rna3076, rna3076 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3076
Unique Name	rna3076
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1357
Alignment location	CM002460.1:654996..657088 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100069g16.5331.mrna
Orig protein id	gnl\|cribi\|Naga_100069g16.5331
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:654996..657088 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100069g16	gene2954	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3076	rna3076-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27612.1	cds3068	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:654996..657088-
coding sequence from alignment at CM002460.1:654996..657088-

mRNA sequence

>rna3076 ID=rna3076|Name=rna3076|organism=Nannochloropsis gaditana|type=mRNA|length=1357bp
TGACAGAGGGCAATCCAGGGACTGGGAAGCTTGAAGTGCCGGCCAAACCC
TGACCAGATGCATCGGCTTCCTCTCTATACTGGTGCTTTTGGCACACGCA
CCGATTAGGCTGCGTCTTGACAAGACTTTGCCTCTCCAGTCTGTGACGTT
TTACTTGCATACGGCGGTGCTGGGTGCATAGGCAAAGAGTCTCTTCTGTT
TGCTGTTCTCTCCCTCTTTTTTTCCGCTTGCCCACAGTGGTCGTCCTCCG
ATTGTTCTCGATGAAGGAGGGAAGCGCACCTAGATTTGTTTCGATACGAA
AGTTTTCTTCACCATTCACCTGCAGTTTCTCTCCGCTCTGGAAAAATTGT
ATCGCATCGTTCCTTCAATTTGCCTTGCAGCTGCATTTTGAGACATGTTA
GCAACTCCCAAAAAGTGTCGAAAGTGCTCCGTTCGATACTTGAAGTTGGT
TTCATATCAATCTGCTGCCTCGCCCTCTTCAGCCCTTCATGAGCACCCGC
TTACTTCGATCGTGCCAATACACACAGCCAAACAAAACCACTAGAACCAT
GATGTTCTTGCGCTTGTCAATTTTTGCCCTCCTGGCAGCGTCGGTTTTTG
CCTTCGTGCCCCCCGCTCCTCGTGTCATACGGTCTGCCTCCCAGGTCGTC
TTTGCTGAGGCGGAGAAGAATTTCATCACGGAGGCGGACAATTGCTTGAA
CGGGGAATGCTCCATCGACGACGTGAACGATCTCCTCATTCAGCTTCGAG
TGGAAATCAAGAGCCTGAAAACCAAATTGGCCGAGGTAGAAGCTTGCGAG
CAGCAGCTTACGCAAATGAACGGTGCCCCACTGGCGAAGGACGCCGTCAG
GGACATCATCAAGGCGGTCCTTCGCGCCATGGACGTGGATCCCGAGGACT
CCAGCTTCCCCCAGATTGTGCGTGCGGCCGGATTCGCGGGAGAGAAGTTC
AAAAAGAAGGGCTCTTTCGATGGCGTCCCTTACAAGAAGGCCTGAGCGAC
GCGGGCCCGGGCGCGCGGGATCTGAAGCGTGAAAAAGGCAGAGGAAAGGA
AAAATGAAGGATGGAAAGGAGGAAGAAGAGGAGCGGGGAGAGGGGAGGCG
GATGGACGGCCTGTCCTGACACTTTCCATCCATGCAAACGCCTTTTTGAT
GCATCGGGTCATCGAGTCATTCCCGTGCCTGACGGCCACTCGCACGCCGC
ATGTCGGTGGAGAGTGCTGCGACAGATTCAGCGGCATCCTCCTTCTTTTT
GTGCGGTGTAGGGAGAAACGAAATGATGGAGGCTTGTCTGTTTTAATGAA
AGAAATAAAAAAGAAGTATGAGCGAGTTCAGCCGCTCACTTGTCTCTATC
ATTGTTC

protein sequence of rna3076

>rna3076-protein ID=rna3076-protein|Name=rna3076|organism=Nannochloropsis gaditana|type=polypeptide|length=507bp
MPAFLPECPITNADALCQVLRGMMSEALQEGGQRLVDAATQDFPALIGDY
LGTEAVFVSPSQSSVGADLITGFDKNKCIATRRHLNLHRLRKALQDNILV
DIGALQEDYACGGTARGLWKFQVETTEKGLAVNRRKRSLPMDLLRIRELQ
LQAMLRFVMGTMGLLGTRRPSASSCIRPPLPTSLLKDVHHFLAYLQLRQT
FALGAEGMRGFRQAGGDPLLHPNKGTPHNAPVGRGVSTETPDQDRRAERA
RPHTSGYCMGDMGGGAQEGLEQDVDGEEACPHGMQATRVLDSNFHEFLAA
AFLKPFRASHPQDILALYTSLECEELLSADFLAEAAAGAAAATTRSVAKG
VSPKPKGPVFRCLRRDKAAASGFVSAYNKRREVPVDRTKAAATMPVGPAK
SMISGEAPSRPPTPPPSSPSGSSVLQQAMRESLRPRPSHYLSRINSFHKP
NQLSRRPLLSRQQQQHSAPTLPGLAARTFLGGKRRGYLHPPQLRYFLSSN
ERPPAMG

