EWM27612.1, cds3068 (CDS) Nannochloropsis gaditana

Overview
NameEWM27612.1
Unique Namecds3068
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:655671..657088 -
Alignment locationCM002460.1:654996..655101 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27612.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100069g16.5331.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:655671..657088 -
CM002460.1supercontigCM002460.1:654996..655101 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Homology
[Close]
BLAST of EWM27612.1 vs. NCBI_GenBank
Match: gi|585109880|gb|EWM27612.1| (hypothetical protein Naga_100069g16 [Nannochloropsis gaditana])

HSP 1 Score: 1035.4 bits (2676), Expect = 0.000e+0
Identity = 507/507 (100.00%), Postives = 507/507 (100.00%), Query Frame = 0 
Query:    1 MPAFLPECPITNADALCQVLRGMMSEALQEGGQRLVDAATQDFPALIGDYLGTEAVFVSPSQSSVGADLITGFDKNKCIATRRHLNLHRLRKALQDNILVDIGALQEDYACGGTARGLWKFQVETTEKGLAVNRRKRSLPMDLLRIRELQLQAMLRFVMGTMGLLGTRRPSASSCIRPPLPTSLLKDVHHFLAYLQLRQTFALGAEGMRGFRQAGGDPLLHPNKGTPHNAPVGRGVSTETPDQDRRAERARPHTSGYCMGDMGGGAQEGLEQDVDGEEACPHGMQATRVLDSNFHEFLAAAFLKPFRASHPQDILALYTSLECEELLSADFLAEAAAGAAAATTRSVAKGVSPKPKGPVFRCLRRDKAAASGFVSAYNKRREVPVDRTKAAATMPVGPAKSMISGEAPSRPPTPPPSSPSGSSVLQQAMRESLRPRPSHYLSRINSFHKPNQLSRRPLLSRQQQQHSAPTLPGLAARTFLGGKRRGYLHPPQLRYFLSSNERPPAMG 507
            MPAFLPECPITNADALCQVLRGMMSEALQEGGQRLVDAATQDFPALIGDYLGTEAVFVSPSQSSVGADLITGFDKNKCIATRRHLNLHRLRKALQDNILVDIGALQEDYACGGTARGLWKFQVETTEKGLAVNRRKRSLPMDLLRIRELQLQAMLRFVMGTMGLLGTRRPSASSCIRPPLPTSLLKDVHHFLAYLQLRQTFALGAEGMRGFRQAGGDPLLHPNKGTPHNAPVGRGVSTETPDQDRRAERARPHTSGYCMGDMGGGAQEGLEQDVDGEEACPHGMQATRVLDSNFHEFLAAAFLKPFRASHPQDILALYTSLECEELLSADFLAEAAAGAAAATTRSVAKGVSPKPKGPVFRCLRRDKAAASGFVSAYNKRREVPVDRTKAAATMPVGPAKSMISGEAPSRPPTPPPSSPSGSSVLQQAMRESLRPRPSHYLSRINSFHKPNQLSRRPLLSRQQQQHSAPTLPGLAARTFLGGKRRGYLHPPQLRYFLSSNERPPAMG
Sbjct:    1 MPAFLPECPITNADALCQVLRGMMSEALQEGGQRLVDAATQDFPALIGDYLGTEAVFVSPSQSSVGADLITGFDKNKCIATRRHLNLHRLRKALQDNILVDIGALQEDYACGGTARGLWKFQVETTEKGLAVNRRKRSLPMDLLRIRELQLQAMLRFVMGTMGLLGTRRPSASSCIRPPLPTSLLKDVHHFLAYLQLRQTFALGAEGMRGFRQAGGDPLLHPNKGTPHNAPVGRGVSTETPDQDRRAERARPHTSGYCMGDMGGGAQEGLEQDVDGEEACPHGMQATRVLDSNFHEFLAAAFLKPFRASHPQDILALYTSLECEELLSADFLAEAAAGAAAATTRSVAKGVSPKPKGPVFRCLRRDKAAASGFVSAYNKRREVPVDRTKAAATMPVGPAKSMISGEAPSRPPTPPPSSPSGSSVLQQAMRESLRPRPSHYLSRINSFHKPNQLSRRPLLSRQQQQHSAPTLPGLAARTFLGGKRRGYLHPPQLRYFLSSNERPPAMG 507
