
TCGGGTATCGAGGATGCAAAGGACTAGGAGACAGGGACAGAGAGGAAATG
ATAGCTTGAGCTTGAAACGAAAGAATCAAGGACGGTTCTTGAGCAGGCAC
AGTGAGGTTTGTACAGGAGCCAATCGACCATGAAGTGAAGTATGTTTCTG
GAGGGTCTGGAATAAATTAATAGAGAATCATCTTTGAAGGCCCGAGGCCT
CTCTTTGCTCGG

Coding sequence (CDS) from alignment at CM002460.1:657468..659029-

>rna3077 ID=rna3077|Name=rna3077|organism=Nannochloropsis gaditana|type=CDS|length=2256bp|location=Sequence derived from alignment at CM002460.1:657468..659029- (Nannochloropsis gaditana)
GTGGTGGTGAATTTTCGTCACATTACCGAGCTTGAGCATCACGGTGTGAA
TCGCACAGACCTTACAAAACTTATGGAAGCAGGGTATTGTACAGTCGAAT
CCATTACTCATGCAACACTTCGCAAGCTCACGGACATCAAAGGCATTTCT
GACCAGAAAGCTCAAAAAATTAAGGAAATAGCTTACAAGCTGGTTCCCAT
GGGTTTCTTGACGGCCGCACAACAGCTGGAGACTCGCAAAGATCTGATAC
AATTGTCAACAGGATCGAAGGATCTTGACGCTCTCCTAGGCGGAGGAGTG
GAGACAGGGTCATTGACAGAAATTTTTGGCGAGTTTCGCACAGGAAAGAC
GCAGCTTTGCCATACCCTTTGTGTGACGAGTCAGCTTCCCATGGACCAAG
GCGGGGGAGAAGGAAAAGCAATGTACATCGACACCGAGGGGACTTTTCGC
CCACAGCGCTTGGTGGCCATTGCGGAGCGATTTGGATTAGATGTAGATAC
CGTCTTGGACAACGTGGCTTTCGCTCGCGCCCACAATTCAGAGCAGCAAA
TGGATCTTTTGAAAATGGCGTCGGCGATGATGTCAGAAGATCGCTACGCT
CTGGTTGTGGTGGACTCGGCTACGGCTCTGTTTCGCACGGACTACTGCGG
GCGAGGGGAGCTATCAGAGCGGCAAATGCAGCTGGCGCAATTTTTGCGAC
AGTTGACAAGAATGTCCGAGGAGTTTGGCGTTGCAGTCGTGCTGACAAAC
CAGGTGGTGGCAAATCCTGATGGCATGAGCTTTGCAAAAGACCAAACAAA
GCCAATCGGAGGTAACATTATCGCTCACGCGTCACATACACGCCTGCGCT
TAAGAAAAGGCAGGGGAGAAAATCGAATTTGTCAGATTTACGATTCGCCA
ACCTTACCGGAAGCTGAGACTCAATTCTCTATCGGGGCATCGGGTATCGA
GGATGCAAAGGACTAGATGCTGCCATCATTTCTCTTCAGCATTCGCTCAC
ACTCAAACGACAACCGCAACAGTACATCCGGTGGTAAACTTGAAGCGTAC
TCTATCATGGCAGCAGCAGTGGCGGAAATGCAGCAGCATGCGACGATCGA
GCAAACGTCTGGAGTAGGAGAGCACGAGGTGGTGGTGAATTTTCGTCACA
TTACCGAGCTTGAGCATCACGGTGTGAATCGCACAGACCTTACAAAACTT
ATGGAAGCAGGGTATTGTACAGTCGAATCCATTACTCATGCAACACTTCG
CAAGCTCACGGACATCAAAGGCATTTCTGACCAGAAAGCTCAAAAAATTA
AGGAAATAGCTTACAAGCTGGTTCCCATGGGTTTCTTGACGGCCGCACAA
CAGCTGGAGACTCGCAAAGATCTGATACAATTGTCAACAGGATCGAAGGA
TCTTGACGCTCTCCTAGGCGGAGGAGTGGAGACAGGGTCATTGACAGAAA
TTTTTGGCGAGTTTCGCACAGGAAAGACGCAGCTTTGCCATACCCTTTGT
GTGACGAGTCAGCTTCCCATGGACCAAGGCGGGGGAGAAGGAAAAGCAAT
GTACATCGACACCGAGGGGACTTTTCGCCCACAGCGCTTGGTGGCCATTG
CGGAGCGATTTGGATTAGATGTAGATACCGTCTTGGACAACGTGGCTTTC
GCTCGCGCCCACAATTCAGAGCAGCAAATGGATCTTTTGAAAATGGCGTC
GGCGATGATGTCAGAAGATCGCTACGCTCTGGTTGTGGTGGACTCGGCTA
CGGCTCTGTTTCGCACGGACTACTGCGGGCGAGGGGAGCTATCAGAGCGG
CAAATGCAGCTGGCGCAATTTTTGCGACAGTTGACAAGAATGTCCGAGGA
GTTTGGCGTTGCAGTCGTGCTGACAAACCAGGTGGTGGCAAATCCTGATG
GCATGAGCTTTGCAAAAGACCAAACAAAGCCAATCGGAGGTAACATTATC
GCTCACGCGTCACATACACGCCTGCGCTTAAGAAAAGGCAGGGGAGAAAA
TCGAATTTGTCAGATTTACGATTCGCCAACCTTACCGGAAGCTGAGACTC
AATTCTCTATCGGGGCATCGGGTATCGAGGATGCAAAGGACTAGATGCTG
CCATCATTTCTCTTCAGCATTCGCTCACACTCAAACGACAACCGCAACAG
TACATCCGGTGGTAAACTTGAAGCGTACTCTATCATGGCAGCAGCAGTGG
CGGAAATGCAGCAGCATGCGACGATCGAGCAAACGTCTGGAGTAGGAGAG
CACGAG

Synonyms

Publications