mRNA from alignment at CM002460.1:654996..657088-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3076 ID=rna3076|Name=rna3076|organism=Nannochloropsis gaditana|type=mRNA|length=2093bp|location=Sequence derived from alignment at CM002460.1:654996..657088- (Nannochloropsis gaditana)
ATGCCGGCCTTCCTCCCAGAATGTCCCATCACGAACGCCGATGCCCTCTG
CCAAGTTTTGCGAGGTATGATGTCTGAAGCCTTGCAAGAAGGGGGCCAAA
GGTTGGTTGATGCCGCCACGCAGGACTTTCCTGCGTTGATCGGCGACTAT
TTAGGAACGGAGGCAGTATTTGTCTCGCCTTCCCAAAGCTCTGTCGGCGC
AGACCTCATTACAGGATTTGATAAAAACAAATGTATCGCTACGAGGCGCC
ATTTAAACCTACATAGATTGCGCAAAGCACTTCAAGACAACATACTCGTG
GATATTGGCGCGTTGCAAGAGGACTACGCCTGTGGTGGGACAGCTCGAGG
TCTATGGAAGTTTCAAGTGGAGACAACCGAAAAAGGCCTTGCCGTAAATC
GACGCAAGCGATCCCTTCCGATGGATTTGCTACGAATTCGTGAACTCCAA
TTGCAGGCGATGTTGCGTTTCGTGATGGGTACAATGGGTCTTCTGGGCAC
CAGGCGACCCTCAGCTTCCTCCTGCATTCGCCCTCCCTTGCCTACTTCCC
TGCTCAAGGACGTGCATCACTTCCTGGCATACCTCCAGCTGCGTCAAACC
TTTGCCCTAGGCGCTGAAGGAATGAGGGGGTTCCGGCAAGCCGGAGGCGA
TCCTCTCCTGCATCCAAACAAGGGCACACCCCATAACGCCCCTGTCGGGC
GCGGCGTGTCAACGGAAACCCCCGATCAAGACAGGCGGGCCGAGAGGGCT
CGCCCCCACACTTCTGGCTACTGCATGGGCGATATGGGGGGCGGGGCGCA
AGAGGGGCTGGAGCAAGACGTGGATGGAGAGGAGGCGTGCCCCCACGGCA
TGCAGGCAACGCGCGTGCTTGACTCCAATTTTCACGAGTTCCTGGCCGCA
GCTTTCCTTAAACCCTTTCGCGCCAGCCACCCTCAGGACATACTGGCCCT
CTACACCTCGTTGGAGTGCGAGGAACTGCTGTCGGCGGATTTTTTGGCCG
AAGCAGCAGCAGGGGCAGCGGCTGCCACCACCAGGAGCGTGGCCAAAGGG
GTCTCACCCAAGCCCAAGGGTCCTGTGTTTCGGTGCCTCCGTCGCGACAA
AGCGGCAGCTTCTGGCTTTGTCTCCGCCTACAACAAGAGGCGGGAGGTTC
CAGTCGATAGGACGAAAGCAGCCGCCACGATGCCCGTGGGACCTGCGAAG
AGCATGATTTCCGGCGAGGCGCCTTCACGGCCGCCCACGCCTCCCCCCTC
CTCTCCCTCCGGCAGCAGTGTCCTGCAACAGGCCATGCGGGAGAGTCTAC
GGCCTCGCCCCAGCCACTACTTGTCGCGGATCAACAGCTTCCACAAGCCC
AACCAACTGTCACGGCGGCCCCTCCTCTCTCGGCAGCAGCAGCAGCACTC
CGCCCCCACGCTCCCCGGGTGCGATCGGCCACATGCGGTCAGCGAGCTTT
CCCGAGAATCGAGGCTTCATTCGACGCGCCCTGAACCCTCCCAGCCACAA
GCGCCCGCCCCGTCCATCATCACACGGGGGCCGATGGGACGCTTTTGTCC
GAAGCGCCAAAGGGAGCCGAGTCAGGAAGGGAAAGGGAGCCGGACCAGGG
AGAGGACAAGTCAGGAAGGCGGGTCGTGCGGAGGCTTTATGAATGGTGGT
TTTGGTCGCGCGGAAAAAAGGGGACGCCGGGGTGAGGAGACAATTGGAGG
TATCGGCCCTCCGAGTGCCCGGGGCGTTGGGATAGCTTCGCCGGTGGCTG
GCCGCAAGAGCTTGCACCGTGCTGGCAGGGGAATCACCGTGGTCCAGGGC
CCGACTGGCTCGGACATTCTGGGAACGCCTCCACCTTCTAGAAAAATGAG
ACGACCAGGCGGGGGAAGGGGGGCGGGCAGGGAAGAAGGGTCGGTCGTGG
TAGGGACACCCGAGCTGGAGGGACCCGGTCGCCGGCGCGTCCGGCCAGAA
GGGAGGGTGGCGGAGTCCCCCGTAGCGTAGCGATCAGGCTTGCGGCACGC
ACGTTCCTGGGTGGGAAACGAAGAGGGTATCTGCATCCACCGCAACTCCG
TTATTTCTTGTCTAGCAACGAGAGGCCTCCCGCGATGGGCTAG

Coding sequence (CDS) from alignment at CM002460.1:654996..657088-

>rna3076 ID=rna3076|Name=rna3076|organism=Nannochloropsis gaditana|type=CDS|length=3048bp|location=Sequence derived from alignment at CM002460.1:654996..657088- (Nannochloropsis gaditana)
GCTTGCGGCACGCACGTTCCTGGGTGGGAAACGAAGAGGGTATCTGCATC
CACCGCAACTCCGTTATTTCTTGTCTAGCAACGAGAGGCCTCCCGCGATG
GGCTAGATGCCGGCCTTCCTCCCAGAATGTCCCATCACGAACGCCGATGC
CCTCTGCCAAGTTTTGCGAGGTATGATGTCTGAAGCCTTGCAAGAAGGGG
GCCAAAGGTTGGTTGATGCCGCCACGCAGGACTTTCCTGCGTTGATCGGC
GACTATTTAGGAACGGAGGCAGTATTTGTCTCGCCTTCCCAAAGCTCTGT
CGGCGCAGACCTCATTACAGGATTTGATAAAAACAAATGTATCGCTACGA
GGCGCCATTTAAACCTACATAGATTGCGCAAAGCACTTCAAGACAACATA
CTCGTGGATATTGGCGCGTTGCAAGAGGACTACGCCTGTGGTGGGACAGC
TCGAGGTCTATGGAAGTTTCAAGTGGAGACAACCGAAAAAGGCCTTGCCG
TAAATCGACGCAAGCGATCCCTTCCGATGGATTTGCTACGAATTCGTGAA
CTCCAATTGCAGGCGATGTTGCGTTTCGTGATGGGTACAATGGGTCTTCT
GGGCACCAGGCGACCCTCAGCTTCCTCCTGCATTCGCCCTCCCTTGCCTA
CTTCCCTGCTCAAGGACGTGCATCACTTCCTGGCATACCTCCAGCTGCGT
CAAACCTTTGCCCTAGGCGCTGAAGGAATGAGGGGGTTCCGGCAAGCCGG
AGGCGATCCTCTCCTGCATCCAAACAAGGGCACACCCCATAACGCCCCTG
TCGGGCGCGGCGTGTCAACGGAAACCCCCGATCAAGACAGGCGGGCCGAG
AGGGCTCGCCCCCACACTTCTGGCTACTGCATGGGCGATATGGGGGGCGG
GGCGCAAGAGGGGCTGGAGCAAGACGTGGATGGAGAGGAGGCGTGCCCCC
ACGGCATGCAGGCAACGCGCGTGCTTGACTCCAATTTTCACGAGTTCCTG
GCCGCAGCTTTCCTTAAACCCTTTCGCGCCAGCCACCCTCAGGACATACT
GGCCCTCTACACCTCGTTGGAGTGCGAGGAACTGCTGTCGGCGGATTTTT
TGGCCGAAGCAGCAGCAGGGGCAGCGGCTGCCACCACCAGGAGCGTGGCC
AAAGGGGTCTCACCCAAGCCCAAGGGTCCTGTGTTTCGGTGCCTCCGTCG
CGACAAAGCGGCAGCTTCTGGCTTTGTCTCCGCCTACAACAAGAGGCGGG
AGGTTCCAGTCGATAGGACGAAAGCAGCCGCCACGATGCCCGTGGGACCT
GCGAAGAGCATGATTTCCGGCGAGGCGCCTTCACGGCCGCCCACGCCTCC
CCCCTCCTCTCCCTCCGGCAGCAGTGTCCTGCAACAGGCCATGCGGGAGA
GTCTACGGCCTCGCCCCAGCCACTACTTGTCGCGGATCAACAGCTTCCAC
AAGCCCAACCAACTGTCACGGCGGCCCCTCCTCTCTCGGCAGCAGCAGCA
GCACTCCGCCCCCACGCTCCCCGGGCTTGCGGCACGCACGTTCCTGGGTG
GGAAACGAAGAGGGTATCTGCATCCACCGCAACTCCGTTATTTCTTGTCT
AGCAACGAGAGGCCTCCCGCGATGGGCTAGATGCCGGCCTTCCTCCCAGA
ATGTCCCATCACGAACGCCGATGCCCTCTGCCAAGTTTTGCGAGGTATGA
TGTCTGAAGCCTTGCAAGAAGGGGGCCAAAGGTTGGTTGATGCCGCCACG
CAGGACTTTCCTGCGTTGATCGGCGACTATTTAGGAACGGAGGCAGTATT
TGTCTCGCCTTCCCAAAGCTCTGTCGGCGCAGACCTCATTACAGGATTTG
ATAAAAACAAATGTATCGCTACGAGGCGCCATTTAAACCTACATAGATTG
CGCAAAGCACTTCAAGACAACATACTCGTGGATATTGGCGCGTTGCAAGA
GGACTACGCCTGTGGTGGGACAGCTCGAGGTCTATGGAAGTTTCAAGTGG
AGACAACCGAAAAAGGCCTTGCCGTAAATCGACGCAAGCGATCCCTTCCG
ATGGATTTGCTACGAATTCGTGAACTCCAATTGCAGGCGATGTTGCGTTT
CGTGATGGGTACAATGGGTCTTCTGGGCACCAGGCGACCCTCAGCTTCCT
CCTGCATTCGCCCTCCCTTGCCTACTTCCCTGCTCAAGGACGTGCATCAC
TTCCTGGCATACCTCCAGCTGCGTCAAACCTTTGCCCTAGGCGCTGAAGG
AATGAGGGGGTTCCGGCAAGCCGGAGGCGATCCTCTCCTGCATCCAAACA
AGGGCACACCCCATAACGCCCCTGTCGGGCGCGGCGTGTCAACGGAAACC
CCCGATCAAGACAGGCGGGCCGAGAGGGCTCGCCCCCACACTTCTGGCTA
CTGCATGGGCGATATGGGGGGCGGGGCGCAAGAGGGGCTGGAGCAAGACG
TGGATGGAGAGGAGGCGTGCCCCCACGGCATGCAGGCAACGCGCGTGCTT
GACTCCAATTTTCACGAGTTCCTGGCCGCAGCTTTCCTTAAACCCTTTCG
CGCCAGCCACCCTCAGGACATACTGGCCCTCTACACCTCGTTGGAGTGCG
AGGAACTGCTGTCGGCGGATTTTTTGGCCGAAGCAGCAGCAGGGGCAGCG
GCTGCCACCACCAGGAGCGTGGCCAAAGGGGTCTCACCCAAGCCCAAGGG
TCCTGTGTTTCGGTGCCTCCGTCGCGACAAAGCGGCAGCTTCTGGCTTTG
TCTCCGCCTACAACAAGAGGCGGGAGGTTCCAGTCGATAGGACGAAAGCA
GCCGCCACGATGCCCGTGGGACCTGCGAAGAGCATGATTTCCGGCGAGGC
GCCTTCACGGCCGCCCACGCCTCCCCCCTCCTCTCCCTCCGGCAGCAGTG
TCCTGCAACAGGCCATGCGGGAGAGTCTACGGCCTCGCCCCAGCCACTAC
TTGTCGCGGATCAACAGCTTCCACAAGCCCAACCAACTGTCACGGCGGCC
CCTCCTCTCTCGGCAGCAGCAGCAGCACTCCGCCCCCACGCTCCCCGG

Synonyms

Publications