[Close]
BLAST of EWM27612.1 vs. NCBI_GenBank
Match: gi|553181704|ref|XP_005853611.1| (dna repair protein rad51, partial [Nannochloropsis gaditana CCMP526] >gi|422295451|gb|EKU22750.1| dna repair protein rad51, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 936.406 bits (2419), Expect = 0.000e+0
Identity = 457/464 (98.49%), Postives = 458/464 (98.71%), Query Frame = 0 
Query:    1 MPAFLPECPITNADALCQVLRGMMSEALQEGGQRLVDAATQDFPALIGDYLGTEAVFVSPSQSSVGADLITGFDKNKCIATRRHLNLHRLRKALQDNILVDIGALQEDYACGGTARGLWKFQVETTEKGLAVNRRKRSLPMDLLRIRELQLQAMLRFVMGTMGLLGTRRPSASSCIRPPLPTSLLKDVHHFLAYLQLRQTFALGAEGMRGFRQAGGDPLLHPNKGTPHNAPVGRGVSTETPDQDRRAERARPHTSGYCMGDMGGGAQEGLEQDVDGEEACPHGMQATRVLDSNFHEFLAAAFLKPFRASHPQDILALYTSLECEELLSADFLAEAAAGAAAATTRSVAKGVSPKPKGPVFRCLRRDKAAASGFVSAYNKRREVPVDRTKAAATMPVGPAKSMISGEAPSRPPTPPPSSPSGSSVLQQAMRESLRPRPSHYLSRINSFHKPNQLSRRPLLSRQQQ 464
            MPAFLPECPITNADALCQVLRGMMSEALQEGGQRLVDAATQDF ALIGDYLGTEAV+VSPSQSSVGADLITGFDKNK IATRRHLNLHRLRKALQD ILVDIGALQEDYACGGTARGLWKFQVETTEKGLAVNRRKRSLPMDLLRIRELQLQAMLRFVMGTMGLLGTRRPSASSCIRPPLPTSLLKDVHHFLAYLQLRQTFALGAEGMRGFRQAGGDPLLHPNKGTPHNAPVGRGVSTETPDQDRRAER  PH SGYCMGDMGGGAQEGLEQDVDGEEACPHGMQATRVLDSNFHEFLAAAFLKPFRASHPQDILALYTSLECEELLSADFLAEAAAGAAAATTRSVAKGVSPKPKGPVFRCLRRDKAAASGFVSAYNKRREVPVDRTKAAATMPVGPAKSMISGEAPSRPPTPPPSSPSGSSVLQQAMRESLRPRPSHYLSRINSFHKPNQLSRRPLLSRQQQ
Sbjct:  213 MPAFLPECPITNADALCQVLRGMMSEALQEGGQRLVDAATQDFRALIGDYLGTEAVYVSPSQSSVGADLITGFDKNKYIATRRHLNLHRLRKALQDKILVDIGALQEDYACGGTARGLWKFQVETTEKGLAVNRRKRSLPMDLLRIRELQLQAMLRFVMGTMGLLGTRRPSASSCIRPPLPTSLLKDVHHFLAYLQLRQTFALGAEGMRGFRQAGGDPLLHPNKGTPHNAPVGRGVSTETPDQDRRAERPCPHASGYCMGDMGGGAQEGLEQDVDGEEACPHGMQATRVLDSNFHEFLAAAFLKPFRASHPQDILALYTSLECEELLSADFLAEAAAGAAAATTRSVAKGVSPKPKGPVFRCLRRDKAAASGFVSAYNKRREVPVDRTKAAATMPVGPAKSMISGEAPSRPPTPPPSSPSGSSVLQQAMRESLRPRPSHYLSRINSFHKPNQLSRRPLLSRQQQ 676
The following BLAST results are available for this feature:
BLAST of EWM27612.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109880|gb|EWM27612.1|0.000e+0100.00hypothetical protein Naga_100069g16 [Nannochlorops... [more]
gi|553181704|ref|XP_005853611.1|0.000e+098.49dna repair protein rad51, partial [Nannochloropsis... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3076rna3076Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications